Westerdijk Fungal Biodiversity Institute - Collection

Research output

Research output per year 2017 2017 2019 2020 2021 2023

• 52 Article
• 2 Book/Film/Article review
• 1 Book
• 1 Chapter
• 3 More
  • 1 Contribution to conference proceedings
  • 1 Abstract
  • 1 Poster

Research output per year

Research output per year

Search results

• 2023

  Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex

  de Jong, A. W., Al-Obaid, K., Mohd Tap, R., Gerrits van den Ende, B., Groenewald, M., Joseph, L., Ahmad, S. & Hagen, F., 03 Feb 2023, In: Medical Mycology. 61, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida 100%
  • Yeasts 78%
  • Invasive Fungal Infections 63%
  • Molecular Pathology 55%
  • Names 46%

• Comparing genomic variant identification protocols for Candida auris

  Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d'Enfert, C., Engelthaler, D. M., Eyre, D. W., Fisher, M. C., & 6 othersHagen, F., Meyer, W., Singh, G., Alastruey-Izquierdo, A., Litvintseva, A. P. & Cuomo, C. A., 13 Apr 2023, In: Microbial genomics. 9, 4

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida 100%
  • Single Nucleotide Polymorphism 81%
  • Practice Guidelines 36%
  • Disease Outbreaks 34%
  • Genome 26%
• 2022

  Dnabarcoder: An open‐source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification

  Vu, D., Nilsson, R. H. & Verkley, G. J. M., 20 Jun 2022, In: Molecular Ecology Resources.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Fatal secondary fungemia due to Trichosporon asahii onychomycosis in a diabetic patient

  Taj-Aldeen, S., Francisco, E., Al Maslamani, M., Theelen, B., Vu, D., Boekhout, T. & Hagen, F., 20 Sept 2022, p. 295-295.

  Research output: Contribution to conference › Poster › Scientific

  Open Access

• Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome

  van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J. & van den Wijngaard, R. M., 30 Mar 2022, In: Scientific Reports. 12, 1, p. 5391

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Irritable Bowel Syndrome 100%
  • Candida albicans 88%
  • Genetic Variation 84%
  • Candida albicans ECE1 protein 31%
  • Fungi 26%

• Isolation and characterization of bioethanol producing wild yeasts from bio-wastes and co-products of sugar factories

  Hawaz, E., Tafesse, M., Tesfaye, A., Beyene, D., Kiros, S., Kebede, G., Boekhout, T., Theelen, B., Groenewald, M., Degefe, A., Degu, S., Admas, A. & Muleta, D., 2022, In: Annals of Microbiology. 72, 1

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • sugar 100%
  • yeast 99%
  • product 48%
  • screening 43%
  • substrate 34%

• Isolation and characterization of Vibrio owensii from Palk Bay and its infection study against post larvae of Litopenaeus vannamei

  Thillaichidambaram, M., Narayanan, K., Selvaraj, S., Sundararaju, S., Chockalingam Muthiah, R. & Figge, M., Nov 2022, In: Microbial Pathogenesis. 172, 105751, 105751.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Bays 100%
  • Vibrio 99%
  • Larva 81%
  • Virulence 67%
  • Chitinases 37%
• 2021

  A genome-scale phylogeny of the kingdom Fungi

  Li, Y., Steenwyk, J. L., Chang, Y., Wang, Y., James, T. Y., Stajich, J. E., Spatafora, J. W., Groenewald, M., Dunn, C. W., Hittinger, C. T., Shen, X-X. & Rokas, A., 26 Apr 2021, In: Current Biology. 31, 8, p. 1653-1665.e5

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Fungi (Kingdom) 100%
  • Phylogeny 73%
  • Fungi 55%
  • Filtration 53%
  • Genome 41%

• Author Correction: Fungal taxonomy and sequence-based nomenclature

  Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H. R., & 8 othersÖpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N. & Schoch, C. L., 27 May 2021, In: Nature Microbiology.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Draft Genome Sequences of Two Cadophora Strains Isolated from Water and a Nonalcoholic Beverage Ingredient Auteurs

