Westerdijk Fungal Biodiversity Institute - Collection - Research output - Royal Netherlands Academy of Arts and Sciences (KNAW)

2025

Fermentative and metabolic screening of candidate yeast strains hybridisable with Saccharomyces cerevisiae for beer production optimisation

Roldán-López, D., Groenewald, M. & Pérez-Torrado, R., 02 Jan 2025, In: International Journal of Food Microbiology. 426, 110899.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Orders of Ascomycota

Thiyagaraja, V., Hyde, K. D., Piepenbring, M., Davydov, E. A., Dai, D. Q., Abdollahzadeh, J., Bundhun, D., Chethana, K. W. T., Crous, P. W., Gajanayake, A. J., Gomdola, D., Haelewaters, D., Johnston, P. R., Mardones, M., Perera, R. H., Senanayake, I. C., Tibpromma, S., Yasanthika, W. A. E., Abbasi, M. W. & Abdel-Wahab, M. A. & 125 others, Absalan, S., Acharya, K., Afshari, N., Aouali, S., Aptroot, A., Apurillo, C. C. S., Armand, A., Avasthi, S., Bao, D. F., Bhat, D. J., Blondelle, A., Boonmee, S., Boonyuen, N., Braun, U., Čadež, N., Calabon, M. S., Cazabonne, J., Chakraborty, N., Cheewangkoon, R., Chen, K.-H., Coleine, C., Darmostuk, V., Daroodi, Z., Dasgupta, D., de Groot, M. D., De Hoog, S., Deng, W., Dissanayake, A. J., Dissanayake, L. S., Doilom, M., Dong, W., Dong, W., Ertz, D., Fortuna, J. L., Gautam, A. K., Gorczak, M., Groenewald, M., Groenewald, J. Z., Gunarathne, A., Han, Y., Hongsanan, S., Hou, C. L., Htet, Y. M., Htet, Z. H., Huang, Q., Huang, S. K., Huanraluek, N., Jayalal, R. G. U., Jayasiri, S. C., Jayawardena, R. S., Jiang, S. H., Jones, E. B. G., Karimi, O., Karunarathna, S. C., Khuna, S., Kossmann, T., Kularathnage, N. D., Lestari, A. S., Li, C. J. Y., Li, J. F., Lin, C. G., Liu, J. K., Liu, X., Liu, Y., Lu, L., Lu, Y. Z., Luo, Z. L., Ma, J., Madagammana, A. S., Maharachchikumbura, S. S. N., Marasinghe, D. S., Martzoukou, E., Marin-Felix, Y., Miller, A. N., Monkai, J., Noorabadi, M. T., Norphanphoun, C., Olariaga, I., Opiña, L. A. D., Pang, K. L., Peng, X., Péter, G., Phillips, A. J. L., Pineda, M. M., Prieto, M., Quan, Y., Quandt, A., Rajeshkumar, K. C., Rambold, G., Raymundo, T., Raza, M., Réblová, M., Samaradiwakara, N. P., Sarma, V. V., Schultz, M., Seifollahi, E., Selbmann, L., Su, H., Sun, Y. R., Tehler, A., Tennakoon, D. S., Thambugala, K. M., Tian, W. H., Tsurykau, A., Valenzuela, R., Verma, R. K., Wang, J., Wang, W. P., Wang, X. Y., Wang, Y., Wang, Z., Wei, D. P., Wen, T., Wijayawardene, N. N., Wimalasena, M. K., Worthy, F. R., Wu, H. X., Xu, L., Yakovchenko, L. S., Yu, F. M., Zeng, X. Y., Zhang, S. N., Zhang, Z. Y., Zhao, Q. & Wanasinghe, D. N., 18 May 2025, In: Mycosphere. 16, p. 536-1411 876 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

2024

20 years of bibliometric data illustrates a lack of concordance between journal impact factor and fungal species discovery in systematic mycology

Nilsson, R. H., Jansson, A. T., Wurzbacher, C., Anslan, S., Belford, P., Corcoll, N., Dombrowski, A., Ghobad-Nejhad, M., Gustavsson, M., Gómez-Martínez, D., Kalsoom Khan, F., Khomich, M., Lennartsdotter, C., Lund, D., Van Der Merwe, B., Mikryukov, V., Peterson, M., Porter, T. M., Põlme, S. & Retter, A. & 7 others, Sanchez-Garcia, M., Svantesson, S., Svedberg, P., Vu, D., Ryberg, M., Abarenkov, K. & Kristiansson, E., Nov 2024, In: MycoKeys. 110, p. 273-285 13 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Blastobotrys nigripullensis, a new yeast species isolated from a fungal outbreak on an ancient Roman shipwreck in the Netherlands

Visagie, C. M., Meijer, M., Kraak, B., Groenewald, M., Houbraken, J., Theelen, B., Vorst, Y. & Boekhout, T., Jan 2024, In: Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology. 117, 1, 22.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Diverse signatures of convergent evolution in cactus-associated yeasts

Gonçalves, C., Harrison, M. C., Steenwyk, J. L., Opulente, D. A., LaBella, A. L., Wolters, J. F., Zhou, X., Shen, X. X., Groenewald, M., Hittinger, C. T. & Rokas, A., Sept 2024, In: PLoS Biology. 22, 9, e3002832.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

First DNA Barcoding Survey in Bulgaria Unveiled Huge Diversity of Yeasts in Insects

Dimitrov, R., Gouliamova, D., Guéorguiev, B., Smith, M., Groenewald, M. & Boekhout, T., Aug 2024, In: Insects. 15, 8, 566.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon

Sun, L., David, K. T., Wolters, J. F., Karlen, S. D., Gonçalves, C., Opulente, D. A., LaBella, A. L., Groenewald, M., Zhou, X., Shen, X. X., Rokas, A. & Hittinger, C. T., 01 Apr 2024, In: Molecular Biology and Evolution. 41, 4

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Fungal Planet description sheets: 1697-1780

Crous, P. W., Wingfield, M. J., Jurjević, Ž., Balashov, S., Osiek, E. R., Marin-Felix, Y., Luangsa-ard, J. J., Mejía, L. C., Cappelli, A., Parra, L. A., Lucchini, G., Chen, J., Moreno, G., Faraoni, M., Zhao, R. L., Weholt, Ø., Borovička, J., Jansen, G. M., Shivas, R. G. & Tan, Y. P. & 112 others, Akulov, A., Alfenas, A. C., Alfenas, R. F., Altés, A., Avchar, R., Barreto, R. W., Catcheside, D. E. A., Chi, T. Y., Esteve-Raventós, F., Fryar, S. C., Hanh, L. T. M., Larsbrink, J., Oberlies, N. H., Olsson, L., Pancorbo, F., Raja, H. A., Thanh, V. N., Thuy, N. T., Ajithkumar, K., Akram, W., Alvarado, P., Angeletti, B., Arumugam, E., Atashi Khalilabad, A., Bandini, D., Baroni, T. J., Barreto, G. G., Boertmann, D., Bose, T., Castañeda-Ruiz, R. F., Couceiro, A., Cykowska-Marzencka, B., Dai, Y. C., Darmostuk, V., da Silva, S. B. G., Dearnaley, J. D. W., de Azevedo Santiago, A. L. C. M., Declercq, B., de Freitas, L. W. S., De la Peña-Lastra, S., Delgado, G., de Lima, C. L. F., Dhotre, D., Dirks, A. C., Eisvand, P., Erhard, A., Ferro, L. O., García, D., García-Martín, A., Garrrido-Benavent, I., Gené, J., Ghobad-Nejhad, M., Gore, G., Gunaseelan, S., Gusmão, L. F. P., Hammerbacher, A., Hernández-Perez, A. T., Hernández-Restrepo, M., Hofmann, T. A., Hubka, V., Jiya, N., Kaliyaperumal, M., Keerthana, K. S., Ketabchi, M., Kezo, K., Knoppersen, R., Kolarczyková, D., Kumar, T. K. A., Læssøe, T., Langer, E., Larsson, E., Lodge, D. J., Lynch, M. J., Maciá-Vicente, J. G., Mahadevakumar, S., Mateos, A., Mehrabi-Koushki, M., Miglio, B. V., Noor, A., Oliveira, J. A., Pereira, O. L., Piatek, M., Pinto, A., Ramírez, G. H., Raphael, B., Rawat, G., Renuka, M., Reschke, K., Ruiz Mateo, A., Saar, I., Saba, M., Safi, A., Sánchez, R. M., Sandoval-Denis, M., Savitha, A. S., Sharma, A., Shelke, D., Sonawame, D., Souza, M. G. A. P., Stryjak-Bogacka, M., Thines, M., Thomas, A., Torres-Garcia, D., Traba, J. M., Vauras, J., Vermaas, M., Villarreal, M., Vu, D., Whiteside, E. J., Zafari, D., Starink-Willemse, M. & Groenewald, J. Z., Dec 2024, In: Fungal Systematics and Evolution. 14, p. 325-577 253 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Genome Analysis of a Newly Discovered Yeast Species, Hanseniaspora menglaensis

