1. Article › Scientific › Not peer-reviewed
  2. Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood

    Kulichevskaya, I. S., Kostina, L. A., Valášková, V., Rijpstra, I. C., Sinninghe Damsté, J. S., De Boer, W. & Dedysh, S. N., 2012, In : International Journal of Systematic and Evolutionary Microbiology. 62, PT_7, p. 1512-1520

    Research output: Contribution to journal/periodicalArticleScientific

  3. Article › Scientific › Peer-reviewed
  4. Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel Internal Amplification Control approach using Biotrove OpenArrays

    Van Doorn, R., Klerks, M., van Gent-Pelzer, M., Speksnijder, A. G. C. L., Kowalchuk, G. A. & Schoen, C. D., 2009, In : Applied and Environmental Microbiology. 75, 22, p. 7253-7260

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  5. Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

    Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A. & Tsai, S. M., 2013, In : FEMS Microbiology Ecology. 83, 3, p. 607-621

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  6. A comparative study of the use of inorganic carbon resources by Chara aspera and Potamogeton pectinatus

    Van den Berg, M., Coops, H., Simons, J. & Pilon, J., 2002, In : Aquatic Botany. 72, 3-4, p. 219-233

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  7. A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

    Vos, M., Quince, C., Pijl, A. S., De Hollander, M. & Kowalchuk, G. A., 2012, In : PLoS One. 7, 2, e30600.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  8. Ammonia-oxidizing bacteria: A model for molecular microbial ecology

    Kowalchuk, G. A. & Stephen, J. R., 2001, In : Annual Review of Microbiology. 55, p. 485-529

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  9. Ammonium-induced inhibition of ammonium-starved Nitrosomonas europaea cells in soil and sand slurries

    Gerards, S., Duyts, H. & Laanbroek, H. J., 1998, In : FEMS Microbiology Ecology. 26, 4, p. 269-280

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  10. Ammonium-Oxidation at Low Ph by a Chemolithotrophic Bacterium Belonging to the Genus Nitrosospira

    De Boer, W., Klein Gunnewiek, P. J. A. & Laanbroek, H. J., 1995, In : Soil Biology & Biochemistry. 27, 2, p. 127-132

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  11. A molecular biological protocol to distinguish potentially human pathogenic Stenotrophomonas maltophilia from plant-associated Stenotrophomonas rhizophila

    Ribbeck-Busch, K., Roder, A., Hasse, D., De Boer, W., Martinez, J. L., Hagemann, M. & Berg, G., 2005, In : Environmental Microbiology. 7, 11, p. 1853-1858

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  12. Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments

    Kowalchuk, G. A., Stephen, J. R., De Boer, W., Prosser, J. I., Embley, T. M. & Woldendorp, J. W., 1997, In : Applied and Environmental Microbiology. 63, 4, p. 1489-1497

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  13. Analysis of bacterial communities in the rhizosphere of chrysanthemum via denaturing gradient gel electrophoresis of PCR-amplified 16S rRNA as well as DNA fragments coding for 16S rRNA

    Duineveld, B. M., Kowalchuk, G. A., Keijzer, A., Van Elsas, J. D. & Van Veen, J. A., 2001, In : Applied and Environmental Microbiology. 67, 1, p. 172-178

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  14. Analysis of ß-subgroup proteobacterial ammonia oxidizer populations in soil by denaturing gradient gel electrophoresis analysis and hierarchical phylogenetic probing

    Stephen, J. R., Kowalchuk, G. A., Bruns, M. A., McCaig, A. E., Phillips, C. B., Embley, T. M. & Prosser, J. I., 1998, In : Applied and Environmental Microbiology. 64, 8, p. 2958-2965

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  15. Analysis of the dynamics of bacterial communities in the rhizosphere of the Chrysanthemum via denaturing gradient gel eletrophoresis and substrate utilization patterns

    Duineveld, B. M., Rosado, A. S., Van Elsas, J. D. & Van Veen, J. A., 1998, In : Applied and Environmental Microbiology. 64, p. 4950-4957

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  16. An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

    Mondego, J. M. C., Vidal, R. O., Carazzolle, M. F., Tokuda, E. K., Parizzi, L. P., Costa, G. G. L., Pereira, L. F. P., Andrade, A. C., Colombo, C. A., Vieira, L. G. E., Pereira, G. A. G. & Kuramae, E. E., 2011, In : BMC Plant Biology. 11, p. 30

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  17. Anti-fungal properties of chitinolytic dune soil bacteria

    De Boer, W., Klein Gunnewiek, P. J. A., Lafeber, P., Janse, J. H., Spit, B. E. & Woldendorp, J. W., 1998, In : Soil Biology & Biochemistry. 30, 2, p. 193-203

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  18. A PCR-denaturing gradient gel electrophoresis (DGGE) approach to assess Fusarium diversity in asparagus

    Yergeau, E., Filion, M., Vujanovic, V. & St-Arnaud, M., 2005, In : Journal of Microbiological Methods. 60, 2, p. 143-154

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  19. Arbuscular mycorrhizal fungi reveal distinct patterns of anastomosis formation and hyphal healing mechanisms between different phylogenic groups

    De Souza, F. A., Fernández, F., Delmas, N. S. & Declerck, S., 2005, In : New Phytologist. 165, 1, p. 261-271

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  20. Assessing response of soil microorganisms to GM plants

    Kowalchuk, G. A., Bruinsma, M. & Van Veen, J. A., 2003, In : Trends in Ecology & Evolution. 18, 8, p. 403-410

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  21. Assessment of the diversity, and antagonism towards Rhizoctonia solani AG3, of Pseudomonas species in soil from different agricultural regimes

    Garbeva, P. V., Van Veen, J. A. & van Elsas, J. D., 2004, In : FEMS Microbiology Ecology. 47, 1, p. 51-64

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  22. A survey of 16S rRNA and amoA genes related to autotrophic ammonia-oxidizing bacteria of the ß-subdivision of the class proteobacteria in contaminated groundwater

    Ivanova, I. A., Stephen, J. R., Chang, Y. J., Bruggemann, J., Long, P. E., McKinley, J. P., Kowalchuk, G. A., White, D. C. & MacNaughton, S. J., 2000, In : Canadian Journal of Microbiology. 46, 11, p. 1012-1020

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  23. Bacterial mycophagy: definition and diagnosis of a unique bacterial-fungal interaction

    Leveau, J. H. J. & Preston, G. M., 2008, In : New Phytologist. 177, 4, p. 859-876

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  24. Bacteria, not archaea, restore nitrification in a zinc-contaminated soil

    Mertens, J., Broos, K., Wakelin, S. A., Kowalchuk, G. A., Springael, D. & Smolders, E., 2009, In : ISME Journal. 3, 8, p. 916-923

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  25. Biodiversity and biogeography of Fusarium species from northeastern North American asparagus fields based on microbiological and molecular approaches

    Vujanovic, V., Hamel, C., Yergeau, E. & St-Arnaud, M., 2006, In : Microbial Ecology. 51, 2, p. 242-255

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  26. Bioreporters in microbial ecology

    Leveau, J. H. J. & Lindow, S. E., 2002, In : Current Opinion in Microbiology. 5, 3, p. 259-265

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  27. Changes in agricultural management drive the diversity of Burkholderia species isolated from soil on PCAT medium

    Salles, J., Samyn, E., Vandamme, P., Van Veen, J. A. & van Elsas, J. D., 2006, In : Soil Biology & Biochemistry. 38, 4, p. 661-673

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  28. Changes in Fusarium and arbuscular-mycorrhizal fungi communities as related with different asparagus cultural factors

    Yergeau, E., Vujanovic, V. & St-Arnaud, M., 2006, In : Microbial Ecology. 52, 1, p. 104-113

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  29. Changes in the community structure of ammonia-oxidizing bacteria during secondary succession of calcareous grasslands

    Kowalchuk, G. A., Stienstra, A. W., Heilig, G. H. J., Stephen, J. R. & Woldendorp, J. W., 2000, In : Environmental Microbiology. 2, 1, p. 99-110

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  30. Characterisation of Lysobacter enzymogenes ( Christensen and Cook 1978) strain 3.1 T8, a powerful antagonist of fungal diseases of cucumber

    Folman, L. B., Postma, J. & Van Veen, J. A., 2003, In : Microbiological Research. 158, 2, p. 107-115

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  31. Characterization of Xanthomonas axonopodis pv. phaseoli isolates

    Nunes, W. M. C., Corazza, M. J., De Souza, S. A. C. D., Tsai, S. M. & Kuramae, E. E., 2008, In : Summa Phytopathologica. 34, 3, p. 228-231

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  32. Citomorphological, cultural, molecular and pathogenical characterization of Rhizoctonia solani Kühn associated with rice in Tocantins, Brazil