  Stefanovic, E., Scully, C., Roader, J., Murphy, F., Houbraken, J. & Vu, D., 01 Jul 2021, In: Genome Announcements. 10, 26

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Beverages 100%
  • Soil 93%
  • Food 60%
  • Genome 58%
  • Water 57%

• Fungal Planet description sheets: 1182–1283

  Crous, P. W., Cowan, D. A., Maggs‐Kölling, G., Yilmaz, N., Thangavel, R., Wingfield, M. J., Noordeloos, M. E., Dima, B., Brandrud, T. E., Jansen, G. M., Morozova, O. V., Vila, J., Shivas, R. G., Tan, Y. P., Bishop‐Hurley, S., Lacey, E., Marney, T. S., Larsson, E., Le Floch, G., Lombard, L., & 126 othersNodet, P., Hubka, V., Alvarado, P., Berraf‐Tebbal, A., Reyes, J. D., Delgado, G., Eichmeier, A., Jordal, J. B., Kachalkin, A. V., Kubátová, A., Maciá‐Vicente, J. G., Malysheva, E. F., Papp, V., Rajeshkumar, K. C., Sharma, A., Spetik, M., Szabóová, D., Tomashevskaya, M. A., Abad, J. A., Abad, Z. G., Alexandrova, A. V., Anand, G., Arenas, F., Ashtekar, N., Balashov, S., Bañares, Á., Baroncelli, R., Bera, I., Biketova, A. Y., Blomquist, C. L., Boekhout, T., Boertmann, D., Bulyonkova, T. M., Burgess, T. I., Carnegie, A. J., Cobo‐Diaz, J. F., Corriol, G., Cunnington, J. H., da Cruz, M. O., Damm, U., Davoodian, N., de A. Santiago, A. L. C. M., Dearnaley, J., de Freitas, L. W. S., Dhileepan, K., Dimitrov, R., Di Piazza, S., Fatima, S., Fuljer, F., Galera, H., Ghosh, A., Giraldo, A., Glushakova, A. M., Gorczak, M., Gouliamova, D. E., Gramaje, D., Groenewald, M., Gunsch, C. K., Gutiérrez, A., Holdom, D., Houbraken, J., Ismailov, A. B., Istel, Ł., Iturriaga, T., Jeppson, M., Jurjević, Ž., Kalinina, L. B., Kapitonov, V. I., Kautmanova, I., Khalid, A. N., Kiran, M., Kiss, L., Kovács, Á., Kurose, D., Kusan, I., Lad, S., Læssøe, T., Lee, H. B., Luangsa‐ard, J. J., Lynch, M., Mahamedi, A. E., Malysheva, V. F., Mateos, A., Matočec, N., Mešić, A., Miller, A. N., Mongkolsamrit, S., Moreno, G., Morte, A., Mostowfizadeh‐Ghalamfarsa, R., Naseer, A., Navarro‐Ródenas, A., Nguyen, T. T. T., Noisripoom, W., Ntandu, J. E., Nuytinck, J., Ostrý, V., Pankratov, T. A., Pawłowska, J., Pecenka, J., Pham, T. H. G., Polhorský, A., Posta, A., Raudabaugh, D. B., Reschke, K., Rodríguez, A., Romero, M., Rooney‐Latham, S., Roux, J., Sandoval‐Denis, M., Smith, M. T., Steinrucken, T. V., Svetasheva, T. Y., Tkalčec, Z., van der Linde, E. J., v.d. Vegte, M., Vauras, J., Verbeken, A., Visagie, C. M., Vitelli, J. S., Volobuev, S. V., Weill, A., Wrzosek, M., Zmitrovich, I. V., Zvyagina, E. A. & Groenewald, J. Z., Jun 2021, In: Persoonia. 46, p. 313-528 216 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • planet 100%
  • Entoloma 67%
  • leaves 49%
  • soil 41%
  • leaf spot 34%

