1. 2014
  2. Volatile-mediated interactions between phylogenetically different soil bacteria

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : Frontiers in Microbiology. 5, p. 289

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  3. Volatiles produced by the mycophagous soil bacterium Collimonas

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : FEMS Microbiology Ecology. 87, 3, p. 639-649

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  4. 2013
  5. Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

    Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A. & Tsai, S. M., 2013, In : FEMS Microbiology Ecology. 83, 3, p. 607-621

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  6. Heterodera schachtii nematodes interfere with aphid-plant relations on Brassica oleracea

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van der Putten, W. H. & Van Dam, N. M., 2013, In : Journal of Chemical Ecology. 39, 9, p. 1193-1203

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  7. Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics

    Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S. & Van Veen, J. A., 2013, In : Global Change Biology. 19, 2, p. 621-636

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  8. Rhizosphere Responses to Elevated CO2

    Drigo, B. & Kowalchuk, G. A., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1063-1074 Chap 100

    Research output: Chapter in book/volumeChapterScientific

  9. Stimulation of Rhizosphere Microbial Communities During Chemophytostabilization of a Pb–Zn Mine Soil

    Galenda, M. A., Epelde, L., Gomez-Sagasti, M. T., Barrutia, J. M., Hernandez, A., Becerril, J. M., Kowalchuk, G. A. & Garbiscu, C., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1013-1022 Chap 95

    Research output: Chapter in book/volumeChapterScientific

  10. 2012
  11. Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood

    Kulichevskaya, I. S., Kostina, L. A., Valášková, V., Rijpstra, I. C., Sinninghe Damsté, J. S., De Boer, W. & Dedysh, S. N., 2012, In : International Journal of Systematic and Evolutionary Microbiology. 62, PT_7, p. 1512-1520

    Research output: Contribution to journal/periodicalArticleScientific

  12. A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

    Vos, M., Quince, C., Pijl, A. S., De Hollander, M. & Kowalchuk, G. A., 2012, In : PLoS One. 7, 2, e30600.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  13. Community patterns of soil bacteria and nematodes in relation to geographic distance

    Monroy, F., Van der Putten, W. H., Yergeau, E., Mortimer, S. R., Duyts, H. & Bezemer, T. M., 2012, In : Soil Biology & Biochemistry. 45, p. 1-7

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  14. Links between pseudometallophytes and rhizosphere microbial communities in a metalliferous soil

    Epelde, L., Becerril, J. M., Blanco, F., Kowalchuk, G. A. & Garbisu, C., 2012, In : Pedobiologia. 55, 4, p. 219-225

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  15. Microbiology of the phyllosphere: a playground for testing ecological concepts

    Meyer, K. M. & Leveau, J. H. J., 2012, In : Oecologia. 168, 3, p. 621-629

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  16. New strategies for the accurate identification and detection of plant pathogens

    Van Doorn, R., 2012, Amsterdam: VU University Press.

    Research output: PhD ThesisPhD thesisScientific

  17. Pyrrolizidine alkaloid composition in the plant and its interaction with the soil microbial community

    Joosten, L., 2012, Leiden: Leiden University Press.

    Research output: PhD ThesisPhD thesisScientific

  18. Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

    Yergeau, E., Bokhorst, S. F., Kang, S., Zhou, J., Greer, C. W., Aerts, R. & Kowalchuk, G. A., 2012, In : ISME Journal. 6, 3, p. 692-702

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  19. Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting

    Verbruggen, E., Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Kiers, E. T., Roling, W. F. M., Kowalchuk, G. A. & Van der Heijden, M. G. A., 2012, In : Applied and Environmental Microbiology. 78, 20, p. 7384-7392

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  20. Testing the paradox of enrichment along a land use gradient in a multitrophic aboveground and belowground community

    Meyer, K. M., Vos, M., Mooij, W. M., Hol, W. H. G., Termorshuizen, A. J. & Van der Putten, W. H., 2012, In : PLoS One. 7, 11, e49034.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  21. 2011
  22. An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

    Mondego, J. M. C., Vidal, R. O., Carazzolle, M. F., Tokuda, E. K., Parizzi, L. P., Costa, G. G. L., Pereira, L. F. P., Andrade, A. C., Colombo, C. A., Vieira, L. G. E., Pereira, G. A. G. & Kuramae, E. E., 2011, In : BMC Plant Biology. 11, p. 30

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  23. Defensive properties of pyrrolizidine alkaloids against microorganisms

    Joosten, L. & Van Veen, J. A., 2011, In : Phytochemistry Reviews. 10, 1, p. 127-136

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  24. Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana.