Ryan, A. P., Groenewald, M., Smith, M. T., Holohan, C., Boekhout, T., Wolfe, K. H. & Butler, G., Mar 2024, In: Journal of Fungi. 10, 3, 180.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

2 Citations (Scopus)

Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts

Opulente, D. A., LaBella, A. L., Harrison, M. C., Wolters, J. F., Liu, C., Li, Y., Kominek, J., Steenwyk, J. L., Stoneman, H. R., VanDenAvond, J., Miller, C. R., Langdon, Q. K., Silva, M., Gonçalves, C., Ubbelohde, E. J., Li, Y., Buh, K. V., Jarzyna, M., Haase, M. A. B. & Rosa, C. A. & 12 others, Čadež, N., Libkind, D., DeVirgilio, J. H., Hulfachor, A. B., Kurtzman, C. P., Sampaio, J. P., Gonçalves, P., Zhou, X., Shen, X. X., Groenewald, M., Rokas, A. & Hittinger, C. T., 26 Apr 2024, In: Science. 384, 6694, eadj4503.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

26 Citations (Scopus)

Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion

Kidd, S. E., Hagen, F., Halliday, C. L., Abdolrasouli, A., Boekhout, T., Crous, P. W., Ellis, D. H., Elvy, J., Forrest, G. N., Groenewald, M., Hahn, R. C., Houbraken, J., Rodrigues, A. M., Scott, J., Sorrell, T. C., Summerbell, R. C., Tsui, C. K. M., Yurkov, A. & Chen, S.C.-A., 05 Mar 2024, (E-pub ahead of print) In: Journal of Clinical Microbiology. p. e0157023

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Machine learning enables identification of an alternative yeast galactose utilization pathway

Harrison, M. C., Ubbelohde, E. J., LaBella, A. L., Opulente, D. A., Wolters, J. F., Zhou, X., Shen, X. X., Groenewald, M., Hittinger, C. T. & Rokas, A., 30 Apr 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 18, e2315314121.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

9 Citations (Scopus)

Mjuua agapanthi gen. et sp. nov., a biotrophic mycoparasite of Fusarium spp.

Crous, P. W., Dijksterhuis, J., Figge, M. & Sandoval-Denis, M., Jun 2024, In: Fungal Systematics and Evolution. 13, p. 153-161 9 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

MycoAI: Fast and accurate taxonomic classification for fungal ITS sequences

Romeijn, L., Bernatavicius, A. & Vu, D., Nov 2024, In: Molecular Ecology Resources. 24, 8, e14006.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Nakazawaea atacamensis f.a., sp. nov. a novel nonconventional fermentative ascomycetous yeast species from the Atacama Desert

Araya, M., Villarreal, P., Moyano, T., Santos, A. R. O., Díaz, F. P., Bustos-Jarufe, A., Urbina, K., del Pino, J. E., Groenewald, M., Gutiérrez, R. A., Rosa, C. A. & Cubillos, F. A., Jan 2024, In: Yeast. 41, 1-2, p. 52-63 12 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

2 Citations (Scopus)

Saccharomycotina yeasts defy long-standing macroecological patterns

David, K. T., Harrison, M. C., Opulente, D. A., LaBella, A. L., Wolters, J. F., Zhou, X., Shen, X. X., Groenewald, M., Pennell, M., Hittinger, C. T. & Rokas, A., 05 Mar 2024, In: Proceedings of the National Academy of Sciences of the United States of America. 121, 10, e2316031121.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

6 Citations (Scopus)

Taxonomic revision of Geotrichum and Magnusiomyces, with the descriptions of five new Geotrichum species from China

Zhu, H. Y., Shang, Y. J., Wei, X. Y., Groenewald, M., Robert, V., Zhang, R. P., Li, A. H., Han, P. J., Ji, F., Li, J. N., Liu, X. Z. & Bai, F. Y., 2024, In: Mycology. 15, 3, p. 400-423 24 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