• Fungal Planet description sheets: 1284-1382

  Crous, P. W., Osieck, E. R., Jurjević, Ž., Boers, J., van Iperen, A. L., Starink-Willemse, M., Dima, B., Balashov, S., Bulgakov, T. S., Johnston, P. R., Morozova, O. V., Pinruan, U., Sommai, S., Alvarado, P., Decock, C. A., Lebel, T., McMullan-Fisher, S., Moreno, G., Shivas, R. G., Zhao, L., & 161 othersAbdollahzadeh, J., Abrinbana, M., Ageev, D. V., Akhmetova, G., Alexandrova, A. V., Altés, A., Amaral, A. G. G., Angelini, C., Antonín, V., Arenas, F., Asselman, P., Badali, F., Baghela, A., Bañares, A., Barreto, R. W., Baseia, I. G., Bellanger, J-M., Berraf-Tebbal, A., Biketova, A. Y., Bukharova, N. V., Burgess, T. I., Cabero, J., Câmara, M. P. S., Cano-Lira, J. F., Ceryngier, P., and Chávez, R., Cowan, D. A., de Lima, A. F., Oliveira, R. L., Denman, S., Dang, Q. N., Dovana, F., Duarte, I. G., Eichmeier, A., Erhard, A., Esteve-Raventós, F., Fellin, A., Ferisin, G., Ferreira, R. J., Ferrer, A., Finy, P., Gaya, E., Geering, A. D. W., Gil-Durán, C., Glässnerová, K., Glushakova, A. M., Gramaje, D., Guard, F. E., Guarnizo, A. L., Haelewaters, D., Halling, R. E., Hill, R., Hirooka, Y., Hubka, V., Iliushin, V. A., Ivanova, D. D., Ivanushkina, N. E., Jangsantear, P., Justo, A., Kachalkin, A. V., Kato, S., Khamsuntorn, P., Kirtsideli, I. Y., Knapp, D. G., Kochkina, G. A., Koukol, O., Kovács, G. M., Kruse, J., Kumar, T. K. A., Kušan, I., Læssøe, T., Larsson, E., Lebeuf, R., Levicán, G., Loizides, M., Marinho, P., Luangsa-ard, J. J., Lukina, E. G., Magaña-Dueñas, V., Maggs-Kölling, G., Malysheva, E. F., Malysheva, V. F., Martín, B., Martín, M. P., Matočec, N., McTaggart, A. R., Mehrabi-Koushki, M., Mešić, A., Miller, A. N., Mironova, P., Moreau, P-A., Morte, A., Müller, K., Nagy, L. G., Nanu, S., Navarro-Ródenas, A., Nel, W. J., Nguyen, T. H., Nóbrega, T. F., Noordeloos, M. E., Olariaga, I., Overton, B. E., Ozerskaya, A. M., Palani, P., Pancorbo, F., Papp, V., Pawłowska, J., Pham, T. Q., Phosri, C., Popov, E. S., Portugal, A., Pošta, A., Reschke, K., Reul, M., Ricci, G. M., Rodríguez, A., Romanowski, J., Ruchikachorn, N., Saar, I., Safi, A., Sakolrak, B., Salzmann, F., Sandoval-Denis, M., Sangwichein, E., Sanhueza, L., Sato, T., Sastoque, A., Senn-Irlet, B., Shibata, A., Siepe, K., Somrithipol, S., Spetik, M., Sridhar, P., Stchigel, A. M., Stuskova, K., Suwannasai, N., Tan, Y. P., Thangavel, R., Tiago, I., Tiwari, S., Tkalčec, Z., Tomashevskaya, M. A., Tonegawa, C., Tran, H. X., Tran, N. T., Trovão, J., Trubitsyn, V. E., Van Wyk, J., Vieira, W. A. S., Vila, J., Visagie, C. M., Vizzini, A., Volobuev, S. V., Vu, D. T., Wangsawat, N., Yaguchi, T., Ercole, E., Ferreira, B. W., de Souza, A. P., Vieira, B. S. & Groenewald, J. Z., 31 Dec 2021, In: Persoonia. 47, p. 178-374 197 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • planet 100%
  • Entoloma 50%
  • leaves 49%
  • branches 41%
  • air 40%

