NIOO - Microbial Ecology (ME)

Search results

• interkingdom relationships in the soil and rhizosphere

  Suleiman, A. (Creator), Harkes, P. (Creator), van den Elsen, S. (Creator), Holterman, M. (Creator), Korthals, G. (Creator), Helder, J. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 30 Sept 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB31292

  Dataset

• SOIL MICROBIAL COMMUNITY RESISTANCE TO NPK FERTILIZATION AND RESILIANCE TO FERTILIZATION WITH DICYANDIAMIDE-TREATED SWINE SLURRY

  Suleiman, A. K. A. (Creator), Lupatini, M. (Creator) & Kuramae, E. (Creator), NCBI, 01 Oct 2015

  https://www.ncbi.nlm.nih.gov/sra/SRX1294673/

  Dataset

• Ammonia-oxidizing bacterial communities in tropical soils under N and organic amendment

  Lourenço, K. (Creator), Cassman, N. (Creator), Pijl, A. (Creator), van Veen, J. A. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB25428

  Dataset

• Draft genomes of vinasse bacteria

  Cassman, N. (Creator), Lourenço, K. (Creator), Braga do Carmo, J. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), Zenodo, 22 Feb 2019

  DOI: 10.5281/zenodo.1194340

  Dataset

• Effects of NI on amoA bacterial abundances

  Cassman, N. (Creator), Soares, J. R. (Creator), Pijl, A. (Creator), Lourenço, K. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 05 Apr 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB31114

  Dataset

• Soil microbial response to organic disturbances

  Lourenço, K. (Creator), Suleiman, A. K. A. (Creator), Pijl, A. (Creator), van Veen, J. A. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 22 Aug 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB25676

  Dataset

• Sustainability of microalgae fertilization above and belowground

  Suleiman, A. (Creator), Lourenço, K. (Creator), Clark, C. (Creator), Silva, G. H. R. (Creator), Vet, L. E. M. (Creator), Cantarella, H. (Creator), Vasconcelos Fernandes, T. (Creator) & Kuramae, E. (Creator), NCBI, 01 Sept 2020

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB32941

  Dataset

• Short-term effect of different vinasse processing on the soil microbiome

  Lourenço, K. (Creator), Costa, O. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 30 Aug 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB44846

  Dataset

• Responses of Acidobacteria Granulicella sp. WH15 to carbon stress revealed by integrated omics analyses

  Costa, O. (Creator), Zerillo, M. (Creator), Zühlke, D. (Creator), Kielak, A. (Creator), Pijl, A. (Creator), Riedel, K. (Creator) & Kuramae, E. (Creator), NCBI, 08 Aug 2019

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA559284

  Dataset

• Metagenomic Shotgun of EPS-cultivated microorganisms

  Costa, O. (Creator), De Hollander, M. (Creator), Pijl, A. (Creator), Liu, B. (Creator) & Kuramae, E. (Creator), NCBI, 13 Jun 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB24069

  Dataset

• data from: Composition, function and succession of bacterial communities in the tomato rhizosphere during continuous cropping

  Su, L. (Creator), Li, H. (Creator), Wang, J. (Creator), Gao, W. (Creator), Shu, X. (Creator), Sun, X. (Creator), Wang, K. (Creator), Duan, Y. (Creator), Liu, Y. (Creator), Kuramae, E. (Creator), Zhang, R. (Creator) & Shen, B. (Creator), Springer, 22 May 2023

  https://static-content.springer.com/esm/art%3A10.1007%2Fs00374-023-01731-7/MediaObjects/374_2023_1731_MOESM1_ESM.docx

  Dataset

• data from: Enhancing cucumber plantlet growth and rhizosphere microbial communities with chitin and gelatin biostimulants

  Costa, O. (Creator), Chang, J. (Creator), Chen, S. (Creator), van Lith, W. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 20 Oct 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB66731

  Dataset

• Bulk Soil Microbiome Raw sequence reads

  Abera Dinke, S. (Creator), Shimels, M. (Creator), Tessema, T. (Creator), Raaijmakers, J. M. (Creator) & Andreote, F. D. (Creator), NCBI, 21 May 2022

  https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA841233

  Dataset

• epiGBS2: Improvements and evaluation of highly demultiplexed, epiGBS-based RRBS