7 Citations (Scopus)

The 2024 Outline of Fungi and fungus-like taxa

Hyde, K. D., Noorabadi, M. T., Thiyagaraja, V., He, M. Q., Johnston, P. R., Wijesinghe, S. N., Armand, A., Biketova, A. Y., Chethana, K. W. T., Erdoğdu, M., Ge, Z. W., Groenewald, J. Z., Hongsanan, S., Kušan, I., Leontyev, D. V., Li, D. W., Lin, C. G., Liu, N. G., Maharachchikumbura, S. S. N. & Matočec, N. & 511 others, May, T. W., McKenzie, E. H. C., Mešić, A., Perera, R. H., Phukhamsakda, C., Piątek, M., Samarakoon, M. C., Selcuk, F., Senanayake, I. C., Tanney, J. B., Tian, Q., Vizzini, A., Wanasinghe, D. N., Wannasawang, N., Wijayawardene, N. N., Zhao, R. L., Abdel-Wahab, M. A., Abdollahzadeh, J., Abeywickrama, P. D., Absalan, S., Acharya, K., Afshari, N., Afshan, N. S., Afzalinia, S., Ahmadpour, S. A., Akulov, O., Alizadeh, A., Alizadeh, M., Al-Sadi, A. M., Alves, A., Alves, V. C. S., Alves-Silva, G., Antonín, V., Aouali, S., Aptroot, A., Apurillo, C. C. S., Arias, R. M., Asgari, B., Asghari, R., Assis, D. M. A., Assyov, B., Atienza, V., Aumentado, H. D. R., Avasthi, S., Azevedo, E., Bakhshi, M., Bao, D. F., Baral, H. O., Barata, M., Barbosa, K. D., Barbosa, R. N., Barbosa, F. R., Baroncelli, R., Barreto, G. G., Baschien, C., Bennett, R. M., Bera, I., Bezerra, J. D. P., Bhunjun, C. S., Bianchinotti, M. V., Błaszkowski, J., Boekhout, T., Bonito, G. M., Boonmee, S., Boonyuen, N., Bortnikov, F. M., Bregant, C., Bundhun, D., Burgaud, G., Buyck, B., Caeiro, M. F., Cabarroi-Hernández, M., Cai, M. F., Cai, L., Calabon, M. S., Calaça, F. J. S., Callalli, M., Câmara, M. P. S., Cano-Lira, J., Cao, B., Carlavilla, J. R., Carvalho, A., Carvalho, T. G., Castañeda-Ruiz, R. F., Catania, M. D. V., Cazabonne, J., Cedeño-Sanchez, M., Chaharmiri-Dokhaharani, S., Chaiwan, N., Chakraborty, N., Cheewankoon, R., Chen, C., Chen, J., Chen, Q., Chen, Y. P., Chinaglia, S., Coelho-Nascimento, C. C., Coleine, C., Costa-Rezende, D. H., Cortés-Pérez, A., Crouch, J. A., Crous, P. W., Cruz, R. H. S. F., Czachura, P., Damm, U., Darmostuk, V., Daroodi, Z., Das, K., Das, K., Davoodian, N., Davydov, E. A., da Silva, G. A., da Silva, I. R., da Silva, R. M. F., da Silva Santos, A. C., Dai, D. Q., Dai, Y. C., de Groot, M. D., De Kesel, A., De Lange, R., de Medeiros, E. V., de Souza, C. F. A., de Souza, F. A., dela Cruz, T. E. E., Decock, C., Delgado, G., Denchev, C. M., Denchev, T. T., Deng, Y. L., Dentinger, B. T. M., Devadatha, B., Dianese, J. C., Dima, B., Doilom, M., Dissanayake, A. J., Dissanayake, D. M. L. S., Dissanayake, L. S., Diniz, A. G., Dolatabadi, S., Dong, J. H., Dong, W., Dong, Z. Y., Drechsler-Santos, E. R., Druzhinina, I. S., Du, T. Y., Dubey, M. K., Dutta, A. K., Elliott, T. F., Elshahed, M. S., Egidi, E., Eisvand, P., Fan, L., Fan, X., Fan, X. L., Fedosova, A. G., Ferro, L. O., Fiuza, P. O., Flakus, A., Fonseca, E. O., Fryar, S. C., Gabaldón, T., Gajanayake, A. J., Gannibal, P. B., Gao, F., García-Sánchez, D., García-Sandoval, R., Garrido-Benavent, I., Garzoli, L., Gasca-Pineda, J., Gautam, A. K., Gené, J., Ghobad-Nejhad, M., Ghosh, A., Giachini, A. J., Gibertoni, T. B., Gentekaki, E., Gmoshinskiy, V. I., Góes-Neto, A., Gomdola, D., Gorjón, S. P., Goto, B. T., Granados-Montero, M. M., Griffith, G. W., Groenewald, M., Grossart, H.-P., Gu, Z. R., Gueidan, C., Gunarathne, A., Gunaseelan, S., Guo, S. L., Gusmão, L. F. P., Gutierrez, A. C., Guzmán-Dávalos, L., Haelewaters, D., Haituk, H., Halling, R. E., He, S. C., Heredia, G., Hernández-Restrepo, M., Hosoya, T., Hoog, S. D., Horak, E., Hou, C. L., Houbraken, J., Htet, Z. H., Huang, S. K., Huang, W. J., Hurdeal, V. G., Hustad, V. P., Inácio, C. A., Janik, P., Jayalal, R. G. U., Jayasiri, S. C., Jayawardena, R. S., Jeewon, R., Jerônimo, G. H., Jin, J., Jones, E. B. G., Joshi, Y., Jurjević, Ž., Justo, A., Kakishima, M., Kaliyaperumal, M., Kang, G. P., Kang, J. C., Karimi, O., Karunarathna, S. C., Karpov, S. A., Kezo, K., Khalid, A. N., Khan, M. K., Khuna, S., Khyaju, S., Kirchmair, M., Klawonn, I., Kraisitudomsook, N., Kukwa, M., Kularathnage, N. D., Kumar, S., Lachance, M. A., Lado, C., Latha, K. P. D., Lee, H. B., Leonardi, M., Lestari, A. S., Li, C., Li, H., Li, J., Li, Q., Li, Y., Li, Y. C., Li, Y. X., Liao, C. F., Lima, J. L. R., Lima, J. M. S., Lima, N. B., Lin, L., Linaldeddu, B. T., Linn, M. M., Liu, F., Liu, J. K., Liu, J. W., Liu, S., Liu, S. L., Liu, X. F., Liu, X. Y., Longcore, J. E., Luangharn, T., Luangsa-ard, J. J., Lu, L., Lu, Y. Z., Lumbsch, H. T., Luo, L., Luo, M., Luo, Z. L., Ma, J., Madagammana, A. D., Madhushan, A., Madrid, H., Magurno, F., Magyar, D., Mahadevakumar, S., Malosso, E., Malysh, J. M., Mamarabadi, M., Manawasinghe, I. S., Manfrino, R. G., Manimohan, P., Mao, N., Mapook, A., Marchese, P., Marasinghe, D. S., Mardones, M., Marin-Felix, Y., Masigol, H., Mehrabi, M., Mehrabi-Koushki, M., de Meiras-Ottoni, A., Melo, R. F. R., Mendes-Alvarenga, R. L., Mendieta, S., Meng, Q. F., Menkis, A., Menolli, J. N., Mikšík, M., Miller, S. L., Moncada, B., Moncalvo, J. M., Monteiro, J. S., Monteiro, M., Mora-Montes, H. M., Moroz, E. L., Moura, J. C., Muhammad, U., Mukhopadhyay, S., Nagy, G. L., Najam ul Sehar, A., Najafiniya, M., Nanayakkara, C. M., Naseer, A., Nascimento, E. C. R., Nascimento, S. S., Neuhauser, S., Neves, M. A., Niazi, A. R., Nie, Y., Nilsson, R. H., Nogueira, P. T. S., Novozhilov, Y. K., Noordeloos, M., Norphanphoun, C., Nuñez Otaño, N., O’Donnell, R. P., Oehl, F., Oliveira, J. A., Oliveira, J. I., Oliveira, N. V. L., Oliveira, P. H. F., Orihara, T., Oset, M., Pang, K. L., Papp, V., Pathirana, L. S., Peintner, U., Pem, D., Pereira, O. L., Pérez-Moreno, J., Pérez-Ortega, S., Péter, G., Pires-Zottarelli, C. L. A., Phonemany, M., Phongeun, S., Pošta, A., Prazeres, J. F. S. A., Quan, Y., Quandt, C. A., Queiroz, M. B., Radek, R., Rahnama, K., Raj, K. N. A., Rajeshkumar, K. C., Rajwar, S., Ralaiveloarisoa, A. B., Rämä, T., Ramírez-Cruz, V., Rambold, G., Rathnayaka, A. R., Raza, M., Ren, G. C., Rinaldi, A. C., Rivas-Ferreiro, M., Robledo, G. L., Ronikier, A., Rossi, W., Rusevska, K., Ryberg, M., Safi, A., Salimi, F., Salvador-Montoya, C. A., Samant, B., Samaradiwakara, N. P., Sánchez-Castro, I., Sandoval-Denis, M., Santiago, A. L. C. M. A., Santos, A. C. D. S., dos Santos, L. A., Sarma, V. V., Sarwar, S., Savchenko, A., Savchenko, K., Saxena, R. K., Schoutteten, N., Selbmann, L., Ševčíková, H., Sharma, A., Shen, H. W., Shen, Y. M., Shu, Y. X., Silva, H. F., Silva-Filho, A. G. S., Silva, V. S. H., Simmons, D. R., Singh, R., Sir, E. B., Sohrabi, M., Souza, F. A., Souza-Motta, C. M., Sri-indrasutdhi, V., Sruthi, O. P., Stadler, M., Stemler, J., Stephenson, S. L., Stoyneva-Gaertner, M. P., Strassert, J. F. H., Stryjak-Bogacka, M., Su, H., Sun, Y. R., Svantesson, S., Sysouphanthong, P., Takamatsu, S., Tan, T. H., Tanaka, K., Tang, C., Tang, X., Taylor, J. E., Taylor, P. W. J., Tennakoon, D. S., Thakshila, S. A. D., Thambugala, K. M., Thamodini, G. K., Thilanga, D., Thines, M., Tiago, P. V., Tian, X. G., Tian, W. H., Tibpromma, S., Tkalčec, Z., Tokarev, Y. S., Tomšovský, M., Torruella, G., Tsurykau, A., Udayanga, D., Ulukapı, M., Untereiner, W. A., Usman, M., Uzunov, B. A., Vadthanarat, S., Valenzuela, R., Van den Wyngaert, S., Van Vooren, N., Velez, P., Verma, R. K., Vieira, L. C., Vieira, W. A. S., Vinzelj, J. M., Tang, A. M. C., Walker, A., Walker, A. K., Wang, Q. M., Wang, Y., Wang, X. Y., Wang, Z. Y., Wannathes, N., Wartchow, F., Weerakoon, G., Wei, D. P., Wei, X., White, J. F., Wijesundara, D. S. A., Wisitrassameewong, K., Worobiec, G., Wu, H. X., Wu, N., Xiong, Y. R., Xu, B., Xu, J. P., Xu, R., Xu, R. F., Xu, R. J., Yadav, S., Yakovchenko, L. S., Yang, H. D., Yang, X., Yang, Y. H., Yang, Y. Y., Yang, Y. Y., Yoshioka, R., Youssef Noha, H., Yu, F. M., Yu, Z. F., Yuan, L. L., Yuan, Q., Zabin, D. A., Zamora, J. C., Zapata, C. V., Zare, R., Zeng, M., Zeng, X. Y., Zhang, J. F., Zhang, J. Y., Zhang, S., Zhang, X. C., Zhao, C. L., Zhao, H., Zhao, H. J., Zhao, Q., Zhou, H. M., Zhu, X. Y., Zmitrovich, I. V., Zucconi, L. & Zvyagina, E., Nov 2024, In: Mycosphere. 15, 1, p. 5146-6239 1094 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

