NIOO - Microbial Ecology (ME)

Search results

• data from: Evaluation of sequencing and PCR-based methods for the quantification of the viral genome formula

  Boezen, D. (Creator), Johnson, M. (Creator), Grum-Grzimaylo, A. (Creator), van der Vlugt, R. A. A. (Creator) & Zwart, M. (Creator), NCBI, 25 Jan 2023

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA927308

  Dataset

• Data from: Genetic, phenotypic and metabolic diversity of yeasts from wheat flag leaves

  Gouka, L. (Creator), Vogels, C. (Creator), Hestbjerg Hansen, L. (Creator), Raaijmakers, J. M. (Creator) & Cordovez da Cunha, V. (Creator), European Nucleotide Archive (ENA), 17 Jun 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB51687

  Dataset

• Data from: Soil pathogen-aphid interactions under differences in soil organic matter and mineral fertilizer

  van Gils, S. (Creator), Biere, A. (Creator), Van Agtmaal, M. (Creator), Tyc, O. (Creator), Kos, M. (Creator) & van der Putten, W. H. (Creator), Dryad, 19 Aug 2017

  DOI: 10.5061/dryad.7tc36

  Dataset

• Disentangling the genetic basis of rhizosphere microbiome assembly in tomato (metagenomics part)

  Oyserman, B. (Creator), Sarango Flores, S. W. (Creator), Griffioen, T. (Creator), Pan, X. (Creator), van der Wijk, E. (Creator), Pronk, L. (Creator), Lokhorst, W. (Creator), Nurfikari, A. (Creator), Paulson, J. N. (Creator), Movassagh, M. (Creator), Stopnisek, N. (Creator), Kupczok, A. (Creator), Cordovez da Cunha, V. (Creator), Carrion Bravo, V. (Creator), Ligterink, W. (Creator), Snoek, B. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), European Nucleotide Archive (ENA), 02 Mar 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJNA789467

  Dataset

• Data from: Unexpected role of canonical aerobic methanotrophs in upland agricultural soils.

  Ho, A. (Creator), Lee, H. J. (Creator), Reumer, M. (Creator), Meima-Franke, M. (Creator), Raaijmakers, C. (Creator), Zweers, H. (Creator), de Boer, W. (Creator), van der Putten, W. H. (Creator) & Bodelier, P. (Creator), Marine Data Archive, 06 Jan 2021

  https://mda.vliz.be/directlink.php?fid=VLIZ_00000369_5ff5b87fd699f786417759

  Dataset

• 18S rRNA sequencing Dark Earth

  Reis Lucheta, A. (Creator), Souza Cannavan, F. S. (Creator), Roesch, L. (Creator), Tsai, S. M. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 14 Nov 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB10851

  Dataset

• Data from: Soil microbiome responses to the short-term effects of Amazonian deforestation

  Navarrete, A. A. (Creator), Tsai, S. M. (Creator), Mendes, L. W. (Creator), Faust, K. (Creator), De Hollander, M. (Creator), Cassman, N. (Creator), van Veen, J. A. (Creator) & Kuramae, E. (Creator), Dryad, 24 Mar 2015

  DOI: 10.5061/dryad.071p0

  Dataset

• Non corroding sheet piles in the soil.

  Kip, D. J. (Creator), Leite, M. F. A. (Creator), De Hollander, M. (Creator), Kuramae, E. (Creator) & van Veen, J. A. (Creator), European Nucleotide Archive (ENA), 05 Nov 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB9787

  Dataset

• The effects of long-term experiment on fungal and protists community

  Lupatini, M. (Creator), Korthals, G. W. (Creator), Roesch, L. F. W. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 29 Apr 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB10908

  Dataset

• Rhizomicrobiome structure of sorghum genotypes over plant growth stages in different soils

  Schlemper, T. R. (Creator), Leite, M. F. A. (Creator), Lucheta, A. (Creator), Shimels, M. (Creator), Bouwmeester, H. J. (Creator), van Veen, J. A. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB21895

  Dataset

• Differential abundance affect fungal communities structure and composition in Amazonian Dark Earth and black carbon particles