  Gawehns, F. (Creator), Postuma, M. (Creator), Van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), Van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, A. C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator) & Verhoeven, K. (Creator), NCBI, 21 Sept 2021

  https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA764918

  Dataset

• SRX10989861: RRBS individual Parus major

  Gawehns, F. (Creator), Postuma, M. (Creator), Van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), Van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, A. C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator) & Verhoeven, K. (Creator), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10989861[accn]

  Dataset

• Disentangling the genetic basis of rhizosphere microbiome assembly in tomato (metagenomics part)

  Oyserman, B. (Creator), Sarango Flores, S. W. (Creator), Griffioen, T. (Creator), Pan, X. (Creator), van der Wijk, E. (Creator), Pronk, L. (Creator), Lokhorst, W. (Creator), Nurfikari, A. (Creator), Paulson, J. N. (Creator), Movassagh, M. (Creator), Stopnisek, N. (Creator), Kupczok, A. (Creator), Cordovez da Cunha, V. (Creator), Carrion Bravo, V. (Creator), Ligterink, W. (Creator), Snoek, B. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), European Nucleotide Archive (ENA), 02 Mar 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJNA789467

  Dataset

• Hylemonella gracilis strain NS1 chromosome

  Tyc, O. (Creator), Kulkarni, P. (Creator), Ossowicki, A. (Creator), Tracanna, V. (Creator), Medema, M. H. (Creator), van Baarlen, P. (Creator), van IJcken, W. F. J. (Creator), Verhoeven, K. (Creator) & Garbeva, P. (Creator), NCBI, 2018

  https://www.ncbi.nlm.nih.gov/nuccore/CP031395

  Dataset

• data from: Pioneer Arabidopsis thaliana spans the succession gradient revealing a diverse root-associated microbiome

  Hesen, V. (Creator), Boele, Y. (Creator), Bakx-Schotman, T. (Creator), van Beersum, F. (Creator), Raaijmakers, C. (Creator), Scheres, B. (Creator), Willemsen, V. (Creator) & van der Putten, W. H. (Creator), European Nucleotide Archive (ENA), 21 Jul 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB59993

  Dataset

• data from: Effect of microplastic pollution on the gut microbiome of anecic and endogeic earthworms

  Papazlatani, C. (Creator), Garbeva, P. (Creator) & Huerta Lwanga, E. (Creator), Oxford University Press, 06 Jul 2024

  https://academic.oup.com/femsle/article/doi/10.1093/femsle/fnae040/7689755#supplementary-data

  Dataset

• Data from: Soil warming and fertilization altered rates of nitrogen transformation processes and selected for adapted ammonia-oxidizing archaea in sub-arctic grassland soil

  Daebeler, A. (Creator), Marine Data Archive, 09 Jan 2017

  http://mda.vliz.be/mda/directlink.php?fid=VLIZ_00000353_587355830e0cd

  Dataset

• Data from: Unexpected stimulation of soil methane uptake as emergent property of agricultural soils following bio-based residue application

  Ho, A. (Creator), Marine Data Archive, 01 Jul 2016

  http://mda.vliz.be/mda/directlink.php?fid=VLIZ_00000369_5776210950aa9

  Dataset

• Legacy effects of continuous chloropicrin-fumigation for 3-years on soil microbial community composition and metabolic activity

  Zhang, S. (Creator), Liu, X. (Creator), Jiang, Q. (Creator), Shen, G. (Creator) & Ding, W. (Creator), Figshare, 18 Sept 2017

  DOI: 10.6084/m9.figshare.c.3882739

  Dataset

• Data from: Phylogenetic characterization of phosphatase-expressing bacterial communities in Baltic Sea sediments[images of DGGE gels with numbered bands]

  Steenbergh, A. K. (Creator), Marine Data Archive, 10 Dec 2014

  http://mda.vliz.be/mda/directlink.php?fid=VLIZ_00000337_1418222539

  Dataset

• Data from: Manure-associated stimulation of soil-borne methanogenic activity in agricultural soils

  Ho, A. (Creator), Marine Data Archive, 25 Mar 2015

  http://mda.vliz.be/mda/directlink.php?fid=VLIZ_00000333_1427277164

  Dataset

• Data from: Neglected role of fungal community composition in explaining variation in wood decay rates.

  Van der Wal, A. (Creator), Marine Data Archive, 2017

  http://mda.vliz.be/mda/print.php?file=VLIZ_00000381_1402645949

  Dataset