    Doornbos, R. F., Geraats, B. P. J., Kuramae, E. E., van Loon, L. C. & Bakker, P., 2011, In : Molecular Plant-Microbe Interactions. 24, 4, p. 395-407

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  25. Idiosyncrasy in ecology - what's in a word?

    Hol, W. H. G., Meyer, K. M. & Van der Putten, W. H., 2011, In : Frontiers in Ecology and the Environment. 9, 8, p. 431-433

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  26. Soil and plant factors driving the community of soil-borne microorganisms across chronosequences of secondary succession of chalk grasslands with neutral pH

    Kuramae, E. E., Gamper, H. A., Van Veen, J. A. & Kowalchuk, G. A., 2011, In : FEMS Microbiology Ecology. 77, 2, p. 285-294

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  27. The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris

    Joosten, L., Chenga, D., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2011, In : Phytochemistry. 72, 2-3, p. 214-222

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  28. 2010
  29. Comparing arbuscular mycorrhizal communities of individual plants in a grassland biodiversity experiment

    Van de Voorde, T. F. J., Van der Putten, W. H., Gamper, H. A., Hol, W. H. G. & Bezemer, T. M., 2010, In : New Phytologist. 186, 3, p. 746-754

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  30. Disentangling drivers of parasitoid foraging behaviour in structured plant communities

    Van Waveren, C-S., Meyer, K. M., Wiegand, K. & Bezemer, T. M., 2010.

    Research output: Contribution to conferencePaperScientific

  31. Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities

    Epelde, L., Becerril, J. M., Kowalchuk, G. A., Deng, Y., Zhou, J. N. & Garbisu, C., 2010, In : Applied and Environmental Microbiology. 76, 23, p. 7843-7853

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  32. Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils

    Yergeau, E., Bezemer, T. M., Hedlund, K., Mortimer, S. R., Kowalchuk, G. A. & Van der Putten, W. H., 2010, In : Environmental Microbiology. 12, 8, p. 2096-2106

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  33. Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood

    De Boer, W., Folman, L. B., Klein Gunnewiek, P. J. A., Svensson, T., Bastviken, D., Oberg, G., Del Rio, J. C. & Boddy, L., 2010, In : Canadian Journal of Microbiology. 56, 5, p. 380-388

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  34. Microbial secondary succession in a chronosequence of chalk grasslands

    Kuramae, E. E., Gamper, H. A., Yergeau, E., Piceno, Y. M., Brodie, E. L., DeSantis, T. Z., Andersen, G. L., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : ISME Journal. 4, 5, p. 711-715

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  35. Molecular trait indicators: Moving beyond phylogeny in arbuscular mycorrhizal ecology

    Gamper, H. A., van der Heijden, M. & Kowalchuk, G. A., 2010, In : New Phytologist. 185, 1, p. 67-82

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  36. Patterns of Fusarium community structure and abundance in relation to spatial, abiotic and biotic factors in soil

    Yergeau, E., Labour, K., Hamel, C., Vujanovic, V., Nakano-Hylander, A., Jeannotte, R. & St-Arnaud, M., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 34-42

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  37. Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil

    Kielak, A. M., Rodrigues, J. L. M., Kuramae, E. E., Chain, P. S. G., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 23-33

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  38. Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils

    Verbruggen, E., Röling, W. F. M., Gamper, H. A., Kowalchuk, G. A., Verhoef, H. A. & van der Heijden, M., 2010, In : New Phytologist. 186, 4, p. 968-979