  Lucheta, A. (Creator), Souza Cannavan, F. S. (Creator), Tsai, S. M. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 2016

  https://www.ebi.ac.uk/ena/data/view/PRJEB12675

  Dataset

• soil metagenome

  Dimitrov, M. (Creator), Veraart, A. J. (Creator), De Hollander, M. (Creator), Smidt, H. (Creator), van Veen, J. A. (Creator) & Kuramae, E. (Creator), NCBI, 21 Nov 2016

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA354227

  Dataset

• Recovery of soil fungal structure over one year after multiple pulse disturbances with organic fertilization

  Lourenço, K. (Creator), Suleiman, A. (Creator), Pijl, A. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 29 Sept 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB30929

  Dataset

• Wood characteristics determine bacterial assembly

  Kuramae, E. (Creator), Fernandes Alves Leite, M. (Creator), Suleiman, A. (Creator), Gough, C. M. (Creator), Castillo, B. (Creator), Faller, L. (Creator), Franklin, R. (Creator) & Syring, J. (Creator), European Nucleotide Archive (ENA), 06 Jun 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB26754

  Dataset

• Rhizomicrobiome structure of sorghum genotypes over plant growth stages in different soils

  Schlemper, T. R. (Creator), van Veen, J. A. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 30 Aug 2017

  https://www.ebi.ac.uk/ena/data/view/PRJEB21895

  Dataset

• Acidobacterial EPS degraders uraveled by stable isotope probing - Shotgun Metagenomics sequencing

  Costa, O. (Creator), De Hollander, M. (Creator), Pijl, A. (Creator), Liu, B. (Creator) & Kuramae, E. (Creator), NCBI, 18 Jun 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB31257

  Dataset

• Soil microbial response to organic disturbances

  Lourenço, K. (Creator), Suleiman, A. (Creator), Pijl, A. (Creator), Cantarella, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 22 Aug 2018

  https://www.ebi.ac.uk/ena/data/view/PRJEB25676

  Dataset

• PRJEB48727: Eucalypt species genotype drives rhizosphere bacterial and fungal community assembly but soil P availability rearranges the microbiome

  Bulgarelli, R. G. (Creator), Fernandes Alves Leite, M. (Creator), De Hollander, M. (Creator), Mazzafera, P. (Creator), Andrade, S. A. L. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 24 Nov 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB48727

  Dataset

• data from: Soil substrate source drives the microbes involved in the degradation of gelatin used as a biostimulant

  Costa, O. (Creator), Pijl, A. (Creator), Houbraken, J. (Creator), van Lith, W. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 05 Oct 2023

  https://www.ebi.ac.uk/ena/browser/view/PRJEB55048

  Dataset

• Here is the sequence that are generated from cross dilution design study. All samples were sequenced by 16S rRNA gene sequence.

  Yan, Y. (Creator), Klinkhamer, P. G. L. (Creator), van Veen, H. (Creator) & Kuramae, E. (Creator), European Nucleotide Archive (ENA), 27 Feb 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB31454

  Dataset

• data from: Microbial community dynamics during decomposition of insect exuviae and frass in soil

  Nurfikari, A. (Creator), Fernandes Alves Leite, M. (Creator), Kuramae, E. (Creator) & de Boer, W. (Creator), European Nucleotide Archive (ENA), 19 Jul 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB54065

  Dataset

• Parus major Genome sequencing and assembly

  Laine, V. (Creator), Gossmann, T. I. (Creator), Schachtschneider, K. M. (Creator), Garroway, C. J. (Creator), Madsen, O. (Creator), Verhoeven, K. (Creator), de Jager, V. C. L. (Creator), Megens, H. (Creator), Warren, W. C. (Creator), Minx, P. (Creator), Crooijmans, R. P. M. A. (Creator), Corcoran, P. (Creator), Sheldon, B. C. (Creator), Slate, J. (Creator), Zeng, K. (Creator), van Oers, K. (Creator), Visser, M. E. (Creator) & Groenen, M. A. M. (Creator), NCBI, 2016

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA208335

  Dataset

• epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

  Gawehns, F. (Creator), Postuma, M. (Creator), Van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), Van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, A. C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator) & Verhoeven, K. (Creator), Zenodo, 31 Dec 2021

  DOI: 10.5281/zenodo.5519370

  Dataset

• SRX10989862: RRBS individual Parus major

  Gawehns, F. (Creator), Postuma, M. (Creator), Van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), Van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, A. C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator) & Verhoeven, K. (Creator), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10989862[accn]

  Dataset