89 Citations (Scopus)

The best of both worlds: a proposal for further integration of Candidatus names into the International Code of Nomenclature of Prokaryotes

Arahal, D., Bisgaard, M., Christensen, H., Clermont, D., Dijkshoorn, L., Duim, B., Emler, S., Figge, M., Göker, M., Moore, E. R. B., Nemec, A., Nørskov-Lauritsen, N., Nübel, U., On, S. L. W., Vandamme, P. & Ventosa, A., 05 Jan 2024, In: International Journal of Systematic and Evolutionary Microbiology. 74, 1, 006188.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

15 Citations (Scopus)

What are the 100 most cited fungal genera?

Bhunjun, C. S., Chen, Y. J., Phukhamsakda, C., Boekhout, T., Groenewald, J. Z., Mckenzie, E. H. C., Francisco, E. C., Frisvad, J. C., Groenewald, M., Hurdeal, V. G., Luangsa-Ard, J., Perrone, G., Visagie, C. M., Bai, F. Y., Błaszkowski, J., Braun, U., de Souza, F. A., de Queiroz, M. B., Dutta, A. K. & Gonkhom, D. & 130 others, Goto, B. T., Guarnaccia, V., Hagen, F., Houbraken, J., Lachance, M. A., Li, J. J., Luo, K. Y., Magurno, F., Mongkolsamrit, S., Robert, V., Roy, N., Tibpromma, S., Wanasinghe, D. N., Wang, D. Q., Wei, D. P., Zhao, C. L., Aiphuk, W., Ajayi-Oyetunde, O., Arantes, T. D., Araujo, J. C., Begerow, D., Bakhshi, M., Barbosa, R. N., Behrens, F. H., Bensch, K., Bezerra, J. D. P., Bilaski, P., Bradley, C. A., Bubner, B., Burgess, T. I., Buyck, B., Adež, N., Cai, L., Calaça, F. J. S., Campbell, L. J., Chaverri, P., Chen, Y. J., Chethana, K. W. T., Coetzee, B., Costa, M. M., Chen, Q., Custódio, F. A., Dai, Y. C., Damm, U., Santiago, A. L. C. M. A., De Angelini, R. M. M., Dijksterhuis, J., Dissanayake, A. J., Doilom, M., Dong, W., álvarez-Duarte, E., Fischer, M., Gajanayake, A. J., Gené, J., Gomdola, D., Gomes, A. A. M., Hausner, G., He, M. Q., Hou, L., Iturrieta-González, I., Jami, F., Jankowiak, R., Jayawardena, R. S., Kandemir, H., Kiss, L., Kobmoo, N., Kowalski, T., Landi, L., Lin, C. G., Liu, J. K., Liu, X. B., Loizides, M., Luangharn, T., Maharachchikumbura, S. S. N., Mkhwanazi, G. J. M., Manawasinghe, I. S., Marin-Felix, Y., Mctaggart, A. R., Moreau, P. A., Morozova, O. V., Mostert, L., Osiewacz, H. D., Pem, D., Phookamsak, R., Pollastro, S., Pordel, A., Poyntner, C., Phillips, A. J. L., Phonemany, M., Promputtha, I., Rathnayaka, A. R., Rodrigues, A. M., Romanazzi, G., Rothmann, L., Salgado-Salazar, C., Sandoval-Denis, M., Saupe, S. J., Scholler, M., Scott, P., Shivas, R. G., Silar, P., Silva-Filho, A. G. S., Souza-Motta, C. M., Spies, C. F. J., Stchigel, A. M., Sterflinger, K., Summerbell, R. C., Svetasheva, T. Y., Takamatsu, S., Theelen, B., Theodoro, R. C., Thines, M., Thongklang, N., Torres, R., Turchetti, B., Van Den Brule, T., Wang, X. W., Wartchow, F., Welti, S., Wijesinghe, S. N., Wu, F., Xu, R., Yang, Z. L., Yilmaz, N., Yurkov, A., Zhao, L., Zhao, R. L., Zhou, N., Hyde, K. D. & Crous, P. W., 15 Jul 2024, In: Studies in Mycology. 108, p. 1-411 411 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

36 Citations (Scopus)

2023

A genome-informed higher rank classification of the biotechnologically important fungal subphylum Saccharomycotina

Groenewald, M., Hittinger, C. T., Bensch, K., Opulente, D. A., Shen, X. X., Li, Y., Liu, C., LaBella, A. L., Zhou, X., Limtong, S., Jindamorakot, S., Gonçalves, P., Robert, V., Wolfe, K. H., Rosa, C. A., Boekhout, T., Čadež, N., Péter, G., Sampaio, J. P. & Lachance, M. A. & 8 others, Yurkov, A. M., Daniel, H. M., Takashima, M., Boundy-Mills, K., Libkind, D., Aoki, K., Sugita, T. & Rokas, A., 2023, In: Studies in Mycology. 105, p. 1-22 22 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

61 Citations (Scopus)

A transformer architecture for retention time prediction in liquid chromatography mass spectrometry-based proteomics

Pham, T. V., Nguyen, V. V., Vu, D., Henneman, A. A., Richardson, R. A., Piersma, S. R. & Jimenez, C. R., Apr 2023, In: Proteomics. 23, 7-8, p. e2200041

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

6 Citations (Scopus)

Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex

de Jong, A. W., Al-Obaid, K., Mohd Tap, R., Gerrits van den Ende, B., Groenewald, M., Joseph, L., Ahmad, S. & Hagen, F., 03 Feb 2023, In: Medical Mycology. 61, 2

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

18 Citations (Scopus)

Comparing genomic variant identification protocols for Candida auris

Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M.-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d'Enfert, C., Engelthaler, D. M., Eyre, D. W. & Fisher, M. C. & 6 others, Hagen, F., Meyer, W., Singh, G., Alastruey-Izquierdo, A., Litvintseva, A. P. & Cuomo, C. A., 13 Apr 2023, In: Microbial genomics. 9, 4

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

8 Citations (Scopus)

Cylindromonium dirinariae sp. nov. (Ascomycota, Hypocreales), a new nectrioid lichenicolous species on Dirinaria applanata in Japan

Ohmaki, A., Okane, I., Crous, P. W. & Verkley, G. J. M., Jun 2023, In: Fungal Systematics and Evolution. 11, p. 1-10 10 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Fungal Planet description sheets: 1478-1549

