NIOO - Marine Microbiology

Research Output

2014

Dynamics and limitations of phytoplankton biomass along a gradient in Mwanza Gulf, southern Lake Victoria (Tanzania)

Cornelissen, I. J. M., Silsbe, G., Verreth, J., Van Donk, E. & Nagelkerke, L. A. J., 2014, In : Freshwater Biology. 59, 1, p. 127-141

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2013

Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics

Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S. & Van Veen, J. A., 2013, In : Global Change Biology. 19, 2, p. 621-636

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)
2012
Open Access
2 Downloads (Pure)

Cyanobacterial mats and stromatolites

Stal, L. J., 2012, Ecology of Cyanobacteria II: their diversity in space and time II. Whitton, B. A. (ed.). Springer, p. 66-125

Research output: Chapter in book/volumeChapterScientific

Did the loss of phytoplanktivorous fish contribute to algal blooms in the Mwanza Gulf of Lake Victoria?

Witte, F., Silsbe, G., Hecky, R. E., Goudswaard, P. C., Guildford, S. J., Kishe-Machumu, M. A. & Wanink, J. H., 2012, In : Hydrobiologia. 679, 1, p. 283-296

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)

Dinitrogen fixation in a unicellular chlorophyll d-containing cyanobacterium

Pfreundt, U., Stal, L. J., Voss, B. & Hess, W. R., 2012, In : ISME Journal. 6, 7, p. 1367-1377

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Effect of salinity on nitrogenase activity and composition of the active diazotrophic community in intertidal microbial mats

Severin, I., Confurius - Guns, V. & Stal, L. J., 2012, In : Archives of Microbiology. 194, 6, p. 483-491

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Jania rubens-associated bacteria: molecular identification and antimicrobial activity

Ismail-Ben Ali, A., El Bour, M., Ktari, L., Bolhuis, H., Ahmed, M., Boudabbous, A. & Stal, L. J., 2012, In : Journal of Applied Phycology. 24, 3, p. 525-534

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Technical Note: Calibration and validation of geophysical observation models

Salama, M. S., Van der Velde, R., Van der Woerd, H. J., Kromkamp, J. C., Philippart, C. J. M., Joseph, A. T., O'Neill, P. E., Lang, R. H., Gish, T., Werdell, P. J. & Su, Z., 2012, In : Biogeosciences. 9, 6, p. 2195-2201

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
242 Downloads (Pure)
2011

Analysis of bacterial and archaeal diversity in coastal microbial mats using massive parallel 16S rRNA gene tag sequencing

Bolhuis, H. & Stal, L. J., 2011, In : ISME Journal. 5, 11, p. 1701-1712

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Biopolymer

Stal, L. J., 2011, Encyclopedia of Astropedia. Berlin: Springer, p. 199-200

Research output: Chapter in book/volumeChapterPopularizing

6 Downloads (Pure)

Comparison of nutrient acquisition in exotic plant species and congeneric natives

Meisner, A., De Boer, W., Verhoeven, K. J. F., Boschker, H. T. S. & Van der Putten, W. H., 2011, In : Journal of Ecology. 99, 6, p. 1308-1315

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
1 Downloads (Pure)

Cyanobacteria, diversity and evolution of

Stal, L. J., 2011, Encyclopedia of Astropedia. Berlin: Springer, p. 397-401

Research output: Chapter in book/volumeChapterPopularizing

2 Downloads (Pure)

Cyanobacterial lactate oxidases serve as essential partners of N2-fixation and evolved to photorespiratory glycolate oxidases in plants

Hackenberg, C., Kern, R., Hüge, J., Stal, L. J., Tsuji, Y., Kopka, J., Shiraiwa, Y., Bauwe, H. & Hagemann, M., 2011, In : Plant Cell. 23, 8, p. 2978-2990

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Diazotrophic microbial community of coastal microbial mats of the southern North Sea

Bauersachs, T., Compaore, J., Severin, I., Hopmans, E. C., Schouten, S., Stal, L. J. & Sinninghe Damsté, J. S., 2011, In : Geobiology. 9, 4, p. 349-359

Research output: Contribution to journal/periodicalArticleScientificpeer-review

DTAF: an efficient probe to study cyanobacterial-plant interaction using confocal laser scanning microscopy (CLSM)

Ahmed, M., Stal, L. J. & Hasnain, S., 2011, In : Journal of Industrial Microbiology and Biotechnology. 38, 1, p. 249-255

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Ecological evaluation of an experimental beneficial use scheme for dredged sediment disposal in shallow tidal waters