    Souza, E. C., Kuramae, E. E., Nakatani, A. K., Basseto, M. A., Prabhu, A. S. & Ceresini, P. C., 2007, In : Summa Phytopathologica. 33, 2, p. 129-136

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  33. Climate change goes underground: effects of elevated atmospheric CO2 on microbial community structure and activities in the rhizosphere

    Drigo, B., Kowalchuk, G. A. & Van Veen, J. A., 2008, In : Biology and Fertility of Soils. 44, 5, p. 667-679

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  34. Collimonas arenae sp. nov. and Collimonas pratensis sp. nov., isolated from (semi-) natural grassland soils

    Höppener-Ogawa, S., De Boer, W., Leveau, J. H. J., Van Veen, J. A., de Brandt, E., Vanlaere, E., Sutton, H., Dare, D. J. & Vandamme, P., 2008, In : International Journal of Systematic and Evolutionary Microbiology. 58, p. 414-419

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  35. Collimonas fungivorans, an unpredicted in vitro but efficient in vivo biocontrol agent for the suppression of tomato foot and root rot

    Kamilova, F., Leveau, J. H. J. & Lugtenberg, B., 2007, In : Environmental Microbiology. 9, 6, p. 1597-1603

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  36. Collimonas fungivorans gen. nov., sp. nov., a chitinolytic soil bacterium with the ability to grow on living fungal hyphae

    De Boer, W., Leveau, J. H. J., Kowalchuk, G. A., Klein Gunnewiek, P. J. A., Abeln, E. C. A., Figge, M. J., Sjollema, K., Janse, J. H. & Van Veen, J. A., 2004, In : International Journal of Systematic and Evolutionary Microbiology. 54, p. 857-864

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  37. Community analysis of ammonia-oxidising bacteria, in relation to oxygen availability in soils and root-oxygenated sediments, using PCR, DGGE and oligonucleotide probe hybridisation

    Kowalchuk, G. A., Bodelier, P. L. E., Heilig, G. H. J., Stephen, J. R. & Laanbroek, H. J., 1998, In : FEMS Microbiology Ecology. 27, 4, p. 339-350

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  38. Community analysis of arbuscular mycorrhizal fungi associated with Ammophila arenaria in Dutch coastal sand dunes

    Kowalchuk, G. A., De Souza, F. A. & Van Veen, J. A., 2002, In : Molecular Ecology. 11, 3, p. 571-581

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  39. Community patterns of soil bacteria and nematodes in relation to geographic distance

    Monroy, F., Van der Putten, W. H., Yergeau, E., Mortimer, S. R., Duyts, H. & Bezemer, T. M., 2012, In : Soil Biology & Biochemistry. 45, p. 1-7

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  40. Comparative-Analysis of Gene-Sequences Encoding Ammonia Monooxygenase of Nitrosospira Sp Ahb1 and Nitrosolobus- Multiformis C-71

    Rotthauwe, J. H., De Boer, W. & Liesack, W., 1995, In : FEMS Microbiology Letters. 133, 1-2, p. 131-135

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  41. Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and successional soils

    Bruns, M. A., Stephen, J. R., Kowalchuk, G. A., Prosser, J. I. & Paul, E. A., 1999, In : Applied and Environmental Microbiology. 65, 7, p. 2994-3000

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  42. Comparative genomics of the pIPO2/pSB102 family of environmental plasmids: sequence, evolution, and ecology of pTer331 isolated from Collimonas fungivorans Ter331

    Mela, F., Fritsche, K., Boersma, H., van Elsas, J. D., Bartels, D., Meyer, F., De Boer, W., Van Veen, J. A. & Leveau, J. H. J., 2008, In : FEMS Microbiology Ecology. 66, 1, p. 45-62

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  43. Comparing arbuscular mycorrhizal communities of individual plants in a grassland biodiversity experiment

    Van de Voorde, T. F. J., Van der Putten, W. H., Gamper, H. A., Hol, W. H. G. & Bezemer, T. M., 2010, In : New Phytologist. 186, 3, p. 746-754

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  44. Competition for nitrate and glucose between Pseudomonas fluorescens and Bacillus licheniformis under continuous or fluctuating anoxic conditions

    Nijburg, J. W., Gerards, S. & Laanbroek, H. J., 1998, In : FEMS Microbiology Ecology. 26, 4, p. 345-356

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  45. Competitive PCR-DGGE analysis of bacterial mixtures an internal standard and an appraisal of template enumeration accuracy

    Brüggemann, J., Stephen, J. R., Chang, Y. J., MacNaughton, S. J., Kowalchuk, G. A., Kline, E. & White, D. C., 2000, In : Journal of Microbiological Methods. 40, 2, p. 111-123

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  46. Concentration and vertical distribution of total soil phosphorus in relation to time of abandonment of arable fields

    Van der Wal, A., De Boer, W., Lubbers, I. M. & Van Veen, J. A., 2007, In : Nutrient Cycling in Agroecosystems. 79, 1, p. 73-79

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  47. Constraints on development of fungal biomass and decomposition processes during restoration of arable sandy soils.

    Van der Wal, A., Van Veen, J. A., Pijl, A. S., Summerbell, R. C. & De Boer, W., 2006, In : Soil Biology & Biochemistry. 38, 9, p. 2890-2902

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  48. Contribution of nitrification and denitrification to the NO and N2O emissions of an acid forest soil, a river sediment and a fertilized grassland soil

    Kester, R. A., Meijer, M. L., Libochant, J. A., De Boer, W. & Laanbroek, H. J., 1997, In : Soil Biology & Biochemistry. 29, 11-12, p. 1655-1664

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  49. Cophenetic correlation analysis as a strategy to select phylogenetically informative proteins: an example from the fungal kingdom

    Kuramae, E. E., Robert, V., Echavarri-Erasun, C. & Boekhout, T., 2007, In : BMC Evolutionary Biology. 7, p. 134

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  50. Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens

    Xu, J., Saunders, C., Hu, P., Grant, R. A., Boekhout, T., Kuramae, E. E., Kronstad, J. W., DeAngelis, Y. M., Reeder, N. L., Johnstone, K. R., Leland, M., Fieno, A. M., Begley, W. M., Sun, Y., Lacey, M. P., Chaudhary, T., Keough, T., Chu, L., Sears, R., Yuan, B. & 1 othersDawson Jr., T. L., 2007, In : Proceedings of the National Academy of Sciences of the United States of America. 104, 47, p. 18730-18735

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  51. Defensive properties of pyrrolizidine alkaloids against microorganisms

    Joosten, L. & Van Veen, J. A., 2011, In : Phytochemistry Reviews. 10, 1, p. 127-136

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  52. Detection and characterization of fungal infections of Ammophila arenaria (marram grass) roots by denaturing gradient gel electrophoresis of specifically amplified 18S rDNA

    Kowalchuk, G. A., Gerards, S. & Woldendorp, J. W., 1997, In : Applied and Environmental Microbiology. 63, 10, p. 3858-3865

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  53. Development of extraradical mycelium of Scutellospora reticulata under root-organ culture : spore production and function of auxiliary cells

    Declerck, S., D'Or, D., Bivort, C. & De Souza, F. A., 2004, In : Mycological Research. 108, p. 84-92

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  54. Differences in vegetation composition and plant species identity lead to only minor changes in soil-borne microbial communities in a former arable field

    Kielak, A. M., Pijl, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2008, In : FEMS Microbiology Ecology. 63, 3, p. 372-382

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  55. Discovery of a bacterial gene cluster for catabolism of the plant hormone indole 3-acetic acid

    Leveau, J. H. J. & Gerards, S., 2008, In : FEMS Microbiology Ecology. 65, 2, p. 238-250

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  56. Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus

    Gamper, H. A., Walker, C. & Schüßler, A., 2009, In : New Phytologist. 182, 2, p. 495-506

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  57. Effect of above-ground plant species on soil microbial community structure and its impact on suppression of Rhizoctonia solani AG3

    Garbeva, P. V., Postma, J., Van Veen, J. A. & van Elsas, J. D., 2006, In : Environmental Microbiology. 8, 2, p. 233-246

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  58. Effect of agricultural management regimes on Burkholderia community structure in soil

    Salles, J., van Elsas, J. D. & Van Veen, J. A., 2006, In : Microbial Ecology. 52, 2, p. 267-279

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  59. Effect of toxic metals on indigenous soil ß-subgroup proteobacterium ammonia oxidizer community structure and protection against toxicity by inoculated metal-resistant bacteria

    Stephen, J. R., Chang, Y. J., MacNaughton, S. J., Kowalchuk, G. A., Leung, K. T., Flemming, C. A. & White, D. C., 1999, In : Applied and Environmental Microbiology. 65, 1, p. 95-101

