NIOO - Microbial Ecology (ME)

Search results

• data from: Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes

  Oyserman, B. (Creator), Cordovez da Cunha, V. (Creator), Sarango Flores, S. W. (Creator), Nijveen, H. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), Frontiers Media SA, 12 Jan 2021

  https://www.frontiersin.org/articles/10.3389/fmicb.2020.574053/full#S10

  Dataset

• Data from: Fungal volatiles influence plant defence against aboveground and belowground herbivory

  Moisan, K. (Creator), Aragón, M. (Creator), Gort, G. (Creator), Dicke, M. (Creator), Cordovez da Cunha, V. (Creator), Raaijmakers, J. M. (Creator) & Lucas-Barbosa, D. (Creator), Dryad, 31 Jul 2020

  DOI: 10.5061/dryad.d2547d816

  Dataset

• Impact of cellulose-rich organic soil amendments on growth dynamics and pathogenicity of Rhizoctonia solani

  Clocchiatti, A. (Creator), Hannula, E. (Creator), Rizaludin, M. S. (Creator), Hundscheid, M. P. J. (Creator), Klein Gunnewiek, P. J. A. (Creator), Schilder, M. T. (Creator), Postma, J. (Creator) & de Boer, W. (Creator), Dryad, 18 Jun 2021

  DOI: 10.5061/dryad.fqz612js6

  Dataset

• Data from: Exploring the reservoir of potential fungal plant pathogens in agricultural soil

  Van Agtmaal, M. (Creator), Straathof, A. L. (Creator), Termorshuizen, A. J. (Creator), Teurlincx, S. (Creator), Hundscheid, M. P. J. (Creator), Ruyters, S. (Creator), Busschaert, P. (Creator), Lievens, B. (Creator) & de Boer, W. (Creator), Marine Data Archive, 01 Nov 2017

  http://mda.vliz.be/mda/directlink.php?fid=VLIZ_00000444_59d74b98c5ac3

  Dataset

• The hidden potential of saprotrophic fungi in arable soil: Patterns of short-term stimulation by organic amendments

  Clocchiatti, A. (Creator), Hannula, E. (Creator), Van den Berg, M. (Creator), Korthals, G. (Creator) & de Boer, W. (Creator), Dryad, 21 May 2021

  DOI: 10.5061/dryad.6djh9w11d

  Dataset

• Modeling multipartite virus evolution: the genome formula facilitates rapid adaptation to heterogeneous environments

  Zwart, M. (Creator) & Elena, S. F. (Creator), Dryad, 18 Mar 2020

  DOI: 10.5061/dryad.18931zcsw

  Dataset

• data from: Steering microbiomes by organic amendments towards climate-smart agricultural soils

  Brenzinger, K. (Creator), Costa, O. (Creator), Ho, A. (Creator), Koorneef, G. (Creator), Robroek, B. J. M. (Creator), Molenaar, D. (Creator), Korthals, G. (Creator) & Bodelier, P. (Creator), European Nucleotide Archive (ENA), 05 Jan 2022

  http://www.ebi.ac.uk/ena/data/view/PRJEB43590

  Dataset

• Liquid chromatography measurement obtained from the chitin extracts of insect exuviae

  Nurfikari, A. (Creator) & de Boer, W. (Creator), Dryad, 21 Dec 2021

  DOI: 10.5061/dryad.tb2rbp026

  Dataset

• Riparian wetland methanotrophs

  Costa, O. (Creator), Meima-Franke, M. (Creator) & Bodelier, P. (Creator), NCBI, 06 Nov 2020

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA674997

  Dataset

• data from: Utilizing woody materials for fungal-based management of soil nitrogen pools

  Clocchiatti, A. (Creator), Hannula, E. (Creator), Hundscheid, M. P. J. (Creator), Klein Gunnewiek, P. J. A. (Creator) & de Boer, W. (Creator), European Nucleotide Archive (ENA), 01 Jun 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB46599

  Dataset

• Hylemonella gracilis strain NS1 chromosome

  Tyc, O. (Creator), Kulkarni, P. (Creator), Ossowicki, A. (Creator), Tracanna, V. (Creator), Medema, M. H. (Creator), van Baarlen, P. (Creator), van IJcken, W. F. J. (Creator), Verhoeven, K. (Creator) & Garbeva, P. (Creator), NCBI, 2018

  https://www.ncbi.nlm.nih.gov/nuccore/CP031395

  Dataset

• Hylemonella gracilis strain:NS1 | isolate:NS1 Genome sequencing

  Tyc, O. (Creator), Kulkarni, P. (Creator), Ossowicki, A. (Creator), Tracanna, V. (Creator), Medema, M. H. (Creator), van Baarlen, P. (Creator), van IJcken, W. F. J. (Creator), Verhoeven, K. (Creator) & Garbeva, P. (Creator), NCBI, 06 May 2019

  https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA483535

  Dataset

• Autographa californica multiple nucleopolyhedrovirus bacmid Raw sequence reads

  Boezen, D. (Creator) & Zwart, M. (Creator), European Nucleotide Archive (ENA), 22 Jan 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJNA798700