Van der Wal, D., Forster, R. M., Rossi, F., Hummel, H., Ysebaert, T., Roose, F. & Herman, P. M. J., 2011, In : Marine Pollution Bulletin. 62, 1, p. 99-108

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Effect of carbonate chemistry alteration on the early embryonic development of the pacific pyster (Crassostrea gigas)

Gazeau, F. P. H., Gattuso, J. P., Greaves, M., Elderfield, H., Peene, J., Heip, C. H. R. & Middelburg, J. J., 2011, In : PLoS One. 6, 8, e23010.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
173 Downloads (Pure)

Exopolymers

Stal, L. J., 2011, Encyclopedia of Astrobiology. Berlin: Springer, p. 555-556

Research output: Chapter in book/volumeChapterPopularizing

13 Downloads (Pure)
Open Access

Low water column nitrogen fixation in the Mediterranean Sea: basin-wide experimental evidence

Agawin, N. S. R., Tovar-Sanchez, A., Stal, L. J., Alvarez, M., Agusti, S. & Duarte, C. M., 2011, In : Aquatic Microbial Ecology. 64, 2, p. 135-147

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Mariene microbiologie. Een zee van bacterien

Stal, L. J., 2011, Microcanon. Wat je beslist moet weten over microbiologie. Diemen: Veen Media, p. 17-20 Chap 5

Research output: Chapter in book/volumeChapterPopularizing

Microbial Mats

Stal, L. J. & Noffke, N., 2011, Encyclopedia of Astropedia. Berlin: Springer, p. 1042-1045

Research output: Chapter in book/volumeChapterPopularizing

1 Downloads (Pure)

Nitrogen fixation by Trichodesmium and small diazotrophs in the subtropical northeast Atlantic

Benavides, M., Agawin, N. S. R., Arístegui, J., Ferrio, P. & Stal, L. J., 2011, In : Aquatic Microbial Ecology. 65, 1, p. 43-53

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Photoacclimation in Dunaliella tertiolecta reveals a unique NPQ pattern upon exposure to irradiance

Ihnken, S., Kromkamp, J. C. & Beardall, J., 2011, In : Photosynthesis Research. 110, 2, p. 123-137

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
344 Downloads (Pure)

Shifts in coastal Antarctic marine microbial communities during and after melt water-related surface stratification

Piquet, AM-T., Bolhuis, H., Meredith, M. P. & Buma, A. G. J., 2011, In : FEMS Microbiology Ecology. 76, 3, p. 413-427

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)
2010

A global census of marine microbes

Amaral-Zettler, L., Artigas, L. F., Baross, J., Boetius, A. A., Chandramohan, D., Herndl, G., Kogure, K., Neal, P., Pedrós-Alió, C., Ramette, A., Schouten, S., Stal, L. J., Thessen, A., De Leeuw, J. W. & Sogin, M., 2010, Life in the World's Oceans: Diversity, Distribution, and Abundance. McIntyre, A. (ed.). Wiley-Blackwell, p. 223-245

Research output: Chapter in book/volumeChapterScientific

Association of non-heterocystous cyanobacteria with crop plants

Ahmed, M., Stal, L. J. & Hasnain, S., 2010, In : Plant and Soil. 336, 1-2, p. 363-375

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Changes in phytoplankton biomass in the Western Scheldt estuary during the period 1978-2006

Kromkamp, J. C. & Van Engeland, T., 2010, In : Estuaries and Coasts. 33, 2, p. 270-285

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
327 Downloads (Pure)

Composition, production, and loss of carbohydrates in subtropical shallow subtidal sandy sediments: Rapid processing and long-term retention revealed by 13C-labeling

Oakes, J. M., Eyre, B. D., Middelburg, J. J. & Boschker, H. T. S., 2010, In : Limnology and Oceanography. 55, 5, p. 2126-2138

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Composition and heterogeneity of the microbial community in a coastal microbial mat as revealed by the analysis of pigments and phospholipid-derived fatty acids

Dijkman, N. A., Boschker, H. T. S., Stal, L. J. & Kromkamp, J. C., 2010, In : Journal of Sea Research. 63, 1, p. 62-70

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Diazotrophic Microbial Mats

Severin, I. & Stal, L. J., 2010, Microbial Mats : Modern and Ancient Microorganisms in Stratified Systems. Seckbach, J. & Oren, A. (eds.). Springer, Vol. 14. p. 321-339 (Cellular Origin, Life in Extreme Habitats and Astrobiology).