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  60. Effect of vegetation manipulation of abandoned arable land on soil microbial properties

    Maly, S., Korthals, G. W., Van Dijk, C., Van der Putten, W. H. & De Boer, W., 2000, In : Biology and Fertility of Soils. 31, 2, p. 121-127

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  61. Effects of above-ground plant species composition and diversity on the diversity of soil-borne microorganisms

    Kowalchuk, G. A., Buma, D. S., De Boer, W., Klinkhamer, P. G. L. & Van Veen, J. A., 2002, In : Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 81, 1-4, p. 509-520

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  62. Effects of agronomical measures on the microbial deversity of soils as related to the suppression of soil-borne plant pathogens

    Van Elsas, J. D., Garbeva, P. V. & Salles, J., 2002, In : Biodegradation. 13, 1, p. 29-40

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  63. Effects of genetically modified plants on microbial communities and processes in soil

    Bruinsma, M., Kowalchuk, G. A. & Van Veen, J. A., 2003, In : Biology and Fertility of Soils. 37, 6, p. 329-337

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  64. Effects of global changes on above- and belowground biodiversity in terrestrial ecosystems: Implications for ecosystem functioning

    Wolters, V., Silver, W. L., Bignell, D. E., Coleman, D. C., Lavelle, P., Van der Putten, W. H., De Ruiter, P. C., Rusek, J., Wall, D. H., Wardle, D. A., Brussaard, L., Dangerfield, J. M., Brown, V. K., Giller, K. E., Hooper, D. U., Sala, O., Tiedje, J. M. & Van Veen, J. A., 2000, In : BioScience. 50, 12, p. 1089-1098

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  65. Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana.

    Doornbos, R. F., Geraats, B. P. J., Kuramae, E. E., van Loon, L. C. & Bakker, P., 2011, In : Molecular Plant-Microbe Interactions. 24, 4, p. 395-407

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  66. Effects of nitrate availability and the presence of Glyceria maxima the composition and activity of the dissimilatory nitrate-reducing bacterial community

    Nijburg, J. W., Coolen, M., Gerards, S., Klein Gunnewiek, P. J. A. & Laanbroek, H. J., 1997, In : Applied and Environmental Microbiology. 63, 3, p. 931-937

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  67. Empirical and theoretical challenges in aboveground–belowground ecology

    Van der Putten, W. H., Bardgett, R. D., de Ruiter, P. C., Hol, W. H. G., Meyer, K. M., Bezemer, T. M., Bradford, M. A., Christensen, S., Eppinga, M. B., Fukami, T., Hemerik, L., Molofsky, J., Schädler, M., Scherber, C., Strauss, S. Y., Vos, M. & Wardle, D. A., 2009, In : Oecologia. 161, 1, p. 1-14

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  68. Endoparasitic nematodes reduce multiplication of ectoparasitic nematodes, but do not prevent growth reduction of Ammophila arenaria (L.) Link (marram grass)

    Brinkman, E. P., Van Veen, J. A. & Van der Putten, W. H., 2004, In : Applied Soil Ecology. 27, 1, p. 65-75

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  69. Environmental microarray analyses of Antarctic soil microbial communities

    Yergeau, E., Schoondermark-Stolk, S. A., Brodie, E. L., Déjean, S., DeSantis, T. Z., Gonçalves, O., Piceno, Y. M., Andersen, G. L. & Kowalchuk, G. A., 2009, In : ISME Journal. 3, 3, p. 340-351

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  70. Environmental microbial ecology in an “Omics” era : Summary report of MicroEnGen-II (Shanghai, June 12–15, 2006)

    Nelson, K. E., Methé, B. A. & Kowalchuk, G. A., 2007, In : Microbial Ecology. 53, p. 369-370

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  71. Evaluation of a simple, non-alkaline extraction protocol to quantify soil ergosterol

    De Ridder-Duine, A. S., Smant, W., Van der Wal, A., Van Veen, J. A. & De Boer, W., 2006, In : Pedobiologia. 50, 4, p. 293-300

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  72. Filipin is a reliable in situ marker of ergosterol in the plasma membrane of germinating conidia (spores) of Penicillium discolor and stains intensively at the site of germ tube formation

    van Leeuwen, M. R., Smant, W., De Boer, W. & Dijksterhuis, J., 2008, In : Journal of Microbiological Methods. 74, 2-3, p. 64-73 10 p.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  73. Finding the needles in the metagenome haystack

    Kowalchuk, G. A., Speksnijder, A. G. C. L., Zhang, K., Goodman, R. M. & Van Veen, J. A., 2007, In : Microbial Ecology. 53, 3, p. 475-485

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  74. Functional microarray analysis of nitrogen and carbon cycling genes across an Antarctic latitudinal transect

    Yergeau, E., Kang, S., He, Z., Zhou, J. N. & Kowalchuk, G. A., 2007, In : ISME Journal. 1, 2, p. 163-179

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  75. Fungal biomass development in a chronosequence of land abandonment

    Van der Wal, A., Van Veen, J. A., Smant, W., Boschker, H. T. S., Bloem, J., Kardol, P., Van der Putten, W. H. & De Boer, W., 2006, In : Soil Biology & Biochemistry. 38, 1, p. 51-60

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  76. Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices

    Croll, D., Wille, L., Gamper, H. A., Mathimaran, N., Lammers, P. J., Corradi, N. & Sanders, I. R., 2008, In : New Phytologist. 178, 3, p. 672-687

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  77. Genome-wide transcription survey on flavour production in Saccharomyces cerevisiae

    Schoondermark-Stolk, S. A., Jansen, M. D., Verkleij, A. J., Verrips, C. T., Euverink, G. J. W., Dijkhuizen, L. & Boonstra, J., 2006, In : World Journal of Microbiology and Biotechnology. 22, 12, p. 1347-1356

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  78. Genomic flank-sequencing of plasposon insertion sites for rapid identification of functional genes

    Leveau, J. H. J., Gerards, S., Fritsche, K., Zondag, G. & Van Veen, J. A., 2006, In : Journal of Microbiological Methods. 66, 2, p. 276-285

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  79. Growth of actinorhizal plants as influenced by the form of N with special reference to Myrica gale and Alnus incana

    Troelstra, S. R., Wagenaar, R. & Smant, W., 1992, In : Journal of Experimental Botany. 43, 255, p. 1349-1359

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  80. Growth of chitinolytic dune soil ß-subclass Proteobacteria in response to invading fungal hyphae

    De Boer, W., Klein Gunnewiek, P. J. A., Kowalchuk, G. A. & Van Veen, J. A., 2001, In : Applied and Environmental Microbiology. 67, 8, p. 3358-3362

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  81. Heterodera schachtii nematodes interfere with aphid-plant relations on Brassica oleracea

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van der Putten, W. H. & Van Dam, N. M., 2013, In : Journal of Chemical Ecology. 39, 9, p. 1193-1203

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  82. Identification and characterization of genes underlying chitinolysis in Collimonas fungivorans Ter331

    Fritsche, K., De Boer, W., Gerards, S., Van den Berg, M., Van Veen, J. A. & Leveau, J. H. J., 2008, In : FEMS Microbiology Ecology. 66, 1, p. 123-135

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  83. Idiosyncrasy in ecology - what's in a word?

    Hol, W. H. G., Meyer, K. M. & Van der Putten, W. H., 2011, In : Frontiers in Ecology and the Environment. 9, 8, p. 431-433

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  84. Impact of Collimonas bacteria on community composition of soil fungi

    Höppener-Ogawa, S., Leveau, J. H. J., Hundscheid, M. P. J., Van Veen, J. A. & De Boer, W., 2009, In : Environmental Microbiology. 11, 6, p. 1444-1452

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  85. Impact of elevated carbon dioxide on the rhizosphere communities of Carex arenaria and Festuca rubra

    Drigo, B., Kowalchuk, G. A., Yergeau, E., Bezemer, T. M., Boschker, H. T. S. & Van Veen, J. A., 2007, In : Global Change Biology. 13, 11, p. 2396-2410

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  86. Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities

    Epelde, L., Becerril, J. M., Kowalchuk, G. A., Deng, Y., Zhou, J. N. & Garbisu, C., 2010, In : Applied and Environmental Microbiology. 76, 23, p. 7843-7853

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  87. Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

    Folman, L. B., Klein Gunnewiek, P. J. A., Boddy, L. & De Boer, W., 2008, In : FEMS Microbiology Ecology. 63, 2, p. 181-191

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  88. Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics

    Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S. & Van Veen, J. A., 2013, In : Global Change Biology. 19, 2, p. 621-636

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  89. Inability to find consistent bacterial biocontrol agents of Pythium aphanidermatum in cucumber using screens based on ecophysiological traits