• Fusarium: more than a node or a foot-shaped basal cell

  Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., & 107 othersFrisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P. M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Amor, A. B. H., Bezerra, J. D. P., Boekhout, T., Câmara, M. P. S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., Vries, R. P. D., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S. N., Marin-Felix, Y., Kemkuignou, B. M., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J. L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C. S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W. J., Tiago, P. V., Váczy, K. Z., Wiele, N. V. D., Merwe, N. A. V. D., Verkley, G. J. M., Vieira, W. A. S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L. & Thines, M., Apr 2021, In: Studies in Mycology. 98, 184 p., 100116.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fusarium 100%
  • Foot 64%
  • Nectriaceae 51%
  • Gibberella 33%
  • cells 24%

• Hanseniaspora smithiae sp. nov., a novel apiculate yeast species from Patagonian Forests that lacks the typical genomic domestication signatures for fermentative environments

  Cadez, N., Bellora, N., Ulloa, R., Tome, M., Petkovic, H., Groenewald, M., Hittinger, C. T. & Libkind, D., 21 Jul 2021, In: Frontiers in Microbiology. 12, 11 p., 679894.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Hanseniaspora 100%
  • Domestication 81%
  • Forests 61%
  • Yeasts 41%
  • Genes 17%

• Intraspecific nucleotide divergence in Saccharomycodes ludwigii, and proposal of Saccharomycodes pseudoludwigii sp. nov, a new apiculate yeast isolated from China

  Wang, M-M., Groenewald, M., Wu, F., Guo, Y-T., Wang, Q-M. & Boekhout, T., May 2021, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 114, 5, p. 553-559

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Peptide Elongation Factor 1 100%
  • 5.8S Ribosomal RNA 64%
  • ribosomal RNA 26S 59%
  • Plant Bark 54%
  • China 53%

• Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

  de Jong, A. W., Francisco, E. C., de Almeida, J. N., Brandão, I. B., Pereira, F. M., Dias, P. H. P., de Miranda Costa, M. M., de Souza Jordão, R. T., Vu, D., Colombo, A. L. & Hagen, F., 20 Oct 2021, In: Mycopathologia.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Nanopore Sequencing 100%
  • nanopores 89%
  • Candida 64%
  • Brazil 53%
  • Genome 40%

• Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes

  Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., Liu, X., & 16 othersMaier, T., Meyer, W., Péter, G., Piątek, M., Robert, V., Rosa, C. A., Sampaio, J. P., Sipiczki, M., Stadler, M., Sugita, T., Sugiyama, J., Takagi, H., Takashima, M., Turchetti, B., Wang, Q-M. & Boekhout, T., 13 Jul 2021, In: IMA Fungus. 12, 1, p. 18

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • yeast 100%
  • Names 96%
  • Fungi 91%
  • fungus 88%
  • Yeasts 82%

• Phaffia brasiliana sp. nov., a yeast species isolated from soil in a Cerrado-Atlantic Rain Forest ecotone site in Brazil

  Oliveira Santos, A. R., Aires, A., Pontes, A., Silva, M., Brito, P. H., Groenewald, M., Melo, C. G. S., Lachance, M-A., Sampaio, J. P. & Rosa, C. A., 02 Nov 2021, In: International Journal of Systematic and Evolutionary Microbiology. 71, 11, 005080.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Rainforest 100%
  • cerrado soils 97%
  • cerrado 81%
  • ecotones 80%
  • rain forest 75%

• The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks

  Boekhout, T., Aime, M. C., Begerow, D., Gabaldón, T., Heitman, J., Kemler, M., Khayhan, K., Lachance, M-A., Louis, E. J., Sun, S., Vu, D. & Yurkov, A., 2021, In: Fungal Diversity. 109, 1, p. 27-55 29 p.

  Research output: Contribution to journal/periodical › Book/Film/Article review › Scientific

  Open Access

  • species concept 100%
  • phenotype 72%
  • yeast 65%
  • genome 62%
  • yeasts 44%

• Trends in yeast diversity discovery

  Boekhout, T., Amend, A. S., El Baidouri, F., Gabaldon, T., Geml, J., Mittelbach, M., Robert, V., Tan, C. S., Turchetti, B., Vu, D., Wang, Q-M. & Yurkov, A., 03 Dec 2021, (E-pub ahead of print) In: Fungal Diversity.