  Dataset

• 16S data from: Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

  Mendes, L. W. (Creator), Raaijmakers, J. M. (Creator), De Hollander, M. (Creator), Sepo, E. (Creator), Gomez Exposito, R. (Creator), Chiorato, A. F. (Creator), Mendes, R. (Creator), Tsai, S. M. (Creator) & Carrion Bravo, V. (Creator), NCBI, 22 Nov 2022

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA904225

  Dataset

• metatranscriptome data from: Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

  Mendes, L. W. (Creator), Raaijmakers, J. M. (Creator), De Hollander, M. (Creator), Sepo, E. (Creator), Gomez Exposito, R. (Creator), Chiorato, A. F. (Creator), Mendes, R. (Creator), Tsai, S. M. (Creator) & Carrion Bravo, V. (Creator), NCBI, 22 Nov 2022

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA904281

  Dataset

• metagenome data from: Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome

  Mendes, L. W. (Creator), Raaijmakers, J. M. (Creator), De Hollander, M. (Creator), Sepo, E. (Creator), Gomez Exposito, R. (Creator), Chiorato, A. F. (Creator), Mendes, R. (Creator), Tsai, S. M. (Creator) & Carrion Bravo, V. (Creator), NCBI, 22 Nov 2022

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA904562

  Dataset

• Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

  Oyserman, B. (Creator), Sarango Flores, S. W. (Creator), Griffioen, T. (Creator), Pan, X. (Creator), van der Wijk, E. (Creator), Pronk, L. (Creator), Lokhorst, W. (Creator), Nurfikari, A. (Creator), Paulson, J. N. (Creator), Movassagh, M. (Creator), Stopnisek, N. (Creator), Kupczok, A. (Creator), Cordovez da Cunha, V. (Creator), Carrion Bravo, V. (Creator), Ligterink, W. (Creator), Snoek, B. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), European Nucleotide Archive (ENA), 02 Mar 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJNA787039

  Dataset

• Drought legacy effects on composition of soil fungal and prokaryote communities

  Meisner, A. (Creator), Samuel, J. (Creator), Snoek, B. (Creator), ten Hooven, F. (Creator) & van der Putten, W. H. (Creator), European Nucleotide Archive (ENA), 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB23318

  Dataset

• Geranium microbiome

  Wilschut, R. (Creator), van der Putten, W. H. (Creator), Garbeva, P. (Creator), Harkes, P. (Creator), Konings, W. (Creator), Kulkarni, P. (Creator), Martens, H. (Creator) & Geisen, S. (Creator), European Nucleotide Archive (ENA), 25 Nov 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB29769

  Dataset

• data from: Effect of microplastic pollution on the gut microbiome of anecic and endogeic earthworms

  Papazlatani, C. (Creator), Garbeva, P. (Creator) & Huerta Lwanga, E. (Creator), Oxford University Press, 06 Jul 2024

  https://academic.oup.com/femsle/article/doi/10.1093/femsle/fnae040/7689755#supplementary-data

  Dataset

• Data from: Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition.

  Ho, A. (Creator), Ijaz, U. Z. (Creator), Janssens, T. (Creator), Ruijs, R. (Creator), Kim, S. Y. (Creator), de Boer, W. (Creator), Termorshuizen, A. J. (Creator), van der Putten, W. H. (Creator) & Bodelier, P. (Creator), Marine Data Archive, 17 Jan 2020

  http://mda.vliz.be/directlink.php?fid=VLIZ_00000369_5e216dd50583c

  Dataset

• Dilution manipulation

  Yan, Y. (Creator), Kuramae, E. (Creator), De Hollander, M. (Creator), Klinkhamer, P. G. L. (Creator) & van Veen, J. A. (Creator), European Nucleotide Archive (ENA), 08 Sept 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12988

  Dataset

• LONG-TERM APPLICATION OF LIME AND GYPSUM ON TROPICAL NO-TILLAGE SYSTEM CHANGES SOIL MICROBIAL COMMUNITIES AND NITROGEN-CYCLE

  Bossolani, J. W. (Creator), Crusciol, C. A. C. (Creator), Fernandes Alves Leite, M. (Creator), Merloti, L. F. (Creator), Moretti de Souza, L. (Creator), Pascoaloto, I. M. (Creator) & Kuramae, E. (Creator), NCBI, 23 Apr 2021

  https://www.ncbi.nlm.nih.gov/bioproject/PRJEB40513

  Dataset

• Organic nitrogen rearranges both structure and activity of the soilborne microbial seedbank

  Leite, M. F. A. (Creator), Pan, Y. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 28 Feb 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB19236

  Dataset

• 16S rRNA from sugarcane soil after different management practices

  Pitombo, L. (Creator), De Hollander, M. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 26 Mar 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB8973

  Dataset