    Folman, L. B., Postma, J. & Van Veen, J. A., 2003, In : Molecular Ecology. 45, 1, p. 72-87

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  90. Ineffective Frankia and host resistance in natural populations of Alnus glutinosa (L.) Gaertn

    Wolters, D. J., Van Dijk, C., Akkermans, A. D. L. & Woldendorp, J. W., 1999, In : Acta Oecologica. 20, 2, p. 71-79

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  91. Influence of fungal-bacterial interactions on bacterial conjugation in the residuesphere

    Sengelov, G., Kowalchuk, G. A. & Sørensen, S. J., 2000, In : FEMS Microbiology Ecology. 31, 1, p. 39-45

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  92. Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils

    Yergeau, E., Bezemer, T. M., Hedlund, K., Mortimer, S. R., Kowalchuk, G. A. & Van der Putten, W. H., 2010, In : Environmental Microbiology. 12, 8, p. 2096-2106

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  93. Initial decay of woody fragments in soil is influenced by size, vertical position, nitrogen availability and soil origin

    Van der Wal, A., De Boer, W., Smant, W. & Van Veen, J. A., 2007, In : Plant and Soil. 301, 1-2, p. 189-201

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  94. In situ net N transformations in pine, fir, and net oak stands of different ages on acid sandy soil, 3 years after liming

    De Boer, W., Hundscheid, M. P. J., Schotman, J. M., Troelstra, S. R. & Laanbroek, R., 1993, In : Biology and Fertility of Soils. 15, p. 120-126

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  95. International group emphasizes microbial environmental genomics

    Kowalchuk, G. A., 2004, In : ASM News. 70, 11, p. 507-508

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  96. Interplay between Senecio jacobaea and plant, soil and aboveground insect herbivore community composition

    Bezemer, T. M., Harvey, J. A., Kowalchuk, G. A., Korpershoek, H. & Van der Putten, W. H., 2006, In : Ecology. 87, 8, p. 2002-2013

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  97. Interpretation of bioassays in the study of interactions between soil organisms and plants: involvement of nutrient factors

    Troelstra, S. R., Wagenaar, R., Smant, W. & Peters, B. A. M., 2001, In : New Phytologist. 150, 3, p. 697-706

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  98. Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression

    Garbeva, P. V. & De Boer, W., 2009, In : Microbial Ecology. 58, 1, p. 36-46

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  99. Introducing the ‘New’ Microbial Ecology

    Kowalchuk, G. A., Nelson, K. E. & Bailey, M. J., 2006, In : Microbial Ecology. 51, 1, p. 1-3

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  100. In vitro suppression of fungi caused by combinations of apparently non-antagonistic soil bacteria

    De Boer, W., Wagenaar, A. M., Klein Gunnewiek, P. J. A. & Van Veen, J. A., 2007, In : FEMS Microbiology Ecology. 59, 1, p. 177-185

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  101. Links between pseudometallophytes and rhizosphere microbial communities in a metalliferous soil

    Epelde, L., Becerril, J. M., Blanco, F., Kowalchuk, G. A. & Garbisu, C., 2012, In : Pedobiologia. 55, 4, p. 219-225

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  102. Living in a fungal world: impact of fungi on soil bacterial niche development

    De Boer, W., Folman, L. B., Summerbell, R. C. & Boddy, L., 2005, In : FEMS Microbiology Reviews. 29, 4, p. 795-811

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  103. Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood

    De Boer, W., Folman, L. B., Klein Gunnewiek, P. J. A., Svensson, T., Bastviken, D., Oberg, G., Del Rio, J. C. & Boddy, L., 2010, In : Canadian Journal of Microbiology. 56, 5, p. 380-388

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  104. Methane oxidation in soil profiles of Dutch and Finnish coniferous forests with different soil texture and atmospheric nitrogen deposition

    Saari, A., Martikainen, P. J., Ferm, A., Ruuskanen, J., De Boer, W., Troelstra, S. R. & Laanbroek, H. J., 1997, In : Soil Biology & Biochemistry. 29, 11-12, p. 1625-1632

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  105. Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

    Vorob'ev, A. V., De Boer, W., Folman, L. B., Bodelier, P. L. E., Doronina, N. V., Suzina, N. E., Trotsenko, Y. A. & Dedysh, S. N., 2009, In : International Journal of Systematic and Evolutionary Microbiology. 59, p. 2538-2545

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  106. Microbail diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness

    Garbeva, P. V., Van Veen, J. A. & van Elsas, J. D., 2004, In : Annual Review of Phytopathology. 42, p. 243-270

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  107. Microbes orchestrate life on Earth

    Kowalchuk, G. A., Jones, S. & Blackall, L. L., 2008, In : ISME Journal. 2, 8, p. 795-796

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  108. Microbial community composition affects soil fungistasis

    De Boer, W., Verheggen, P., Klein Gunnewiek, P. J. A., Kowalchuk, G. A. & Van Veen, J. A., 2003, In : Applied and Environmental Microbiology. 69, 2, p. 835-844

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  109. Microbial community responses to disease management soil treatments used in flower bulb cultivation

    Kowalchuk, G. A., Van Os, G. J., Van Aartrijk, J. & Van Veen, J. A., 2003, In : Biology and Fertility of Soils. 37, 1, p. 55-63

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  110. Microbial environmental genomics [introduction]

    Nelson, K. E., Methé, B. A. & Kowalchuk, G. A., 2007, In : Microbial Ecology. 53, 3, p. 367-368

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  111. Microbial secondary succession in a chronosequence of chalk grasslands

    Kuramae, E. E., Gamper, H. A., Yergeau, E., Piceno, Y. M., Brodie, E. L., DeSantis, T. Z., Andersen, G. L., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : ISME Journal. 4, 5, p. 711-715

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  112. Microbiology of the phyllosphere: a playground for testing ecological concepts

    Meyer, K. M. & Leveau, J. H. J., 2012, In : Oecologia. 168, 3, p. 621-629

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  113. Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences

    Speksnijder, A., Kowalchuk, G. A., De Jong, S., Kline, E., Stephen, J. R. & Laanbroek, H. J., 2001, In : Applied and Environmental Microbiology. 67, 1, p. 469-472

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  114. Molecular analysis of ammonia-oxidising bacteria in soil of successional grasslands of the Drentsche A (The Netherlands)

    Kowalchuk, G. A., Stienstra, A. W., Heilig, G. H. J., Stephen, J. R. & Woldendorp, J. W., 2000, In : FEMS Microbiology Ecology. 31, 3, p. 207-215

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  115. Molecular Analysis of Ammonia-Oxidizing Bacteria of the ß Subdivision of the Class Proteobacteria in Compost and Composted Materials

    Kowalchuk, G. A., Naoumenko, Z. S., Derikx, P. J. L., Felske, A., Stephen, J. R. & Arkhipchenko, I. A., 1999, In : Applied and Environmental Microbiology. 65, 2, p. 396-403

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  116. Molecular method to assess the diversity of Burkholderia species in environmental samples

    Salles, J., De Souza, F. A. & Van Elsas, J. D., 2002, In : Applied and Environmental Microbiology. 68, 4, p. 1595-1603

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  117. Molecular trait indicators: Moving beyond phylogeny in arbuscular mycorrhizal ecology

    Gamper, H. A., van der Heijden, M. & Kowalchuk, G. A., 2010, In : New Phytologist. 185, 1, p. 67-82

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  118. Morphological, ontogenetic and molecular characterization of Scutellospora reticulata (Glomeromycota)

    De Souza, F. A., Declerck, S., Smit, E. & Kowalchuk, G. A., 2005, In : Mycological Research. 109, p. 697-706

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  119. Multilocus genotyping of arbuscular mycorrhizal fungi and marker suitability for population genetics

    Croll, D., Corradi, N., Gamper, H. A. & Sanders, I. R., 2008, In : New Phytologist. 180, 3, p. 564-568

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  120. Multivariate analyses of Burkholderia species in soil: effect of crop and land use history

    Salles, J., Van Veen, J. A. & van Elsas, J. D., 2004, In : Applied and Environmental Microbiology. 70, 7, p. 4012-4020

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  121. Mycelium development and architecture, and spore production of Scutellospora reticulata in monoxenic culture with Ri T-DNA transformed carrot roots

    De Souza, F. A. & Declerck, S., 2003, In : Mycologia. 95, 6, p. 1004-1012

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  122. Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi

    Höppener-Ogawa, S., Leveau, J. H. J., Van Veen, J. A. & De Boer, W., 2009, In : ISME Journal. 3, 2, p. 190-198

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  123. New perspectives towards analising fungal communities in terrestrial environments

    Kowalchuk, G. A., 1999, In : Current Opinion in Biotechnology. 10, 3, p. 247-251

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  124. Nitrification in acid soils: micro-organisms and mechanisms