  Research output: Contribution to journal/periodical › Book/Film/Article review › Scientific

  Open Access

• Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation

  Van Poucke, K., Haegeman, A., Goedefroit, T., Focquet, F., Leus, L., Jung, M. H., Nave, C., Redondo, M. A., Husson, C., Kostov, K., Lyubenova, A., Christova, P., Chandelier, A., Slavov, S., de Cock, A., Bonants, P., Werres, S., Palau, J. O., Marçais, B., Jung, T., & 3 othersStenlid, J., Ruttink, T. & Heungens, K., 01 Dec 2021, In: IMA Fungus. 12, 1

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Phytophthora 100%
  • Genome Size 79%
  • Phylogeny 66%
  • genome 52%
  • hybrid species 45%

• Virulence related traits in yeast species associated with food; Debaryomyces hansenii, Kluyveromyces marxianus, and Wickerhamomyces anomalus

  Perez-Traves, L., de Llanos, R., Flockhart, A., Garcia-Domingo, L., Groenewald, M., Perez-Torrado, R. & Querol, A., Jun 2021, In: FOOD CONTROL. 124, 107901.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Kluyveromyces 100%
  • Wickerhamomyces anomalus 95%
  • Debaryomyces hansenii 93%
  • Kluyveromyces marxianus 88%
  • Virulence 58%
• 2020

  Comparative genomic analysis of capsule-producing black yeasts Exophiala dermatitidis and Exophiala spinifera, potential agents of disseminated mycoses

  Song, Y., Menezes da Silva, N., Almir Weiss, V., Vu, D., F Moreno, L. & de Hoog, S., 08 Apr 2020, In: Frontiers in Microbiology. 11

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Exophiala 100%
  • Mycoses 61%
  • Genomics 61%
  • Capsules 54%
  • Virulence 52%

• Convolutional neural networks improve fungal classification

  Vu, D., Groenewald, M. & Verkley, G. J. M., 28 Jul 2020, In: Scientific Reports. 10

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Datasets 100%
  • Metagenomics 62%
  • Machine Learning 57%
  • Deep Learning 34%
  • Big Data 34%

• Data Resources: Role and Services of Culture Collections

  Ryan, M., Verkley, G. J. M. & Robert, V., 2020, Trends in Systematics of Bacteria and Fungi. Bridge, P., Smith, D. & Stackebrandt, E. (eds.). CABI Publisher, p. 83-92 10 p.

  Research output: Chapter in book/volume › Chapter › Scientific › peer-review

• Diversity and phylogeny of basidiomycetous yeasts from plant leaves and soil: Proposal of two new orders, three new families, eight new genera and one hundred and seven new species

  Li, A-H., Yuan, F-X., Groenewald, M., Bensch, K., Yurkov, A. M., Li, K., Han, P-J., Guo, L-D., Aime, M. C., Sampaio, J. P., Jindamorakot, S., Turchetti, B., Inacio, J., Fungsin, B., Wang, Q-M. & Bai, F-Y., Jun 2020, In: Studies in Mycology. 96, p. 17 - 140

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Plant Leaves 100%
  • new order 98%
  • Phylogeny 79%
  • new family 78%
  • Soil 71%

• Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota

  Shen, X-X., Steenwyk, J. L., LaBella, A. L., Opulente, D. A., Zhou, X., Kominek, J., Li, Y., Groenewald, M., Hittinger, C. T. & Rokas, A., Nov 2020, In: Science advances. 6, 45, 13 p., eabd0079.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Ascomycota 100%
  • Phylogeny 79%
  • Genome 45%
  • Fungi 19%
  • Molecular Evolution 14%

• Hyphopichia lachancei, f.a., sp. nov., a yeast species from diverse origins

  Brysch-Herzberg, M., Groenewald, M., Dlauchy, D., Seidel, M. & Péter, G., Jun 2020, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 113, 6, p. 773-778 6 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Cellobiose 100%
  • Digitalis 83%
  • Hungary 81%
  • Soil 70%
  • South Africa 68%

• New ECCO model documents for Material Deposit and Transfer Agreements in compliance with the Nagoya Protocol.

