- Royal Netherlands Academy of Arts & Sciences (KNAW)
- DANS-KNAW
- Fryske Akademy (FA)
- Hubrecht Institute
- KNAW Humanities Cluster
- Huygens Instituut
- Huygens ING - Digital Data Management
- Huygens - Politieke Cultuur en Geschiedenis
- Huygens - LivesLab
- Huygens - Computationele Literatuurwetenschap
- Huygens - Kennis- en Kunstpraktijken
- Huygens - Digitale Edities
- Huygens ING - ICT
- Huygens ING - Geschiedenis
- Huygens ING - Wetenschapsgeschiedenis
- Huygens ING - Letterkunde
- IISH
- KITLV/Royal Netherlands Institute of Southeast Asian and Caribbean Studies
- Meertens Institute
- Netherlands Interdisciplinary Demographic Institute (NIDI)
- Netherlands Institute for Neuroscience (NIN)
- NIOD Institute for War, Holocaust and Genocide studies
- Netherlands Institute of Ecology (NIOO-KNAW)
- Rathenau Institute
- Spinoza Centre for Neuroimaging
- Westerdijk Fungal Biodiversity Institute
- Westerdijk Fungal Biodiversity Institute - Collection
- Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology
- Westerdijk Fungal Biodiversity Institute - Food and Indoor Mycology
- Westerdijk Fungal Biodiversity Institute - Fungal Natural Products
- Westerdijk Fungal Biodiversity Institute - Fungal Physiology
- Westerdijk Fungal Biodiversity Institute - Medical Mycology
- Westerdijk Fungal Biodiversity Institute - Software and Databasing
- Westerdijk Fungal Biodiversity Institute - Yeast Research