    De Boer, W. & Kowalchuk, G. A., 2001, In : Soil Biology & Biochemistry. 33, 7-8, p. 853-866

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  125. Nitrogen cycling and community structure of proteobacterial ß-subgroup ammonia-oxidizing bacteria within polluted marine fish farm sediments

    McCaig, A. E., Phillips, C. B., Stephen, J. R., Kowalchuk, G. A., Harvey, S. M., Herbert, R. A., Embley, T. M. & Prosser, J. I., 1999, In : Applied and Environmental Microbiology. 65, 1, p. 213-220

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  126. Nitrogen-Utilization by Plant-Species from Acid Heathland Soils .1. Comparison between Nitrate and Ammonium Nutrition at Constant Low Ph

    Troelstra, S. R., Wagenaar, R. & Smant, W., 1995, In : Journal of Experimental Botany. 46, 290, p. 1103-1112

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  127. Nitrogen-Utilization by Plant-Species from Acid Heathland Soils .2. Growth and Shoot/Root Partitioning of No3- Assimilation at Constant Low Ph and Varying No3-/Nh4+ Ratio

    Troelstra, S. R., Wagenaar, R. & Smant, W., 1995, In : Journal of Experimental Botany. 46, 290, p. 1113-1121

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  128. Nitrosomonas europaea-like bacteria detected as the dominant b-subclass Proteobacteria ammonia oxidisers in reference and limed acid forest soils

    Carnol, M., Kowalchuk, G. A. & De Boer, W., 2002, In : Soil Biology & Biochemistry. 34, 7, p. 1047-1050

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  129. No Paradox for Invasive Plants

    Meisner, A., De Boer, W., Hol, W. H. G., Krumins, J. A. & Van der Putten, W. H., 2009, In : Science Magazine. 325, 5942, p. 814-814

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  130. Nutrients decrease pyrrolizidine alkaloid concentrations in Senecio jacobaea

    Hol, W. H. G., Vrieling, K. & Van Veen, J. A., 2003, In : New Phytologist. 158, 1, p. 175-181

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  131. Patterns of bacterial diversity across a range of Antarctic terrestrial habitats

    Yergeau, E., Newsham, K. K., Pearce, D. A. & Kowalchuk, G. A., 2007, In : Environmental Microbiology. 9, 11, p. 2670-2682

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  132. Patterns of Fusarium community structure and abundance in relation to spatial, abiotic and biotic factors in soil

    Yergeau, E., Labour, K., Hamel, C., Vujanovic, V., Nakano-Hylander, A., Jeannotte, R. & St-Arnaud, M., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 34-42

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  133. Phyllosphere microbiology

    Lindow, S. E. & Leveau, J. H. J., 2002, In : Current Opinion in Biotechnology. 13, 3, p. 238-243

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  134. Phylogenetic analysis of aerobic freshwater and marine enrichment cultures efficient in hydrocarbon degradation: effect of profiling method

    Chang, Y. J., Stephen, J. R., Richter, A. P., Venosa, A. D., Bruggemann, J., MacNaughton, S. J., Kowalchuk, G. A., Haines, J. R., Kline, E. & White, D. C., 2000, In : Journal of Microbiological Methods. 40, 1, p. 19-31

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  135. Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil

    Kielak, A. M., Rodrigues, J. L. M., Kuramae, E. E., Chain, P. S. G., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 23-33

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  136. Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

    Valášková, V., De Boer, W., Klein Gunnewiek, P. J. A., Pospíšek, M. & Baldrian, P., 2009, In : ISME Journal. 3, 10, p. 1218-1221

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  137. Phylogenetic diversity of Acidobacteria in a former agricultural soil

    Kielak, A. M., Pijl, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2009, In : ISME Journal. 3, 3, p. 378-382

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  138. Phylogeny-function analysis of (meta)genomic libraries: screening for expression of ribosomal RNA genes by large-insert library fluorescent in situ hybridization (LIL-FISH)

    Leveau, J. H. J., Gerards, S., De Boer, W. & Van Veen, J. A., 2004, In : Environmental Microbiology. 6, 9, p. 990-998

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  139. Plant defence against nematodes is not mediated by changes in the soil microbial community

    Wurst, S., Van Beersum, S., Wagenaar, R., Bakx-Schotman, T., Drigo, B., Janzik, I., Lanoue, A. & Van der Putten, W. H., 2009, In : Functional Ecology. 23, 3, p. 488-495

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  140. Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils

    Verbruggen, E., Röling, W. F. M., Gamper, H. A., Kowalchuk, G. A., Verhoef, H. A. & van der Heijden, M., 2010, In : New Phytologist. 186, 4, p. 968-979

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  141. Possible mechanism for spontaneous establishment of Calluna vulgaris in a recently abandoned agricultural field

    Van der Wal, A., De Boer, W., Klein Gunnewiek, P. J. A. & Van Veen, J. A., 2009, In : Restoration Ecology. 17, 2, p. 308-313

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  142. Possible role of reactive chlorine in microbial antagonism and organic matter chlorination in terrestrial environments

    Bengtson, P., Bastviken, D., De Boer, W. & Öberg, G., 2009, In : Environmental Microbiology. 11, 6, p. 1330-1339

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  143. Predicting population and community dynamics - the type of aggregation matters

    Meyer, K. M., Schiffers, K., Münkemüller, T., Schädler, M., Calabrese, J., Basset, A., Breulmann, M., Duquesne, S., Hidding, B., Huth, A., Schöb, C. & Van de Voorde, T. F. J., 2010, In : Basic and Applied Ecology. 11, 7, p. 563-571

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  144. Predominant Bacillus spp. in agricultural soil under different management regimes detected via PCR-DGGE

    Garbeva, P. V., Van Veen, J. A. & Van Elsas, J. D., 2003, In : Microbial Ecology. 45, 3, p. 302-316

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  145. Priming of soil organic matter: Chemical structure of added compounds is more important than the energy content

    Di Lonardo, P., De Boer, W., Klein Gunnewiek, P. J. A., Hannula, S. E. & Van der Wal, A., May 2017, In : Soil Biology & Biochemistry. 108, p. 41-54 14 p.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  146. Production of antifungal compounds by Lysobacter enzymogenes isolate 3.1T8 under different conditions in relation to its efficacy as a biocontrol agent of Pythium aphanidermatum in cucumber

    Folman, L. B., De Klein, M. J. E. M., Postma, J. & Van Veen, J. A., 2004, In : Biological Control. 31, 2, p. 145-154

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  147. Production of NO and N(inf2)O by Pure Cultures of Nitrifying and Denitrifying Bacteria during Changes in Aeration

    Kester, R. A., De Boer, W. & Laanbroek, H. J., 1997, In : Applied and Environmental Microbiology. 63, 10, p. 3872-3877

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  148. Pyrrolizidine alkaloids from Senecio jacobaea affect fungal growth

    Hol, W. H. G. & Van Veen, J. A., 2002, In : Journal of Chemical Ecology. 28, 9, p. 1763-1772

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  149. Quantifying the impact of above- and belowground higher trophic levels on plant and herbivore performance by modeling

    Meyer, K. M., Vos, M., Mooij, W. M., Hol, W. H. G., Termorshuizen, A. J., Vet, L. E. M. & Van der Putten, W. H., 2009, In : Oikos. 118, 7, p. 981-990

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  150. Quantitative detection and diversity of the pyrrolnitrin biosynthetic locus in soil under different treatments

    Garbeva, P. V., Voesenek, K. & van Elsas, J. D., 2004, In : Soil Biology & Biochemistry. 36, 9, p. 1453-1463

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  151. Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArraysTM

    Van Doorn, R., Szemes, M., Bonants, P. J. M., Kowalchuk, G. A., Sallas, J., Ortenberg, E. & Schoen, C. D., 2007, In : BMC Genomics. 8, p. 276

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  152. rDNA-based characterization of a new binucleate Rhizoctonia spp. causing root rot on kale in Brazil

    Kuramae, E. E., Buzeto, A. L., Nakatani, A. K. & Souza, N. L., 2007, In : European Journal of Plant Pathology. 119, 4, p. 469-475

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  153. Real-time PCR and microscopy: Are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance?

