1. 2017
  2. Priming of soil organic matter: Chemical structure of added compounds is more important than the energy content

    Di Lonardo, P., De Boer, W., Klein Gunnewiek, P. J. A., Hannula, S. E. & Van der Wal, A., May 2017, In : Soil Biology & Biochemistry. 108, p. 41-54 14 p.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  3. 2014
  4. Volatile-mediated interactions between phylogenetically different soil bacteria

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : Frontiers in Microbiology. 5, p. 289

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  5. Volatiles produced by the mycophagous soil bacterium Collimonas

    Garbeva, P. V., Hordijk, C. A., Gerards, S. & De Boer, W., 2014, In : FEMS Microbiology Ecology. 87, 3, p. 639-649

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  6. 2013
  7. Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

    Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A. & Tsai, S. M., 2013, In : FEMS Microbiology Ecology. 83, 3, p. 607-621

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  8. Heterodera schachtii nematodes interfere with aphid-plant relations on Brassica oleracea

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van der Putten, W. H. & Van Dam, N. M., 2013, In : Journal of Chemical Ecology. 39, 9, p. 1193-1203

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  9. Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics

    Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S. & Van Veen, J. A., 2013, In : Global Change Biology. 19, 2, p. 621-636

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  10. Rhizosphere Responses to Elevated CO2

    Drigo, B. & Kowalchuk, G. A., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1063-1074 Chap 100

    Research output: Chapter in book/volumeChapterScientific

  11. Stimulation of Rhizosphere Microbial Communities During Chemophytostabilization of a Pb–Zn Mine Soil

    Galenda, M. A., Epelde, L., Gomez-Sagasti, M. T., Barrutia, J. M., Hernandez, A., Becerril, J. M., Kowalchuk, G. A. & Garbiscu, C., 2013, Molecular Microbial Ecology of The Rhizosphere. de Bruijn, F. J. (ed.). Wiley-Blackwell, p. 1013-1022 Chap 95

    Research output: Chapter in book/volumeChapterScientific

  12. 2012
  13. Acidicapsa borealis gen. nov., sp. nov. and Acidicapsa ligni sp. nov., subdivision 1 Acidobacteria from Sphagnum peat and decaying wood

    Kulichevskaya, I. S., Kostina, L. A., Valášková, V., Rijpstra, I. C., Sinninghe Damsté, J. S., De Boer, W. & Dedysh, S. N., 2012, In : International Journal of Systematic and Evolutionary Microbiology. 62, PT_7, p. 1512-1520

    Research output: Contribution to journal/periodicalArticleScientific

  14. A comparison of rpoB and 16S rRNA as markers in pyrosequencing studies of bacterial diversity

    Vos, M., Quince, C., Pijl, A. S., De Hollander, M. & Kowalchuk, G. A., 2012, In : PLoS One. 7, 2, e30600.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  15. Community patterns of soil bacteria and nematodes in relation to geographic distance

    Monroy, F., Van der Putten, W. H., Yergeau, E., Mortimer, S. R., Duyts, H. & Bezemer, T. M., 2012, In : Soil Biology & Biochemistry. 45, p. 1-7

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  16. Links between pseudometallophytes and rhizosphere microbial communities in a metalliferous soil

    Epelde, L., Becerril, J. M., Blanco, F., Kowalchuk, G. A. & Garbisu, C., 2012, In : Pedobiologia. 55, 4, p. 219-225

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  17. Microbiology of the phyllosphere: a playground for testing ecological concepts

    Meyer, K. M. & Leveau, J. H. J., 2012, In : Oecologia. 168, 3, p. 621-629

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  18. New strategies for the accurate identification and detection of plant pathogens

    Van Doorn, R., 2012, Amsterdam: Vrije Universiteit.

    Research output: PhD ThesisPhD thesisScientific

  19. Pyrrolizidine alkaloid composition in the plant and its interaction with the soil microbial community

    Joosten, L., 2012, Leiden: Leiden University.

    Research output: PhD ThesisPhD thesisScientific

  20. Shifts in soil microorganisms in response to warming are consistent across a range of Antarctic environments

    Yergeau, E., Bokhorst, S. F., Kang, S., Zhou, J., Greer, C. W., Aerts, R. & Kowalchuk, G. A., 2012, In : ISME Journal. 6, 3, p. 692-702

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  21. Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting

    Verbruggen, E., Kuramae, E. E., Hillekens, R. H. E., De Hollander, M., Kiers, E. T., Roling, W. F. M., Kowalchuk, G. A. & Van der Heijden, M. G. A., 2012, In : Applied and Environmental Microbiology. 78, 20, p. 7384-7392

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  22. Testing the paradox of enrichment along a land use gradient in a multitrophic aboveground and belowground community