Crous, P. W., Osieck, E. R., Shivas, R. G., Tan, Y. P., Bishop-Hurley, S. L., Esteve-Raventos, F., Larsson, E., Luangsa-ard, J. J., Pancorbo, F., Balashov, S., Baseia, I. G., Boekhout, T., Chandranayaka, S., Cowan, D. A., Cruz, R. H. S. F., Czachura, P., De la Peña-Lastra, S., Dovana, F., Drury, B. & Fell, J. & 126 others, Flakus, A., Fotedar, R., Jurjevi, .., Kolecka, A., Mack, J., Maggs-Kölling, G., Mahadevakumar, S., Mateos, A., Mongkolsamrit, S., Noisripoom, W., Plaza, M., Overy, D. P., Piątek, M., Sandoval-Denis, M., Vauras, J., Wingfield, M. J., Abell, S. E., Ahmadpour, A., Akulov, A., Alavi, F., Alavi, Z., Altes, A., Alvarado, P., Anand, G., Ashtekar, N., Assyov, B., Banc-Prandi, G., Barbosa, K. D., Barreto, G. G., Bellanger, J. M., Bezerra, J. L., Bhat, D. J., Bilaski, P., Bose, T., Bozok, F., Chaves, J., Costa-Rezende, D. H., Danteswari, C., Darmostuk, V., Delgado, G., Denman, S., Eichmeier, A., Etayo, J., Eyssartier, G., Faulwetter, S., Ganga, K. G. G., Ghosta, Y., Goh, J., Gois, J. S., Gramaje, D., Granit, L., Groenewald, M., Gulden, G., Gusmão, L. F. P., Hammerbacher, A., Heidarian, Z., Hywel-Jones, N., Jankowiak, R., Kaliyaperumal, M., Kaygusuz, O., Kezo, K., Khonsanit, A., Kumar, S., Kuo, C. H., T., L., Latha, K. P. D., Loizides, M., Luo, S. M., Macia-Vicente, J. G., Manimohan, P., Marbach, P. A. S., Marinho, P., Marney, T. S., Marques, G., Martın, M. P., Miller, A. N., Mondello, F., Moreno, G., Mufeeda, K. T., Mun, H. Y., Nau, T., Nkomo, T., Okrasiska, A., Oliveira, J. P. A. F., Oliveira, R. L., Ortiz, D. A., Pawowska, J., Perez-De-Gregorio, M. `., Podile, A. R., Portugal, A., Privitera, N., Rajeshkumar, K. C., Rauf, I., Rian, B., Rigueiro-Rodrıguez, A., Rivas-Torres, G. F., Rodriguez-Flakus, P., Romero-Gordillo, M., Saar, I., Saba, M., Santos, C. D., Sarma, P. V. S. R. N., Siquier, J. L., Sleiman, S., Spetik, M., Sridhar, K. R., Stryjak-Bogacka, M., Szczepaska, K., Taikn, H., Tennakoon, D. S., Thanakitpipattana, D., Trovão, J., Türkekul, A., van Iperen, A. L., van 't Hof, P., Vasquez, G., Visagie, C. M., Wingfield, B. D., Wong, P. T. W., Yang, W. X., Yarar, M., Yarden, O., Yilmaz, N., Zhang, N., Zhu, Y. N. & Groenewald, J. Z., Jun 2023, In: Persoonia. 50, 1, p. 158-310 153 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

49 Citations (Scopus)

Fungal Planet description sheets: 1550-1613

Crous, P. W., Costa, M. M., Kandemir, H., Vermaas, M., Vu, D., Zhao, L., Arumugam, E., Flakus, A., Jurjević, Ž., Kaliyaperumal, M., Mahadevakumar, S., Murugadoss, R., Shivas, R. G., Tan, Y. P., Wingfield, M. J., Abell, S. E., Marney, T. S., Danteswari, C., Darmostuk, V. & Denchev, C. M. & 98 others, Denchev, T. T., Etayo, J., Gené, J., Gunaseelan, S., Hubka, V., Illescas, T., Jansen, G. M., Kezo, K., Kumar, S., Larsson, E., Mufeeda, K. T., Piątek, M., Rodriguez-Flakus, P., Sarma, P. V. S. R. N., Stryjak-Bogacka, M., Torres-Garcia, D., Vauras, J., Acal, D. A., Akulov, A., Alhudaib, K., Asif, M., Balashov, S., Baral, H.-O., Baturo-Cieśniewska, A., Begerow, D., Beja-Pereira, A., Bianchinotti, M. V., Bilański, P., Chandranayaka, S., Chellappan, N., Cowan, D. A., Custódio, F. A., Czachura, P., Delgado, G., De Silva, N. I., Dijksterhuis, J., Dueñas, M., Eisvand, P., Fachada, V., Fournier, J., Fritsche, Y., Fuljer, F., Ganga, K. G. G., Guerra, M. P., Hansen, K., Hywel-Jones, N., Ismail, A. M., Jacobs, C. R., Jankowiak, R., Karich, A., Kemler, M., Kisło, K., Klofac, W., Krisai-Greilhuber, I., Latha, K. P. D., Lebeuf, R., Lopes, M. E., Lumyong, S., Maciá-Vicente, J. G., Maggs-Kölling, G., Magistà, D., Manimohan, P., Martín, M. P., Mazur, E., Mehrabi-Koushki, M., Miller, A. N., Mombert, A., Ossowska, E. A., Patejuk, K., Pereira, O. L., Piskorski, S., Plaza, M., Podile, A. R., Polhorský, A., Pusz, W., Raza, M., Ruszkiewicz-Michalska, M., Saba, M., Sánchez, R. M., Singh, R., Śliwa, L., Smith, M. E., Stefenon, V. M., Strašiftáková, D., Suwannarach, N., Szczepańska, K., Telleria, M. T., Tennakoon, D. S., Thines, M., Thorn, R. G., Urbaniak, J., van der Vegte, M., Vasan, V., Vila-Viçosa, C., Voglmayr, H., Wrzosek, M., Zappelini, J. & Groenewald, J. Z., 30 Dec 2023, In: Persoonia. 51, p. 280-417 138 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