    Gamper, H. A., Young, J. P. W., Jones, D. L. & Hodge, A., 2008, In : Fungal Genetics and Biology. 45, 5, p. 581-596

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  154. Recovery of a Nitrosomonas-like 16S rDNA sequence group from freshwater habitats

    Speksnijder, A., Kowalchuk, G. A., Roest, K. & Laanbroek, H. J., 1998, In : Systematic and Applied Microbiology. 21, 2, p. 321-330

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  155. Reduction of rare soil microbes modifies plant-herbivore interactions

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van Dam, N. M., Van Veen, J. A. & Van der Putten, W. H., 2010, In : Ecology Letters. 13, 3, p. 292-301

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  156. Relationships between Fusarium population structure, soil nutrient status and disease incidence in field-grown asparagus

    Yergeau, E., Sommerville, D. W., Maheux, E., Vujanovic, V., Hamel, C., Whalen, J. K. & St-Arnaud, M., 2006, In : FEMS Microbiology Ecology. 58, 3, p. 394-403

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  157. Relative abundance and activity of melanized hyphae in different soil ecosystems

    Van der Wal, A., Bloem, J., Mulder, C. H. & De Boer, W., 2009, In : Soil Biology & Biochemistry. 41, 2, p. 417-419

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  158. Research results on the degeneration of marram grass. Soil pathogens interfere with foredune protection by plants

    Woldendorp, J. W., 1996, In : Coastline. 5, p. 8-10

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  159. Response of the chitinolytic microbial community to chitin amendments of dune soils

    De Boer, W., Gerards, S., Klein Gunnewiek, P. J. A. & Modderman, R., 1999, In : Biology and Fertility of Soils. 29, 2, p. 170-177

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  160. Responses of Antarctic soil microbial communities and associated functions to temperature and freeze-thaw cycle frequency

    Yergeau, E. & Kowalchuk, G. A., 2008, In : Environmental Microbiology. 10, 9, p. 2223-2235

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  161. Restoration of species-rich grasslands on ex-arable land: Seed addition outweighs soil fertility reduction

    Kardol, P., Van der Wal, A., Bezemer, T. M., De Boer, W., Duyts, H., Holtkamp, R. & Van der Putten, W. H., 2008, In : Biological Conservation. 141, 9, p. 2208-2217

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  162. Rhizosphere bacteria from sites with higher fungal densities exhibit greater levels of potential antifungal properties

    De Boer, W., De Ridder-Duine, A. S., Klein Gunnewiek, P. J. A., Smant, W. & Van Veen, J. A., 2008, In : Soil Biology & Biochemistry. 40, 6, p. 1542-1544

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  163. Rhizosphere bacterial community composition in natural stands of Carex arenaria (sand sedge) is determined by bulk soil community composition

    De Ridder-Duine, A. S., Kowalchuk, G. A., Klein Gunnewiek, P. J. A., Smant, W., Van Veen, J. A. & De Boer, W., 2005, In : Soil Biology & Biochemistry. 37, 2, p. 349-357

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  164. Rhizosphere fungal communities are influenced by Senecio jacobaea pyrrolizidine alkaloid content and composition

    Kowalchuk, G. A., Hol, W. H. G. & Van Veen, J. A., 2006, In : Soil Biology & Biochemistry. 38, 9, p. 2852-2859

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  165. Rhizosphere microbial community and its response to plant species and soil history

    Garbeva, P. V., van Elsas, J. D. & Van Veen, J. A., 2008, In : Plant and Soil. 302, 1-2, p. 19-32

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  166. Robust detection and identification of multiple oomycetes and fungi in environmental samples by using a novel cleavable padlock probe-based ligation-detection assay

    Van Doorn, R., Slawiak, M., Szemes, M., Dullemans, A., Bonants, P. J. M., Kowalchuk, G. A. & Schoen, C. D., 2009, In : Applied and Environmental Microbiology. 75, 12, p. 4185-4193

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  167. Root damage and aboveground herbivory change concentration and composition of pyrrolizidine alkaloids of Senecio jacobaea

    Hol, W. H. G., Macel, M., Van Veen, J. A. & van der Meijden, E., 2004, In : Basic and Applied Ecology. 5, 3, p. 253-260

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  168. 'Root-food' and the rizosphere microbiail community composition

    De Boer, W., Kowalchuk, G. A. & Van Veen, J. A., 2006, In : New Phytologist. 170, 1, p. 3-6

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  169. Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

    Drigo, B., Pijl, A. S., Duyts, H., Kielak, A. M., Gamper, H. A., Houtekamer, M. J., Boschker, H. T. S., Bodelier, P. L. E., Whiteley, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 24, p. 10938-10942

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  170. Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

    Yergeau, E., Bokhorst, S. F., Kang, S., Zhou, J., Greer, C. W., Aerts, R. & Kowalchuk, G. A., 2012, In : ISME Journal. 6, 3, p. 692-702

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  171. Shifts in the dominant populations of ammonia-oxidizing ß subclass Proteobacteria along the eutrophic Schelde estuary

    De Bie, M. J. M., Speksnijder, A. G. C. L., Kowalchuk, G. A., Schuurman, T., Zwart, G., Stephen, J. R., Diekmann, O. E. & Laanbroek, H. J., 2001, In : Aquatic Microbial Ecology. 23, 3, p. 225-236

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  172. Short exposure to acetylene to distinguish between nitrifier and denitrifier nitrous oxide production in soil and sediment samples

    Kester, R. A., De Boer, W. & Laanbroek, H. J., 1996, In : FEMS Microbiology Ecology. 20, 2, p. 111-120

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  173. Six monophyletic lineages identified within Cryptococcus neoformans and Cryptococcus gattii by multi-locus sequence typing

    Bovers, M., Hagen, F., Kuramae, E. E. & Boekhout, T., 2008, In : Fungal Genetics and Biology. 45, 4, p. 400-421

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  174. Size and structure of bacterial, fungal and nematode communities along an Antarctic environmental gradient

    Yergeau, E., Bokhorst, S. F., Huiskes, A. H. L., Boschker, H. T. S., Aerts, R. A. M. & Kowalchuk, G. A., 2007, In : FEMS Microbiology Ecology. 59, 2, p. 436-451

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  175. Soil and plant factors driving the community of soil-borne microorganisms across chronosequences of secondary succession of chalk grasslands with neutral pH

    Kuramae, E. E., Gamper, H. A., Van Veen, J. A. & Kowalchuk, G. A., 2011, In : FEMS Microbiology Ecology. 77, 2, p. 285-294

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  176. Soil-borne microorganisms and soil-type affect pyrrolizidine alkaloids in Jacobaea vulgaris

    Joosten, L., Mulder, P. P. J., Klinkhamer, P. G. L. & Van Veen, J. A., 2009, In : Plant and Soil. 325, 1-2, p. 133-143

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  177. Soil feedback of exotic savannah grass relates to pathogen absense and mycorrhizal selectivity

    Van der Putten, W. H., Kowalchuk, G. A., Brinkman, E. P., Doodeman, G. T. A., van der Kaaij, R. M., Kamp, A. F. D., Menting, F. B. J. & Veenendaal, E. M., 2007, In : Ecology. 88, 4, p. 978-988

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  178. Soil food web structure during ecosystem development after land abandonment

    Holtkamp, R., Kardol, P., Van der Wal, A., Dekker, S. C., Van der Putten, W. H. & de Ruiter, P. C., 2008, In : Applied Soil Ecology. 39, 1, p. 23-34

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  179. Soil microbial biomass: its assay and role in turnover of organic matter C and N

    Ladd, J. N., Amato, M. & Van Veen, H., 2004, In : Soil Biology & Biochemistry. 36, 9, p. 1369-1372

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  180. Soil-Nitrogen Transformations and Nitrate Utilization by Deschampsia-Flexuosa (L) Trin at 2 Contrasting Heathland Sites

    Troelstra, S. R., Wagenaar, R., Smant, W. & De Boer, W., 1995, In : Plant and Soil. 176, 1, p. 81-93

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  181. Spatiotemporal stability of an ammonia-oxidizing community in a nitrogen-saturated forest soil

    Laverman, A. M., Speksnijder, A., Braster, M., Kowalchuk, G. A., Verhoef, H. A. & Van Verseveld, H. W., 2001, In : Microbial Ecology. 42, 1, p. 35-45

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  182. Specific detection and real-time PCR quantification of potentially mycophagous bacteria belonging to the genus Collimonas in different soil ecosystems

    Höppener-Ogawa, S., Leveau, J. H. J., Smant, W., Van Veen, J. A. & De Boer, W., 2007, In : Applied and Environmental Microbiology. 73, 13, p. 4191-4197

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  183. Specific rhizosphere bacterial and fungal groups respond differently to elevated atmospheric CO2

    Drigo, B., Van Veen, J. A. & Kowalchuk, G. A., 2009, In : ISME Journal. 3, 10, p. 1204-1217

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  184. Successional trajectories of soil nematode and plant communities in a chronosequence of ex-arable lands

    Kardol, P., Bezemer, M., Van der Wal, A. & Van der Putten, W. H., 2005, In : Biological Conservation. 126, 3, p. 317-327

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  185. Suppression of hyphal growth of soil-borne fungi by dune soils from vigorous and declining stands of Ammophila arenaria