    Meyer, K. M., Vos, M., Mooij, W. M., Hol, W. H. G., Termorshuizen, A. J. & Van der Putten, W. H., 2012, In : PLoS One. 7, 11, e49034.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  23. 2011
  24. An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora

    Mondego, J. M. C., Vidal, R. O., Carazzolle, M. F., Tokuda, E. K., Parizzi, L. P., Costa, G. G. L., Pereira, L. F. P., Andrade, A. C., Colombo, C. A., Vieira, L. G. E., Pereira, G. A. G. & Kuramae, E. E., 2011, In : BMC Plant Biology. 11, p. 30

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  25. Defensive properties of pyrrolizidine alkaloids against microorganisms

    Joosten, L. & Van Veen, J. A., 2011, In : Phytochemistry Reviews. 10, 1, p. 127-136

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  26. Effects of jasmonic acid, ethylene, and salicylic acid signaling on the rhizosphere bacterial community of Arabidopsis thaliana.

    Doornbos, R. F., Geraats, B. P. J., Kuramae, E. E., van Loon, L. C. & Bakker, P., 2011, In : Molecular Plant-Microbe Interactions. 24, 4, p. 395-407

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  27. Idiosyncrasy in ecology - what's in a word?

    Hol, W. H. G., Meyer, K. M. & Van der Putten, W. H., 2011, In : Frontiers in Ecology and the Environment. 9, 8, p. 431-433

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  28. Soil and plant factors driving the community of soil-borne microorganisms across chronosequences of secondary succession of chalk grasslands with neutral pH

    Kuramae, E. E., Gamper, H. A., Van Veen, J. A. & Kowalchuk, G. A., 2011, In : FEMS Microbiology Ecology. 77, 2, p. 285-294

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  29. The genotype dependent presence of pyrrolizidine alkaloids as tertiary amine in Jacobaea vulgaris

    Joosten, L., Chenga, D., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2011, In : Phytochemistry. 72, 2-3, p. 214-222

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  30. 2010
  31. Comparing arbuscular mycorrhizal communities of individual plants in a grassland biodiversity experiment

    Van de Voorde, T. F. J., Van der Putten, W. H., Gamper, H. A., Hol, W. H. G. & Bezemer, T. M., 2010, In : New Phytologist. 186, 3, p. 746-754

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  32. Disentangling drivers of parasitoid foraging behaviour in structured plant communities

    Van Waveren, C-S., Meyer, K. M., Wiegand, K. & Bezemer, T. M., 2010.

    Research output: Contribution to conferencePaperScientific

  33. Impact of metal pollution and Thlaspi caerulescens growth on soil microbial communities

    Epelde, L., Becerril, J. M., Kowalchuk, G. A., Deng, Y., Zhou, J. N. & Garbisu, C., 2010, In : Applied and Environmental Microbiology. 76, 23, p. 7843-7853

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  34. Influences of space, soil, nematodes and plants on microbial community composition of chalk grassland soils

    Yergeau, E., Bezemer, T. M., Hedlund, K., Mortimer, S. R., Kowalchuk, G. A. & Van der Putten, W. H., 2010, In : Environmental Microbiology. 12, 8, p. 2096-2106

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  35. Mechanism of antibacterial activity of the white-rot fungus Hypholoma fasciculare colonizing wood

    De Boer, W., Folman, L. B., Klein Gunnewiek, P. J. A., Svensson, T., Bastviken, D., Oberg, G., Del Rio, J. C. & Boddy, L., 2010, In : Canadian Journal of Microbiology. 56, 5, p. 380-388

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  36. Microbial secondary succession in a chronosequence of chalk grasslands

    Kuramae, E. E., Gamper, H. A., Yergeau, E., Piceno, Y. M., Brodie, E. L., DeSantis, T. Z., Andersen, G. L., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : ISME Journal. 4, 5, p. 711-715

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  37. Molecular trait indicators: Moving beyond phylogeny in arbuscular mycorrhizal ecology

    Gamper, H. A., van der Heijden, M. & Kowalchuk, G. A., 2010, In : New Phytologist. 185, 1, p. 67-82

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  38. Patterns of Fusarium community structure and abundance in relation to spatial, abiotic and biotic factors in soil

    Yergeau, E., Labour, K., Hamel, C., Vujanovic, V., Nakano-Hylander, A., Jeannotte, R. & St-Arnaud, M., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 34-42

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  39. Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil

    Kielak, A. M., Rodrigues, J. L. M., Kuramae, E. E., Chain, P. S. G., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : FEMS Microbiology Ecology. 71, 1, p. 23-33