36 Citations (Scopus)

Global consortium for the classification of fungi and fungus-like taxa

Hyde, K. D., Abdel-Wahab, M. A., Abdollahzadeh, J., Abeywickrama, P. D., Absalan, S., Afshari, N., Ainsworth, A. M., Akulov, O. Y., Aleoshin, V. V., Al-Sadi, A. M., Alvarado, P., Alves, A., Alves-Silva, G., Amalfi, M., Amira, Y., Amuhenage, T. B., Anderson, J., Antonín, V., Aouali, S. & Aptroot, A. & 530 others, Apurillo, C. C. S., Araújo, J. P. M., Ariyawansa, H. A., Armand, A., Arumugam, E., Asghari, R., Assis, D. M. A., Atienza, V., Avasthi, S., Azevedo, E., Bahkali, A. H., Bakhshi, M., Banihashemi, Z., Bao, D. F., Baral, H. O., Barata, M., Barbosa, F., Barbosa, R. N., Barreto, R. W., Baschien, C., Belamesiatseva, D. B., Bennett Reuel, M., Bera, I., Bezerra, J. D. P., Bezerra, J. L., Bhat, D. J., Bhunjun, C. S., Bianchinotti, M. V., Błaszkowski, J., Blondelle, A., Boekhout, T., Bonito, G., Boonmee, S., Boonyuen, N., Bregant, C., Buchanan, P., Bundhun, D., Burgaud, G., Burgess, T., Buyck, B., Cabarroi-Hernández, M., Cáceres, M. E. S., Caeiro, M. F., Cai, L., Cai, M. F., Calabon, M. S., Calaça, F. J. S., Callalli, M., Camara, M. P. S., Cano-Lira, J. F., Cantillo, T., Cao, B., Carlavilla, J. R., Carvalho, A., Castañeda-Ruiz, R. F., Castlebury, L., Castro-Jauregui, O., Catania, M. D. V., Cavalcanti, L. H., Cazabonne, J., Cedeño-Sanchez, M. L., Chaharmiri-Dokhaharani, S., Chaiwan, N., Chakraborty, N., Chaverri, P., Cheewangkoon, R., Chen, C., Chen, C. Y., Chen, K. H., Chen, J., Chen, Q., Chen, W. H., Chen, Y. P., Chethana, K. W. T., Coleine, C., Condé, T. O., Corazon-Guivin, M. A., Cortés-Pérez, A., Costa-Rezende, D. H., Courtecuisse, R., Crouch, J. A., Crous, P. W., Cui, B. K., Cui, Y. Y., da Silva, D. K. A., da Silva, G. A., da Silva, I. R., da Silva, R. M. F., da Silva Santos, A. C., Dai, D. Q., Dai, Y. C., Damm, U., Darmostuk, V., Daroodi, Z., Das, K., Das, K., Davoodian, N., Davydov, E. A., Dayarathne, M. C., Decock, C., de Groot, M. D., De Kesel, A., dela Cruz, T. E. E., De Lange, R., Delgado, G., Denchev, C. M., Denchev, T. T., de Oliveira, N. T., de Silva, N. I., de Souza, F. A., Dentinger, B., Devadatha, B., Dianese, J. C., Dima, B., Diniz, A. G., Dissanayake, A. J., Dissanayake, L. S., Doğan, H. H., Doilom, M., Dolatabadi, S., Dong, W., Dong, Z. Y., Dos Santos, L. A., Drechsler-Santos, E. R., Du, T. Y., Dubey, M. K., Dutta, A. K., Egidi, E., Elliott, T. F., Elshahed, M. S., Erdoğdu, M., Ertz, D., Etayo, J., Evans, H. C., Fan, X. L., Fan, Y. G., Fedosova, A. G., Fell, J., Fernandes, I., Firmino, A. L., Fiuza, P. O., Flakus, A., Fragoso de Souza, C. A., Frisvad, J. C., Fryar, S. C., Gabaldón, T., Gajanayake, A. J., Galindo, L. J., Gannibal, P. B., García, D., García-Sandoval, S. R., Garrido-Benavent, I., Garzoli, L., Gautam, A. K., Ge, Z. W., Gené, D. J., Gentekaki, E., Ghobad-Nejhad, M., Giachini, A. J., T.b., G., Góes-Neto, A., Gomdola, D., Gomes de Farias, A. R., Gorjón, S. P., Goto, B. T., Granados-Montero, M. M., Griffith, G. W., Groenewald, J. Z., Groenewald, M., Grossart, H. P., Gueidan, C., Gunarathne, A., Gunaseelan, S., Gusmão, L. F. P., Gutierrez, A. C., Guzmán-Dávalos, L., Haelewaters, D., Halling, R., Han, Y. F., Hapuarachchi, K. K., Harder, C. B., Harrington, T. C., Hattori, T., He, M. Q., He, S., He, S. H., Healy, R., Herández-Restrepo, M., Heredia, G., Hodge, K. T., Holgado-Rojas, M., Hongsanan, S., Horak, E., Hosoya, T., Houbraken, J., Huang, S. K., Huanraluek, N., Hur, J. S., Hurdeal, V. G., Hustad, V. P., Iotti, M., Iturriaga, T., Jafar, E., Janik, P., Jayalal, R. G. U., Jayasiri, S. C., Jayawardena, R. S., Jeewon, R., Jerônimo, G. H., Jesus, A. L., Jin, J., Johnston, P. R., Jones, E. B. G., Joshi, Y., Justo, A., Kaishian, P., Kakishima, M., Kaliyaperumal, M., Kang, G. P., Kang, J. C., Karimi, O., Karpov, S. A., Karunarathna, S. C., Kaufmann, M., Kemler, M., Kezo, K., Khyaju, S., Kirchmair, M., Kirk, P. M., Kitaura, M. J., Klawonn, I., Kolarik, M., Kong, A., Kuhar, F., Kukwa, M., Kumar, S., Kušan, I., Lado, C., Larsson, K. H., Latha, K. P. D., Lee, H. B., Leonardi, M., Leontyev, D. L., Lestari, A. S., Li, C. J. Y., Li, D. W., Li, H., Li, H. Y., Li, L., Li, Q. R., Li, W. L., Li, Y., Li, Y. C., Liao, C. F., Liimatainen, K., Lim, Y. W., Lin, C. G., Linaldeddu, B. T., Linde, C. C., Linn, M. M., Liu, F., Liu, J. K., Liu, N. G., Liu, S., Liu, S. L., Liu, X. F., Liu, X. Y., Liu, X. Z., Liu, Z. B., Lu, L., Lu, Y. Z., Luangharn, T., Luangsa-ard, J. J., Lumbsch, H. T., Lumyong, S., Luo, L., Luo, M., Luo, Z. L., Ma, J., Machado, A. R., Madagammana, A. D., Madrid, H., Magurno, F., Magyar, D., Mahadevan, N., Maharachchikumbura, S. S. N., Maimaiti, Y., Malosso, E., Manamgoda, D. S., Manawasinghe, I. S., Mapook, A., Marasinghe, D. S., Mardones, M., Marin-Felix, Y., Márquez, R., Masigol, H., Matočec, N., May, T. W., McKenzie, E. H. C., Meiras-Ottoni, A., Melo, R. F. R., Mendes, A. R. L., Mendieta, S., Meng, Q. F., Menkis, A., Menolli, N. J., Mešić, A., Meza Calvo, J. G., Mikhailov, K. V., Miller, S. L., Moncada, B., Moncalvo, J. M., Monteiro, J. S., Monteiro, M., Mora-Montes, H. M., Moreau, P. A., Mueller, G. M., Mukhopadyay, S., Murugadoss, R., Nagy, L. G., Najafiniya, M., Nanayakkara, C. M., Nascimento, C. C., Nei, Y., Neves, M. A., Neuhauser, S., Niego, A. G. T., Nilsson, R. H., Niskanen, T., Niveiro, N., Noorabadi, M. T., Noordeloos, M. E., Norphanphoun, C., Nuñez Otaño, N. B., O’Donnell, R. P., Oehl, F., Olariaga, I., Orlando, F. P., Pang, K. L., Papp, V., Pawłowska, J., Peintner, U., Pem, D., Pereira, O. L., Perera, R. H., Perez-Moreno, J., Perez-Ortega, S., Péter, G., Phillips, A. J. L., Phonemany, M., Phukhamsakda, C., Phutthacharoen, K., Piepenbring, M., Pires-Zottarelli, C. L. A., Poinar, G., Pošta, A., Prieto, M., Promputtha, I., Quandt, C. A., Radek, R., Rahnama, K., Raj, K. N. A., Rajeshkumar, K. C., Rämä, T., Rambold, G., Ramírez-Cruz, V., Rasconi, S., Rathnayaka, A. R., Raza, M., Ren, G. C., Robledo, G. L., Rodriguez-Flakus, P., Ronikier, A., Rossi, W., Ryberg, M., Ryvarden, L. R., Salvador-Montoya, C. A., Samant, B., Samarakoon, B. C., Samarakoon, M. C., Sánchez-Castro, I., Sánchez-García, M., Sandoval-Denis, M., Santiago, A. L. C. M. A., Santamaria, B., Santos, A. C. S., Sarma, V. V., Savchenko, A., Savchenko, K., Saxena, R. K., Scholler, M., Schoutteten, N., Seifollahi, E., Selbmann, L., Selcuk, F., Senanayake, I. C., Seto, K., Shabashova, T. G., Shen, H. W., Shen, Y. M., Silva-Filho, A. G. S., Simmons, D. R., Singh, R., Sir, E. B., Song, C. G., Souza-Motta C.M. Sruthi, O. P., Stadler, M., Stchigel, A. M., Stemler, J., Stephenson, S. L., Strassert, J. F. H., Su, H. L., Su, L., Suetrong, S., Sulistyo, B., Sun, Y. F., Sun, Y. R., Svantesson, S., Sysouphanthong, P., Takamatsu, S., Tan, T. H., Tanaka, K., Tang, A. M. C., Tang, X., Tanney, J. B., Tavakol, N. M., Taylor, J. E., Taylor, P. W. J., Tedersoo, L., Tennakoon, D. S., Thamodini, G. K., Thines, M., Thiyagaraja, V., Thongklang, N., Tiago, P. V., Tian, Q., Tian, W. H., Tibell, L., Tibell, S., Tibpromma, S., Tkalčec, Z., Tomšovský, M., Toome-Heller, M., Torruella, G., Tsurykau, A., Udayanga, D., Ulukapi, M., Untereiner, W. A., Uzunov, B. A., Valle, L. G., Van Caenegem, W., Van den Wyngaert, S., Van Vooren, N., Velez, P., Verma, R. K., Vieira, L. C., Vieira, W. A. S., Vizzini, A., Walker, A., Walker, A. K., Wanasinghe, D. N., Wang, C. G., Wang, K., Wang, S. X., Wang, X. Y., Wang, Y., Wannasawang, N., Wartchow, F., Wei, D. P., Wei, X. L., White, J. F., Wijayawardene, N. N., Wijesinghe, S. N., Wijesundara, D. S. A., Wisitrassameewong, K., Worthy, F. R., Wu, F., Wu, G., Wu, H. X., Wu, N., Wu, W. P., Wurzbacher, C., Xiao, Y. P., Xiong, Y. R., Xu, L. J., Xu, R., Xu, R. F., Xu, R. J., Xu, T. M., Yakovchenko, L., Yan, J. Y., Yang, H., Yang, J., Yang, Z. L., Yang, Y. H., Yapa, N., Yasanthika, E., Youssef, N. H., Yu, F. M., Yu, Q., Yu, X. D., Yu, Y. X., Yu, Z. F., Yuan, H. S., Yuan, Y., Yurkov, A., Zafari, D., Zamora, J. C., Zare, R., Zeng, M., Zeng, N. K., Zeng, X. Y., Zhang, F., Zhang, H., Zhang, J. F., Zhang, J. Y., Zhang, Q. Y., Zhang, S. N., Zhang, W., Zhang, Y., Zhang, Y. X., Zhao, C. L., Zhao, H., Zhao, Q., Zhao, R. L., Zhou, L. W., Zhou, M., Zhurbenko, M. P., Zin, H. H. & Zucconi, L., 12 Dec 2023, In: Mycosphere. 14, 1, p. 1960-2012 53 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