  Verkley, G. J. M., Perrone, G., Pina, M., Hartmann Scholz, A., Overmann, J., Zuzuarregui, A., Perugini, I., Turchetti, B., Hendrickx, M., Stacey, G., Law, S., Russell, J., Smith, D. & Lima, N., Mar 2020, In: FEMS Microbiology Letters. 367, 5

  Research output: Contribution to journal/periodical › Article › Professional

  Open Access

• Suhomyces drosophilae sp. nov., isolated from Drosophila flies feeding on a stinkhorn mushroom

  Jadhav, R., Tiwari, S., Avchar, R., Groenewald, M. & Baghela, A., Sept 2020, In: International Journal of Systematic and Evolutionary Microbiology. 70, 9, p. 4908-4913 6 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Agaricales 100%
  • mushroom 96%
  • Diptera 86%
  • mushrooms 78%
  • Drosophila 74%
• 2019

  Candida xylosifermentans sp. nov., a D-xylose-fermenting yeast species isolated in Thailand

  Kaewwichian, R., Khunnamwong, P., Am-In, S., Jindamorakot, S., Groenewald, M. & Limtong, S., Sept 2019, In: International Journal of Systematic and Evolutionary Microbiology. 69, 9, p. 2674-2680

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Elbamycella rosea gen. et sp. nov. (Juncigenaceae, Torpedosporales) isolated from the Mediterranean Sea

  Poli, A., Bovio, E., Verkley, G., Prigione, V. & Varese, G. C., 19 Jun 2019, In: MycoKeys. 55, p. 15-28

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Alismatales 100%
  • Mediterranean Sea 82%
  • Phaeophyta 74%
  • Phylogeny 57%
  • new genus 48%

• Eukaryotic Acquisition of a Bacterial Operon

  Kominek, J., Doering, D. T., Opulente, D. A., Shen, X-X., Zhou, X., DeVirgilio, J., Hulfachor, A. B., Groenewald, M., Mcgee, M. A., Karlen, S. D., Kurtzman, C. P., Rokas, A. & Hittinger, C. T., 07 Mar 2019, In: Cell. 176, 6, p. 1356-1366.e10

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• First fungemia case due to environmental yeast Wickerhamomyces myanmarensis: detection by multiplex qPCR and antifungal susceptibility

  Arastehfar, A., Bakhtiari, M., Daneshnia, F., Fang, W., Sadati, S. K., Al-Hatmi, A. M. S., Groenewald, M., Sharifi-Mehr, H., Liao, W., Pan, W., Zomorodian, K., Hagen, F. & Boekhout, T., Mar 2019, In: Future Microbiology. 14, 4, p. 267-274

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Fungal Biodiversity

  Crous, P. W., Verkley, G. J. M., Groenewald, E. & Houbraken, J., 2019, Westerdijk Fungal Biodiversity Institute. 425 p. (Westerdijk Laboratory Manual series; vol. 1)

  Research output: Book/Report › Book › Scientific

• Fungal biological resources to support international development: challenges and opportunities

  Ryan, M., McCluskey, K., Verkley, G. J. M., Robert, V. & Smith, D., Sept 2019, In: World Journal of Microbiology and Biotechnology. 35, p. 139 13 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • microbial genetic resources 100%
  • biological resources 71%
  • sustainable development 57%
  • infrastructure 54%
  • developed countries 54%