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  40. Positive effects of organic farming on below-ground mutualists: large-scale comparison of mycorrhizal fungal communities in agricultural soils

    Verbruggen, E., Röling, W. F. M., Gamper, H. A., Kowalchuk, G. A., Verhoef, H. A. & van der Heijden, M., 2010, In : New Phytologist. 186, 4, p. 968-979

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  41. Predicting population and community dynamics - the type of aggregation matters

    Meyer, K. M., Schiffers, K., Münkemüller, T., Schädler, M., Calabrese, J., Basset, A., Breulmann, M., Duquesne, S., Hidding, B., Huth, A., Schöb, C. & Van de Voorde, T. F. J., 2010, In : Basic and Applied Ecology. 11, 7, p. 563-571

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  42. Reduction of rare soil microbes modifies plant-herbivore interactions

    Hol, W. H. G., De Boer, W., Termorshuizen, A. J., Meyer, K. M., Schneider, J. H. M., Van Dam, N. M., Van Veen, J. A. & Van der Putten, W. H., 2010, In : Ecology Letters. 13, 3, p. 292-301

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  43. Shifting carbon flow from roots into associated microbial communities in response to elevated atmospheric CO2

    Drigo, B., Pijl, A. S., Duyts, H., Kielak, A. M., Gamper, H. A., Houtekamer, M. J., Boschker, H. T. S., Bodelier, P. L. E., Whiteley, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2010, In : Proceedings of the National Academy of Sciences of the United States of America. 107, 24, p. 10938-10942

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  44. The analysis of pyrrolizidine alkaloids in Jacobaea vulgaris; a comparison of extraction and detection methods

    Joosten, L., Mulder, P. P. J., Vrieling, K., Van Veen, J. A. & Klinkhamer, P. G. L., 2010, In : Phytochemical Analysis. 21, 2, p. 197-204

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  45. Understanding the physiology of Lactobacillus plantarum at zero growth

    Goffin, P., van de Bunt, B., Giovane, M., Leveau, J. H. J., Höppener-Ogawa, S., Teusink, B. & Hugenholtz, J., 2010, In : Molecular Systems Biology. 6, p. 413

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  46. 2009
  47. Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel Internal Amplification Control approach using Biotrove OpenArrays

    Van Doorn, R., Klerks, M., van Gent-Pelzer, M., Speksnijder, A. G. C. L., Kowalchuk, G. A. & Schoen, C. D., 2009, In : Applied and Environmental Microbiology. 75, 22, p. 7253-7260

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  48. Bacteria, not archaea, restore nitrification in a zinc-contaminated soil

    Mertens, J., Broos, K., Wakelin, S. A., Kowalchuk, G. A., Springael, D. & Smolders, E., 2009, In : ISME Journal. 3, 8, p. 916-923

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  49. Diversispora celata sp. nov: molecular ecology and phylotaxonomy of an inconspicuous arbuscular mycorrhizal fungus

    Gamper, H. A., Walker, C. & Schüßler, A., 2009, In : New Phytologist. 182, 2, p. 495-506

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  50. Empirical and theoretical challenges in aboveground–belowground ecology

    Van der Putten, W. H., Bardgett, R. D., de Ruiter, P. C., Hol, W. H. G., Meyer, K. M., Bezemer, T. M., Bradford, M. A., Christensen, S., Eppinga, M. B., Fukami, T., Hemerik, L., Molofsky, J., Schädler, M., Scherber, C., Strauss, S. Y., Vos, M. & Wardle, D. A., 2009, In : Oecologia. 161, 1, p. 1-14

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  51. Environmental microarray analyses of Antarctic soil microbial communities

    Yergeau, E., Schoondermark-Stolk, S. A., Brodie, E. L., Déjean, S., DeSantis, T. Z., Gonçalves, O., Piceno, Y. M., Andersen, G. L. & Kowalchuk, G. A., 2009, In : ISME Journal. 3, 3, p. 340-351

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  52. Impact of Collimonas bacteria on community composition of soil fungi

    Höppener-Ogawa, S., Leveau, J. H. J., Hundscheid, M. P. J., Van Veen, J. A. & De Boer, W., 2009, In : Environmental Microbiology. 11, 6, p. 1444-1452

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  53. Inter-specific interactions between carbon-limited soil bacteria affect behavior and gene expression

    Garbeva, P. V. & De Boer, W., 2009, In : Microbial Ecology. 58, 1, p. 36-46

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

  54. Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

    Vorob'ev, A. V., De Boer, W., Folman, L. B., Bodelier, P. L. E., Doronina, N. V., Suzina, N. E., Trotsenko, Y. A. & Dedysh, S. N., 2009, In : International Journal of Systematic and Evolutionary Microbiology. 59, p. 2538-2545

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

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