11 Citations (Scopus)

How, not if, is the question mycologists should be asking about DNA-based typification

Nilsson, R. H., Ryberg, M., Wurzbacher, C., Tedersoo, L., Anslan, S., Põlme, S., Spirin, V., Mikryukov, V., Svantesson, S., Hartmann, M., Lennartsdotter, C., Belford, P., Khomich, M., Retter, A., Corcoll, N., Martinez, D. G., Jansson, T., Ghobad-Nejhad, M., Vu, D. & Sanchez-Garcia, M. & 2 others, Kristiansson, E. & Abarenkov, K., 2023, In: MycoKeys. 96, p. 143-157 15 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

21 Citations (Scopus)

New and Interesting Fungi. 6

Crous, P. W., Akulov, A., Balashov, S., Boers, J., Braun, U., Castillo, J., Delgado, M. A., Denman, S., Erhard, A., Gusella, G., Jurjevi, .., Kruse, J., Malloch, D. W., Osieck, E. R., Polizzi, G., Schumacher, R. K., Slootweg, E., Starink-Willemse, M., van Iperen, A. L. & Verkley, G. J. M. & 1 others, Groenewald, J. Z., Jun 2023, In: Fungal Systematics and Evolution. 11, 1, p. 109-156 48 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

21 Citations (Scopus)

Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov.

Opulente, D. A., Langdon, Q. K., Jarzyna, M., Buh, K. V., Haase, M. A. B., Groenewald, M. & Hittinger, C. T., Dec 2023, In: Yeast. 40, 12, p. 608-615 8 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

2 Citations (Scopus)

The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

Abarenkov, K., Nilsson, R. H., Larsson, K.-H., Taylor, A. F. S., May, T. W., Frøslev, T. G., Pawlowska, J., Lindahl, B., Põldmaa, K., Truong, C., Vu, D., Hosoya, T., Niskanen, T., Piirmann, T., Ivanov, F., Zirk, A., Peterson, M., Cheeke, T. E., Ishigami, Y. & Jansson, A. T. & 12 others, Jeppesen, T. S., Kristiansson, E., Mikryukov, V., Miller, J. T., Oono, R., Ossandon, F. J., Paupério, J., Saar, I., Schigel, D., Suija, A., Tedersoo, L. & Kõljalg, U., 11 Nov 2023, In: Nucleic Acids Research.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

200 Citations (Scopus)

Unveiling Fungal Community Structure along Different Levels of Anthropic Disturbance in a South American Subtropical Lagoon

Pagani, D. M., Ventura, S. P. R., Vu, D., Mendes-Pereira, T., Ribeiro Tomé, L. M., Carvalho, D. S. D., Costa-Rezende, D. H., Kato, R. B., García, G. J. Y., Geml, J., Robert, V., They, N. H., Brenig, B., Azevedo, V., Scroferneker, M. L., Valente, P. & Góes-Neto, A., Sept 2023, In: Journal of Fungi. 9, 9, 890.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

2 Citations (Scopus)

2022

Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum

Li, Y., Liu, H., Steenwyk, J. L., LaBella, A. L., Harrison, M. C., Groenewald, M., Zhou, X., Shen, X. X., Zhao, T., Hittinger, C. T. & Rokas, A., 19 Dec 2022, In: Current Biology. 32, 24, p. 5335-5343.e4

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

10 Citations (Scopus)

Description of Crinitomyces reliqui gen. nov., sp. nov. and Reassignment of Trichosporiella flavificans and Candida ghanaensis to the Genus Crinitomyces

Sakpuntoon, V., Péter, G., Groenewald, M., Dlauchy, D., Limtong, S. & Srisuk, N., Feb 2022, In: Journal of Fungi. 8, 3, 224.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

6 Citations (Scopus)

Dnabarcoder: An open‐source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification

Vu, D., Nilsson, R. H. & Verkley, G. J. M., 20 Jun 2022, In: Molecular Ecology Resources.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

10 Citations (Scopus)

Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome

van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M.H.-V., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J. & van den Wijngaard, R. M., 30 Mar 2022, In: Scientific Reports. 12, 1, p. 5391

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

12 Citations (Scopus)

Isolation and characterization of bioethanol producing wild yeasts from bio-wastes and co-products of sugar factories

Hawaz, E., Tafesse, M., Tesfaye, A., Beyene, D., Kiros, S., Kebede, G., Boekhout, T., Theelen, B., Groenewald, M., Degefe, A., Degu, S., Admas, A. & Muleta, D., 2022, In: Annals of Microbiology. 72, 1

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

14 Citations (Scopus)

Isolation and characterization of Vibrio owensii from Palk Bay and its infection study against post larvae of Litopenaeus vannamei

Thillaichidambaram, M., Narayanan, K., Selvaraj, S., Sundararaju, S., Chockalingam Muthiah, R. & Figge, M., Nov 2022, In: Microbial Pathogenesis. 172, 105751, 105751.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

4 Citations (Scopus)

Proposal of Two New Combinations, Twenty New Species, Four New Genera, One New Family, and One New Order for the Anamorphic Basidiomycetous Yeast Species in Ustilaginomycotina

Li, Y. Y., Wang, M. M., Groenewald, M., Li, A. H., Guo, Y. T., Wu, F., Zhang, B. Q., Tanaka, E., Wang, Q. M., Bai, F. Y. & Begerow, D., 11 Feb 2022, In: Frontiers in Microbiology. 12, 777338.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