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  39. Predicting population and community dynamics - the type of aggregation matters

    Meyer, K. M., Schiffers, K., Münkemüller, T., Schädler, M., Calabrese, J., Basset, A., Breulmann, M., Duquesne, S., Hidding, B., Huth, A., Schöb, C. & Van de Voorde, T. F. J., 2010, In : Basic and Applied Ecology. 11, 7, p. 563-571

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  40. Reduction of rare soil microbes modifies plant-herbivore interactions

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van Dam, N. M., Van Veen, J. A. & Van der Putten, W. H., 2010, In : Ecology Letters. 13, 3, p. 292-301

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  41. Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

    Drigo, B., Pijl, A. S., Duyts, H., Kielak, A. M., Gamper, H. A., Houtekamer, M. J., Boschker, H. T. S., Bodelier, P. L. E., Whiteley, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 24, p. 10938-10942

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  42. The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods

    Joosten, L., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2010, In : Phytochemical Analysis. 21, 2, p. 197-204

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  43. Understanding the physiology of Lactobacillus plantarum at zero growth

    Goffin, P., van de Bunt, B., Giovane, M., Leveau, J. H. J., Höppener-Ogawa, S., Teusink, B. & Hugenholtz, J., 2010, In : Molecular Systems Biology. 6, p. 413

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  44. 2009
  45. Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel Internal Amplification Control approach using Biotrove OpenArrays

    Van Doorn, R., Klerks, M., van Gent-Pelzer, M., Speksnijder, A. G. C. L., Kowalchuk, G. A. & Schoen, C. D., 2009, In : Applied and Environmental Microbiology. 75, 22, p. 7253-7260

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  46. Bacteria, not archaea, restore nitrification in a zinc-contaminated soil

    Mertens, J., Broos, K., Wakelin, S. A., Kowalchuk, G. A., Springael, D. & Smolders, E., 2009, In : ISME Journal. 3, 8, p. 916-923

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  47. Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus

    Gamper, H. A., Walker, C. & Schüßler, A., 2009, In : New Phytologist. 182, 2, p. 495-506

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  48. Empirical and theoretical challenges in aboveground–belowground ecology

    Van der Putten, W. H., Bardgett, R. D., de Ruiter, P. C., Hol, W. H. G., Meyer, K. M., Bezemer, T. M., Bradford, M. A., Christensen, S., Eppinga, M. B., Fukami, T., Hemerik, L., Molofsky, J., Schädler, M., Scherber, C., Strauss, S. Y., Vos, M. & Wardle, D. A., 2009, In : Oecologia. 161, 1, p. 1-14

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  49. Environmental microarray analyses of Antarctic soil microbial communities

    Yergeau, E., Schoondermark-Stolk, S. A., Brodie, E. L., Déjean, S., DeSantis, T. Z., Gonçalves, O., Piceno, Y. M., Andersen, G. L. & Kowalchuk, G. A., 2009, In : ISME Journal. 3, 3, p. 340-351

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  50. Impact of Collimonas bacteria on community composition of soil fungi

    Höppener-Ogawa, S., Leveau, J. H. J., Hundscheid, M. P. J., Van Veen, J. A. & De Boer, W., 2009, In : Environmental Microbiology. 11, 6, p. 1444-1452

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  51. Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression

    Garbeva, P. V. & De Boer, W., 2009, In : Microbial Ecology. 58, 1, p. 36-46

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  52. Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

    Vorob'ev, A. V., De Boer, W., Folman, L. B., Bodelier, P. L. E., Doronina, N. V., Suzina, N. E., Trotsenko, Y. A. & Dedysh, S. N., 2009, In : International Journal of Systematic and Evolutionary Microbiology. 59, p. 2538-2545

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  53. Mycophagous growth of Collimonas bacteria in natural soils, impact on fungal biomass turnover and interactions with mycophagous Trichoderma fungi

    Höppener-Ogawa, S., Leveau, J. H. J., Van Veen, J. A. & De Boer, W., 2009, In : ISME Journal. 3, 2, p. 190-198

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

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