• Fungal Planet description sheets: 951-1041

  Crous, P. W., Wingfield, M. J., Lombard, L., Roets, F., Swart, W. J., Alvarado, P., Carnegie, A. J., Moreno, G., Luangsa-ard, J., Thangavel, R., Alexandrova, A. V., Baseia, I. G., Bellanger, J-M., Bessette, A. E., Bessette, A. R., De la Peña-Lastra, S., García, D., Gené, J., Pham, T. H. G., Heykoop, M., & 108 othersMalysheva, E., Malysheva, V., Martín, M. P., Morozova, O. V., Noisripoom, W., Overton, B. E., Rea, A. E., Sewall, B. J., Smith, M. E., Smyth, C. W., Tasanathai, K., Visagie, C. M., Adamčík, S., Alves, A., Andrade, J. P., Aninat, M. J., Araujo, R. V. B., Bordallo, J. J., Bonfleur, T., Baroncelli, R., Barreto, R. W., Bolin, J., Cabero, J., M. Caboň, M., Cafà, G., Caffot, M. L. H., Cai, L., Carlavilla, J. R., Chávez, R., de Castro, R. R. L., Delgat, L., Deschuyteneer, D., Dios, M. M., Domínguez, L. S., Evans, H. C., Eyssartier, G., Ferreira, B. W., Figueiredo, C. N., Liu, F., Fournier, J., Galli-Terasawa, L. V., Gil-Durán, C., Glienke, C., Gonçalves, M. F. M., Gryta, H., Guarro, J., Himaman, W., Hywel-Jones, N., Iturrieta-González, I., Ivanushkina, N. E., Jargeat, P., Khalid, A. N., Khan, J., Kiran, M., Kiss, L., Kochkina, G. A., Kolařík, M., Kubátová, A., Lodge, D. J., Loizides, M., Luque, D., Manjón, J. L., Marbach, P. A. S., Massola Jr, N. S., Mata, M., Miller, A. N., Mongkolsamrit, S., Moreau, P-A., Morte, A., Mujic, A., Navarro-Ródenas, A., Németh, M. Z., Nóbrega, T. F., Nováková, A., Olariaga, I., Ozerskaya, S. M., Palma, M. A., Petters-Vandresen, D. A. L., Piontelli, E., Popov, E. S., Rodríguez, A., Requejo, Ó., Rodrigues, A. C. M., Rong, I. H., Roux, J., Seifert, K. A., Silva, B. D. B., Sklenář, F., Smith, J. A., Sousa, J. O., Souza, H. G., De Souza, J. T., Švec, K., Tanchaud, P., Tanney, J. B., Terasawa, F., Thanakitpipattana, D., Torres-Garcia, D., Vaca, I., Vaghefi, N., van Iperen, A. L., Vasilenko, O. V., Verbeken, A., Yilmaz, N., Zamora, J. C., Zapata, M., Jurjević, Ž. & Groenewald, J. Z., 18 Dec 2019, p. 223-425. 203 p.

  Research output: Contribution to conference › Abstract › Scientific

  Open Access

  • leaves 100%
  • soil 59%
  • plant litter 55%
  • Eucalyptus 53%
  • leaf spot 40%

• Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation

  Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J. Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P. W., Robert, V. & Verkley, G. J. M., Mar 2019, In: Studies in Mycology. 92, p. 135-154 20 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal DNA 100%
  • Fungi (Kingdom) 97%
  • DNA barcoding 65%
  • Genetic Markers 63%
  • Fungi 54%

• Phylogenetic and Phylogenomic Definition of Rhizopus Species (vol 8, pg 2007, 2018)

  Gryganskyi, A. P., Golan, J., Dolatabadi, S., Mondo, S., Robb, S., Idnurm, A., Muszewska, A., Steczkiewicz, K., Masonjones, S., Liao, H. -L., Gajdeczka, M. T., Anike, F., Vuek, A., Anishchenko, I. M., Voigt, K., de Hoog, G. S., Smith, M. E., Heitman, J., Vilgalys, R. & Stajich, J. E., 01 Aug 2019, In: G3: Genes, Genomes, Genetics. 9, 8, p. 2789-2789

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• The ascomycete genus Niesslia and associated monocillium-like anamorphs

  Gams, W., Stielow, B., Gräfenhan, T. & Schroers, H., 01 Feb 2019, In: Mycological Progress. 18, 1-2, p. 5-76

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Wickerhamiella shivajii sp. nov., a thermotolerant yeast isolated from distillery effluent

  Avchar, R., Groenewald, M. & Baghela, A., Oct 2019, In: International Journal of Systematic and Evolutionary Microbiology. 69, 10, p. 3237-3242