    De Boer, W., Klein Gunnewiek, P. J. A. & Woldendorp, J. W., 1998, In : New Phytologist. 138, 1, p. 107-116

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  186. Taxon-specific PCR primers to detect two inconspicuous arbuscular mycorrhizal fungi from temperate agricultural grassland

    Gamper, H. A. & Leuchtmann, A., 2007, In : Mycorrhiza. 17, 2, p. 145-152

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  187. Temperature adaptation of soil bacterial communities along an Antarctic climate gradient: predicting responses to climate warming

    Rinnan, R., Rousk, J., Yergeau, E., Kowalchuk, G. A. & Baath, E., 2009, In : Global Change Biology. 15, 11, p. 2615-2625

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  188. Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting

    Verbruggen, E., Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Kiers, E. T., Roling, W. F. M., Kowalchuk, G. A. & Van der Heijden, M. G. A., 2012, In : Applied and Environmental Microbiology. 78, 20, p. 7384-7392

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  189. Testing the paradox of enrichment along a land use gradient in a multitrophic aboveground and belowground community

    Meyer, K. M., Vos, M., Mooij, W. M., Hol, W. H. G., Termorshuizen, A. J. & Van der Putten, W. H., 2012, In : PLoS One. 7, 11, e49034.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  190. The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods

    Joosten, L., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2010, In : Phytochemical Analysis. 21, 2, p. 197-204

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  191. The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris

    Joosten, L., Chenga, D., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2011, In : Phytochemistry. 72, 2-3, p. 214-222

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  192. The ISME Journal: Multidisciplinary Journal of Microbial Ecology

    Kowalchuk, G. A., Heidelberg, J. F. & Bailey, M. J., 2007, In : ISME Journal. 1, 1, p. 1-3

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  193. The magic and menace of metagenomics: prospects for the study of plant growth-promoting rhizobacteria

    Leveau, J. H. J., 2007, In : European Journal of Plant Pathology. 119, 3, p. 279-300

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  194. The minimum information about a genome sequence (MIGS) specification

    Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Allen, M. J., Angiuoli, S. V., Ashburner, M., Axelrod, N., Baldauf, S., Ballard, S., Boore, J., Cochrane, G., Cole, J., Dawyndt, P., De Vos, P., dePamphilis, C. & 52 othersEdwards, R., Faruque, N., Feldman, R., Gilbert, J., Gilna, P., Glöckner, F. O., Goldstein, P., Guralnick, R., Haft, D., Hancock, D., Hermjakob, H., Hertz-Fowler, C., Hugenholtz, P., Joint, I., Kagan, L., Kane, M., Kennedy, J., Kowalchuk, G. A., Kottmann, R., Kolker, E., Kravitz, S., Kyrpides, N., Leebens-Mack, J., Lewis, S. E., Li, K. W., Lister, A. L., Lord, P., Maltsev, N., Markowitz, V., Martiny, J., Methe, B., Mizrachi, I., Moxon, R., Nelson, K. E., Parkhill, J., Proctor, L., White, O., Sansone, S-A., Spiers, A., Stevens, R., Swift, P., Taylor, C., Tateno, Y., Tett, A., Turner, S., Ussery, D., Vaughan, B., Ward, N., Whetzel, T., GIil, I. S., Wilson, G. & Wipat, A., 2008, In : Nature Biotechnology. 26, 5, p. 541-547

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  195. The number of bacteria in the rhizosphere during plant development: relating colony-forming units to different reference units

    Duineveld, B. M. & Van Veen, J. A., 1999, In : Biology and Fertility of Soils. 28, 3, p. 285-291

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  196. The power of simulating experiments

    Meyer, K. M., Mooij, W. M., Vos, M., Hol, W. H. G. & Van der Putten, W. H., 2009, In : Ecological Modelling. 220, 19, p. 2594-2597

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  197. The rhizosphere zoo: An overview of plant-associated communities of microorganisms, including phages, bacteria, archaea, and fungi, and of some of their structuring factors

    Buée, M., De Boer, W., Martin, F., van Overbeek, L. & Jurkevitch, E., 2009, In : Plant and Soil. 321, 1-2, p. 189-212

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  198. Toward a Standards-Compliant Genomic and Metagenomic Publication Record

    Garrity, G., Field, D., Kyrpides, N., Hirschman, L., Sansone, S-A., Angiuoli, S. V., Cole, J., Glöckner, F. O., Kolker, E., Kowalchuk, G. A., Moran, M. A., Ussery, D. & White, O., 2008, In : OMICS: a journal of integrative biology. 12, 2, p. 157-160

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  199. Understanding the physiology of Lactobacillus plantarum at zero growth

    Goffin, P., van de Bunt, B., Giovane, M., Leveau, J. H. J., Höppener-Ogawa, S., Teusink, B. & Hugenholtz, J., 2010, In : Molecular Systems Biology. 6, p. 413

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  200. Utilization and leaching of nitrate from two Deschampsia- dominated heathland sites: a lysimeter study using intact soil columns

    Troelstra, S. R., Wagenaar, R. & Smant, W., 1997, In : Plant and Soil. 197, 1, p. 41-53

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  201. Utilization of the Plant Hormone Indole-3-Acetic Acid for Growth by Pseudomonas putida Strain 1290

    Leveau, J. H. J. & Lindow, S. E., 2005, In : Applied and Environmental Microbiology. 71, 5, p. 2365-2371

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  202. Variability of nitrification potentials in patches of undergrowth vegetation in primary Scots pine stands

    De Boer, W. & Kester, R. A., 1996, In : Forest Ecology and Management. 86, 1-3, p. 97-103

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  203. Variability of N mineralization and nitrification in a simple, simulated microbial forest soil community

    De Boer, W., Klein Gunnewiek, P. J. A. & Parkinson, D., 1996, In : Soil Biology & Biochemistry. 28, 2, p. 203-211

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  204. Volatile-mediated interactions between phylogenetically different soil bacteria

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : Frontiers in Microbiology. 5, p. 289

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  205. Volatiles produced by the mycophagous soil bacterium Collimonas

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : FEMS Microbiology Ecology. 87, 3, p. 639-649

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  206. Chapter › Scientific › Not peer-reviewed
  207. A combined phospholipid and 16S rDNA PCR-DGGE analysis to study bioremediative communities in situ

    MacNaughton, S. J., Stephen, J. R., Chang, Y. J., Davis, G. A., Kowalchuk, G. A., Gan, Y-D., Brüggemann, J. & White, D. C., 2001, Molecular Environmental Microbiology: Protocols and Applications. Rochelle, P. (ed.). Horizon Scientific Press, p. 141-160

    Research output: Chapter in book/volumeChapterScientific

  208. Are chitinolytic rhizosphere bacteria really beneficial to plants?

    De Boer, W. & Van Veen, J. A., 2001, Biotic Interactions in Plant-Pathogen Associations. Jeger, M. J. & Spence, N. J. (eds.). Wallingford: CAB International, p. 121-130

    Research output: Chapter in book/volumeChapterScientific

  209. Assessing bacterial and fungal community structure in soil using ribosomal RNA and other structural gene markers

    Kowalchuk, G. A., Drigo, B., Yergeau, E. & Van Veen, J. A., 2006, Nucleic Acids and Proteins in Soil. Nannipieri, P. & Smalla, K. (eds.). Heidelberg: Springer, p. 159-188

    Research output: Chapter in book/volumeChapterScientific

  210. Biocontrol of plant pathogens: Principles, promises and pitfalls

    Lugtenberg, B. & Leveau, J. H. J., 2007, The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface. Pinton, R., Varanini, Z. & Nannipieri, P. (eds.). Boca Raton, Fla: CRC Press, p. 267-296

    Research output: Chapter in book/volumeChapterScientific

  211. Community Analysis using PCR- Denaturing Gradient Gel Electrophoresis (DGGE)

    Kowalchuk, G. A. & Smit, E., 2004, Molecular Microbial Ecology Manual, 2nd edition. Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. L. & van Elsas, J. D. (eds.). Dordrecht: Kluwer Academic Publishers, p. 771-788 Chap 3.14

    Research output: Chapter in book/volumeChapterScientific

  212. Concepts and methods to assess the phytosanitary quality of soils

    Alabouvette, C., Raaijmaker, J., De Boer, W., Notz, R., Défago, G., Steinberg, C. & Lemanceau, P., 2006, Microbiological Methods for Assessing Soil Quality. Bloem, J. (ed.). CAB International, p. 257-269

    Research output: Chapter in book/volumeChapterScientific

  213. Detection of bacterial lactone quorum sensing signals

    Rice, S. A., Kjelleberg, S., Givskog, M., De Boer, W. & Chernin, L. S., 2004, Molecular Microbial Ecology Manual, 2nd edition. Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. L. & van Elsas, J. D. (eds.). Dordrecht: Kluwer Academic Publishers, p. 1629-1649 Chap 8.04