Research output: Chapter in book/volumeChapterScientific

Diversity of diazotrophic microorganisms in a microbial mat

Stal, L. J. & Severin, I., 2010.

Research output: Contribution to conferencePaperScientific

Diversity of nitrogen-fixing bacteria in cyanobacterial mats

Severin, I., Acinas, S. G. & Stal, L. J., 2010, In : FEMS Microbiology Ecology. 73, 3, p. 514-525

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Ecologisch Functioneren en Diversiteit Soorten. Rapportage in het kader van het project 'Ontwikkeling Evaluatiemethodiek MONEOS' en hoofdstuk 6 van het eindrapport 'Evaluatiemethodiek systeemmonitoring Schelde-estuarium'.

Wijnhoven, S., Kromkamp, J. C., Van Ryckegem, G., Van den Bergh, E. & Speybroeck, J., 2010, Yerseke: NIOO-KNAW. (Monitor Taskforce Pubication Series)

Research output: Book/ReportReportProfessional

Een zee van bacteriën

Stal, L. J., 2010, Canon van de Microbiologie.

Research output: Chapter in book/volumeChapterPopularizing

Effect of ocean acidification on the early life stages of the blue mussel Mytilus edulis

Gazeau, F. P. H., Gattuso, J. P., Dawber, C., Pronker, A. E., Peene, F., Peene, J., Heip, C. H. R. & Middelburg, J. J., 2010, In : Biogeosciences. 7, 7, p. 2051-2060

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
480 Downloads (Pure)

Horizontal transfer of the nitrogen fixation gene cluster in the cyanobacterium Microcoleus chthonoplastes

Bolhuis, H., Severin, I., Confurius - Guns, V., Wollenzien, U. I. A. & Stal, L. J., 2010, In : ISME Journal. 4, 1, p. 121-130

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Human faecal microbiota display variable patterns of glycerol metabolism

De Weirdt, R., Possemiers, S., Vermeulen, G., Moerdijk-Poortvliet, T. C. W., Boschker, H. T. S., Verstraete, W. & Van de Wiele, T., 2010, In : FEMS Microbiology Ecology. 74, 3, p. 601-611

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)

Long term changes in phytoplankton biomass in the Western Scheldt Estuary

Kromkamp, J. C. & Van Engeland, T., 2010.

Research output: Contribution to conferencePaperScientific

Long term changes in phytoplankton biomass in the Western Scheldt estuary (the Netherlands)

Kromkamp, J. C., Van Engeland, T. & Peene, J., 2010.

Research output: Contribution to conferencePaperScientific

Microphytobenthos as a biogeomorphological force in intertidal sediment stabilization

Stal, L. J., 2010, In : Ecological Engineering. 36, 2, p. 236-245

Research output: Contribution to journal/periodicalArticleScientificpeer-review

6 Downloads (Pure)

Modelling photosynthesis-irradiance curves: effects of temperature, dissolved silica depletion and changing community assemblage on community photosynthesis

Cox, T. J. S., Soetaert, K. E. R., Vanderborght, J. P., Kromkamp, J. C. & Meire, P., 2010, In : Limnology and Oceanography Methods. 8, p. 424-440

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

NifH expression by five groups of phototrophs compared with nitrogenase activity in coastal microbial mats

Severin, I. & Stal, L. J., 2010, In : FEMS Microbiology Ecology. 73, 1, p. 55-67

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Occurrence of C35-C45 polyprenols in filamentous and unicellular cyanobacteria

Bauersachs, T., Schouten, S., Compaore, J., Stal, L. J. & Sinninghe Damsté, J. S., 2010, In : Organic Geochemistry. 41, 9, p. 867-870

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Oxygen and temperature in relation to nitrogen fixation in cyanobacteria

Compaore, J., 2010, Amsterdam: Amsterdam University Press.

Research output: PhD ThesisPhD thesis

Open Access

Oxygen and the light-dark cycle of nitrogenase activity in two unicellular cyanobacteria

Compaore, J. & Stal, L. J., 2010, In : Environmental Microbiology. 12, 1, p. 54-62

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Production of indole-3-acetic acid by the cyanobacterium Arthrospira platensis strain MMG-9

Ahmed, M., Stal, L. J. & Hasnain, S., 2010, In : Journal of Microbiology and Biotechnology. 20, 9, p. 1259-1265

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)

Seasonal succession and UV sensitivity of marine bacterioplankton at an Antarctic coastal site

Piquet, AM-T., Bolhuis, H., Davidson, A. T. & Buma, A. G. J., 2010, In : FEMS Microbiology Ecology. 73, 1, p. 68-82

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)