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
• 2018

  (2609-2613) Proposals to conserve Amorphotheca resinae against Cladosporium avellaneum, Ditiola mucida (Holwaya mucida) against Acrospermum caliciiforme (Crinula caliciiformis), Lophodermium seditiosum against Leptostroma austriacum, Pezicula sporulosa against Gloeosporium longisporum (Cryptosporiopsis longispora), and Tapesia yallundae (Oculimacula yallundae) against Cercosporella herpotrichioides (Pseudocercosporella herpotrichioides) (Ascomycota: Leotiomycetes)

  Rossman, A. Y., Allen, W. C., Castlebury, L., Seifert, K. & Verkley, G., Jun 2018, In: Taxon. 67, 3, p. 636-+

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Adding flavor to beverages with non-conventional yeasts

  Ravasio, D., Carlin, S., Boekhout, T., Groenewald, M., Vrhovsek, U., Walther, A. & Wendland, J., 16 Feb 2018, In: Fermentation. 4, 1, p. 15

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Beverages 100%
  • Fermentation 91%
  • beverages 86%
  • Odorants 73%
  • flavor 71%

• MALDI-TOF MS as a tool to identify foodborne yeasts and yeast-like fungi

  Quintilla, R., Kolecka, A., Casaregola, S., Daniel, H-M., Houbraken, J., Kostrzewa, M., Boekhout, T. & Groenewald, M., 2018, In: International Journal of Food Microbiology. 266, p. 109-118 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum

  Shen, X-X., Opulente, D. A., Kominek, J., Zhou, X., Steenwyk, J. L., Buh, K. V., Haase, M. A. B., Wisecaver, J. H., Wang, M., Doering, D. T., Boudouris, J. T., Schneider, R. M., Langdon, Q. K., Ohkuma, M., Endoh, R., Takashima, M., Manabe, R., Čadež, N., Libkind, D., Rosa, C. A., & 6 othersDeVirgilio, J., Hulfachor, A. B., Groenewald, M., Kurtzman, C. P., Hittinger, C. T. & Rokas, A., 08 Nov 2018, In: Cell. 175, 6, p. 1533 - 1545.e20

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Saccharomycetales 100%
  • Metabolic 66%
  • Genome 55%
  • Horizontal Gene Transfer 54%
  • Phylogeny 24%

• The Yeasts, a new online and updatable platform for yeast diversity

  Boekhout, T., Daniel, H. -M., Groenewald, M., Yurkov, A., Bai, F. -Y. & Robert, V., Jun 2018, Abstracts ISHAM 2018 - Supplement. Issue suppl_2 ed. Vol. 56. p. S153-S153 (Medical Mycology).

  Research output: Chapter in book/volume › Contribution to conference proceedings › Scientific › peer-review

  Open Access
• 2017

  (2517-2519) Proposals to conserve the names Balansia claviceps against Ephelis mexicana, Claviceps paspali against Ustilagopsis deliquescens, and Tolypocladium inflatum against Cordyceps subsessilis (Ascomycota: Sordariomycetes: Hypocreales)

  Rossman, A. Y., Allen, W. C., Castlebury, L. A., Spatafora, J. W., Romero, A. I. & Verkley, G., 23 Jun 2017, In: Taxon. 66, 3, p. 749-U273

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Bakkersgist, Saccharomyces cervisiae

  Boekhout, T. & Groenewald, M., 2017, In: Cahiers Biowetenschappen en Maatschappij. 36, 4, p. 65-68

  Research output: Contribution to journal/periodical › Article › Professional

• Calycofera gen. nov an estuarine sister taxon to Phytopythium, Peronosporaceae

  Bennett, R. M., de Cock, A. W. A. M., Lévesque, C. A. & Thines, M., 01 Oct 2017, In: Mycological Progress. 16, 10, p. 947-954 8 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Description of Hyphopichia buzzinii f.a., sp. nov. and Hyphopichia homilentoma comb. nov., the teleomorph of Candida homilentoma

  Ribeiro, L. R., Santos, A. R. O., Groenewald, M., Smith, M. T. H., Lara, C. A., Góes-Neto, A., Jacques, N., Grondin, C., Casaregola, S., Lachance, M-A. & Rosa, C. A., Jul 2017, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 110, 7, p. 985-994 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Xylitol 100%
  • Comb and Wattles 99%
  • Candida 70%
  • Brazil 62%
  • French Guiana 56%