    Research output: Chapter in book/volumeChapterScientific

  214. Fungal community analysis using denaturing gradient gel electrophoresis (DGGE)

    Kowalchuk, G. A., 1999, Molecular Microbial Ecology Manual 3.4.6:. D. L. Akkermans, A., D. Van Elsas, J. & De Bruijn, F. J. (eds.). Dordrecht, the Netherlands: Kluwer Academic Publishers, p. 1-16

    Research output: Chapter in book/volumeChapterScientific

  215. Interactions between saprotrophic basidiomycetes and bacteria

    De Boer, W. & Van der Wal, A., 2008, British Mycological Society Symposia Series, Volume 28. Boddy, L., Frankland, J. C. & van West, P. (eds.). Amsterdam: Elsevier, p. 141-151

    Research output: Chapter in book/volumeChapterScientific

  216. Leaf surface sugars

    Leveau, J. H. J., 2004, Encyclopeadia of Plant and Crop Science. Goodman, R. M. (ed.). New York: Marcel Dekker, p. 642-645

    Research output: Chapter in book/volumeChapterScientific

  217. Life Cycle of Glomus Species in Monoxenic Culture

    Dalpé, Y., De Souza, F. A. & Declerck, S., 2005, In Vitro Culture of Mycorrhizas. Declerck, S., Strullu, D-G. & Fortin, A. (eds.). Berlin: Springer, p. 49-71 (Soil Biology Vol. 4).

    Research output: Chapter in book/volumeChapterScientific

  218. Life History Strategies in Gigasporaceae: insight from monoxenic culture

    De Souza, F. A., Dalpé, Y., Declerck, S., De la Providencia, I. E. & Séjalon-Delmas, N., 2005, In Vitro Culture of Mycorrhizas. Declerck, S., Strullu, D-G. & Fortin, A. (eds.). Berlin: Springer, p. 73-91 (Soil Biology Vol. 4).

    Research output: Chapter in book/volumeChapterScientific

  219. Methodological approaches to the study of carbon flow and the associated microbial population dynamics in the rhizosphere

    Van Veen, J. A., Morgan, J. A. W. & Whipps, J. M., 2007, The Rhizosphere: Biochemistry and Organic Substances at the Soil-Plant Interface. Pinton, R., Varanini, Z. & Nannipieri, P. (eds.). Boca Raton, Fla: CRC Press, p. 371-399

    Research output: Chapter in book/volumeChapterScientific

  220. Microbial communities in the phyllosphere

    Leveau, J. H. J., 2006, Biology of the Plant Cuticle. Riederer, M. & Müller, C. (eds.). Oxford: Blackwell, p. 334-367

    Research output: Chapter in book/volumeChapterScientific

  221. Microbial diversity underground: do we need to protect the Earth's greatest source of biodiversity?

    Kowalchuk, G. A., 2008, Forgotten kingdoms : proceedings of a seminar on the conservation of small and hidden species at the occasion of the retirement of Wim Bergmans as scientific director of IUCN NL. Bergmans, W., de Iongh, H. & Simons, H. (eds.). Amsterdam [etc.]: IUCN National Committee of the Netherlands [etc.], p. 17-29

    Research output: Chapter in book/volumeChapterScientific

  222. Molecular detection of fungal communities in soil

    Smit, E., De Souza, F. A. & Landeweert, R., 2005, Molecular Microbial Ecology. Osborn, A. M. & Smith, C. J. (eds.). New York: Taylor & Francis Group, p. 303-316

    Research output: Chapter in book/volumeChapterScientific

  223. Nitrogen: recent developments in related microbial processes

    Van Veen, J. A., 2000, Biological Resource Management, Connecting Science and Policy. Balazs, E. (ed.). Berlin: Springer, p. 71-80

    Research output: Chapter in book/volumeChapterScientific

  224. Reporter gene systems useful in evaluating in situ gene expression by soil- and plant-associated bacteria

    Leveau, J. H. J., Loper, J. E. & Lindow, S. E., 2007, Manual of Environmental Microbiology, 3rd edition. Hurst, C. J., Crawford, R. L., Garland, J. L., Lipson, D. A., Mills, A. L. & Stetzenbach, L. D. (eds.). Washington, D.C.: American Society for Microbiology, p. 734-747

    Research output: Chapter in book/volumeChapterScientific

  225. Rhizosphere Responses to Elevated CO2

    Drigo, B. & Kowalchuk, G. A., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1063-1074 Chap 100

    Research output: Chapter in book/volumeChapterScientific

  226. Ribotyping methods for assessment of in situ microbial community structure

    Stephen, J. R. & Kowalchuk, G. A., 2002, Encyclopedia of Environmental Microbiology. Bitton, G. (ed.). New York: John Wiley and Sons Ltd, p. 2728-2741

    Research output: Chapter in book/volumeChapterScientific

  227. Stimulation of Rhizosphere Microbial Communities During Chemophytostabilization of a Pb–Zn Mine Soil

    Galenda, M. A., Epelde, L., Gomez-Sagasti, M. T., Barrutia, J. M., Hernandez, A., Becerril, J. M., Kowalchuk, G. A. & Garbiscu, C., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1013-1022 Chap 95

    Research output: Chapter in book/volumeChapterScientific

  228. The rhizosphere-historical and future perspectives from a microbiologist's viewpoint

    Van Veen, J. A., 2005, Rhizosphere 2004-Perspectives and challenges : A Tribute to Lorenz Hiltner. Hartmann, A. (ed.). Neuherberg: GSF - Forschungszentrum für Umwelt und Gesundheit, p. 29-34

    Research output: Chapter in book/volumeChapterScientific

  229. Valid recovery of nucleic acid sequence information from high contamination risk samples – Ancient DNA and environmental DNA

    Kowalchuk, G. A., Austin, J. J., Gooding, P. S. & Stephen, J. R., 2007, New High Throughput Technologies for DNA Sequencing and Genomics. Mitchelson, K. R. (ed.). Amsterdam: Elsevier, p. 357-371

    Research output: Chapter in book/volumeChapterScientific

  230. Paper › Scientific › Not peer-reviewed
  231. Disentangling drivers of parasitoid foraging behaviour in structured plant communities

    Van Waveren, C-S., Meyer, K. M., Wiegand, K. & Bezemer, T. M., 2010.

    Research output: Contribution to conferencePaperScientific

  232. Book › Scientific › Not peer-reviewed
  233. Interactions in the microbial world: Proc. 9th International Symposium on Microbial Ecology, Amsterdam, 2001

    Van Veen, J. A., Laanbroek, H. J. & De Vos, W. M., 2002, Dordrecht: Kluwer Academic Publishers. 713 p. (Antonie van Leeuwenhoek)

    Research output: Book/ReportBookScientific

  234. Molecular Microbial Ecology Manual

    Kowalchuk, G. A., de Bruijn, F. J., Head, I. M., Akkermans, A. D. L. & Van Elsas, J. D., 2004, Dordrecht: Kluwer Academic Publishers. 1774 p.

    Research output: Book/ReportBookScientific

  235. PhD thesis › Scientific
  236. Biology, ecology and evolution of the family Gigasporaceae, arbuscular mycorrhizal fungi (Glomeromycota)

    De Souza, F. A., 2005, Leiden: Rijksuniversiteit Leiden. 157 p.

    Research output: PhD ThesisPhD thesisScientific

  237. Burkholderia community structure in soils under different agricultural management

    Salles, J. F., 13 May 2005, Leiden: Universiteit Leiden. 143 p.

    Research output: PhD ThesisPhD thesisScientific

  238. Ecology of mycophagous Collimonas bacteria in soil

    Höppener-Ogawa, S., 15 Dec 2008, Leiden: Leiden University. 136 p.

    Research output: PhD ThesisPhD thesisScientific

  239. Effects of global warming on Antarctic soil microorganisms and associated functions

    Yergeau, E., 30 Jun 2008, Amsterdam: Vrije Universiteit. 174 p.

    Research output: PhD ThesisPhD thesisScientific

  240. New strategies for the accurate identification and detection of plant pathogens

    Van Doorn, R., 2012, Amsterdam: Vrije Universiteit.

    Research output: PhD ThesisPhD thesisScientific

  241. Pyrrolizidine alkaloid composition in the plant and its interaction with the soil microbial community

    Joosten, L., 2012, Leiden: Leiden University.

    Research output: PhD ThesisPhD thesisScientific

  242. The impact of increased atmospheric carbon dioxide on microbial community dynamics in the rhizosphere

    Drigo, B., 2009, Leiden: Leiden University. 165 p.

    Research output: PhD ThesisPhD thesisScientific

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