10 Citations (Scopus)

2021

A genome-scale phylogeny of the kingdom Fungi

Li, Y., Steenwyk, J. L., Chang, Y., Wang, Y., James, T. Y., Stajich, J. E., Spatafora, J. W., Groenewald, M., Dunn, C. W., Hittinger, C. T., Shen, X.-X. & Rokas, A., 26 Apr 2021, In: Current Biology. 31, 8, p. 1653-1665.e5

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

198 Citations (Scopus)

Author Correction: Fungal taxonomy and sequence-based nomenclature

Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W. & Nilsson, H. R. & 8 others, Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N. & Schoch, C. L., 27 May 2021, In: Nature Microbiology.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

2 Citations (Scopus)

Draft Genome Sequences of Two Cadophora Strains Isolated from Water and a Nonalcoholic Beverage Ingredient Auteurs

Stefanovic, E. (Corresponding author), Scully, C., Roader, J., Murphy, F., Houbraken, J. & Vu, D., 01 Jul 2021, In: Genome Announcements. 10, 26

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Fungal Planet description sheets: 1182-1283

Crous, P. W., Cowan, D. A., Maggs‐Kölling, G., Yilmaz, N., Thangavel, R., Wingfield, M. J., Noordeloos, M. E., Dima, B., Brandrud, T. E., Jansen, G. M., Morozova, O. V., Vila, J., Shivas, R. G., Tan, Y. P., Bishop‐Hurley, S., Lacey, E., Marney, T. S., Larsson, E., Le Floch, G. & Lombard, L. & 126 others, Nodet, P., Hubka, V., Alvarado, P., Berraf‐Tebbal, A., Reyes, J. D., Delgado, G., Eichmeier, A., Jordal, J. B., Kachalkin, A. V., Kubátová, A., Maciá‐Vicente, J. G., Malysheva, E. F., Papp, V., Rajeshkumar, K. C., Sharma, A., Spetik, M., Szabóová, D., Tomashevskaya, M. A., Abad, J. A., Abad, Z. G., Alexandrova, A. V., Anand, G., Arenas, F., Ashtekar, N., Balashov, S., Bañares, Á., Baroncelli, R., Bera, I., Biketova, A. Y., Blomquist, C. L., Boekhout, T., Boertmann, D., Bulyonkova, T. M., Burgess, T. I., Carnegie, A. J., Cobo‐Diaz, J. F., Corriol, G., Cunnington, J. H., da Cruz, M. O., Damm, U., Davoodian, N., de A. Santiago, A. L. C. M., Dearnaley, J., de Freitas, L. W. S., Dhileepan, K., Dimitrov, R., Di Piazza, S., Fatima, S., Fuljer, F., Galera, H., Ghosh, A., Giraldo, A., Glushakova, A. M., Gorczak, M., Gouliamova, D. E., Gramaje, D., Groenewald, M., Gunsch, C. K., Gutiérrez, A., Holdom, D., Houbraken, J., Ismailov, A. B., Istel, Ł., Iturriaga, T., Jeppson, M., Jurjević, Ž., Kalinina, L. B., Kapitonov, V. I., Kautmanova, I., Khalid, A. N., Kiran, M., Kiss, L., Kovács, Á., Kurose, D., Kusan, I., Lad, S., Læssøe, T., Lee, H. B., Luangsa‐ard, J. J., Lynch, M., Mahamedi, A. E., Malysheva, V. F., Mateos, A., Matočec, N., Mešić, A., Miller, A. N., Mongkolsamrit, S., Moreno, G., Morte, A., Mostowfizadeh‐Ghalamfarsa, R., Naseer, A., Navarro‐Ródenas, A., Nguyen, T. T. T., Noisripoom, W., Ntandu, J. E., Nuytinck, J., Ostrý, V., Pankratov, T. A., Pawłowska, J., Pecenka, J., Pham, T. H. G., Polhorský, A., Posta, A., Raudabaugh, D. B., Reschke, K., Rodríguez, A., Romero, M., Rooney‐Latham, S., Roux, J., Sandoval‐Denis, M., Smith, M. T., Steinrucken, T. V., Svetasheva, T. Y., Tkalčec, Z., van der Linde, E. J., v.d. Vegte, M., Vauras, J., Verbeken, A., Visagie, C. M., Vitelli, J. S., Volobuev, S. V., Weill, A., Wrzosek, M., Zmitrovich, I. V., Zvyagina, E. A. & Groenewald, J. Z., Jun 2021, In: Persoonia. 46, p. 313-528 216 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

145 Citations (Scopus)

Fungal Planet description sheets: 1284-1382

Crous, P. W., Osieck, E. R., Jurjević, Ž., Boers, J., van Iperen, A. L., Starink-Willemse, M., Dima, B., Balashov, S., Bulgakov, T. S., Johnston, P. R., Morozova, O. V., Pinruan, U., Sommai, S., Alvarado, P., Decock, C. A., Lebel, T., McMullan-Fisher, S., Moreno, G., Shivas, R. G. & Zhao, L. & 161 others, Abdollahzadeh, J., Abrinbana, M., Ageev, D. V., Akhmetova, G., Alexandrova, A. V., Altés, A., Amaral, A. G. G., Angelini, C., Antonín, V., Arenas, F., Asselman, P., Badali, F., Baghela, A., Bañares, A., Barreto, R. W., Baseia, I. G., Bellanger, J.-M., Berraf-Tebbal, A., Biketova, A. Y., Bukharova, N. V., Burgess, T. I., Cabero, J., Câmara, M. P. S., Cano-Lira, J. F., Ceryngier, P., and Chávez, R., Cowan, D. A., de Lima, A. F., Oliveira, R. L., Denman, S., Dang, Q. N., Dovana, F., Duarte, I. G., Eichmeier, A., Erhard, A., Esteve-Raventós, F., Fellin, A., Ferisin, G., Ferreira, R. J., Ferrer, A., Finy, P., Gaya, E., Geering, A. D. W., Gil-Durán, C., Glässnerová, K., Glushakova, A. M., Gramaje, D., Guard, F. E., Guarnizo, A. L., Haelewaters, D., Halling, R. E., Hill, R., Hirooka, Y., Hubka, V., Iliushin, V. A., Ivanova, D. D., Ivanushkina, N. E., Jangsantear, P., Justo, A., Kachalkin, A. V., Kato, S., Khamsuntorn, P., Kirtsideli, I. Y., Knapp, D. G., Kochkina, G. A., Koukol, O., Kovács, G. M., Kruse, J., Kumar, T. K. A., Kušan, I., Læssøe, T., Larsson, E., Lebeuf, R., Levicán, G., Loizides, M., Marinho, P., Luangsa-ard, J. J., Lukina, E. G., Magaña-Dueñas, V., Maggs-Kölling, G., Malysheva, E. F., Malysheva, V. F., Martín, B., Martín, M. P., Matočec, N., McTaggart, A. R., Mehrabi-Koushki, M., Mešić, A., Miller, A. N., Mironova, P., Moreau, P.-A., Morte, A., Müller, K., Nagy, L. G., Nanu, S., Navarro-Ródenas, A., Nel, W. J., Nguyen, T. H., Nóbrega, T. F., Noordeloos, M. E., Olariaga, I., Overton, B. E., Ozerskaya, A. M., Palani, P., Pancorbo, F., Papp, V., Pawłowska, J., Pham, T. Q., Phosri, C., Popov, E. S., Portugal, A., Pošta, A., Reschke, K., Reul, M., Ricci, G. M., Rodríguez, A., Romanowski, J., Ruchikachorn, N., Saar, I., Safi, A., Sakolrak, B., Salzmann, F., Sandoval-Denis, M., Sangwichein, E., Sanhueza, L., Sato, T., Sastoque, A., Senn-Irlet, B., Shibata, A., Siepe, K., Somrithipol, S., Spetik, M., Sridhar, P., Stchigel, A. M., Stuskova, K., Suwannasai, N., Tan, Y. P., Thangavel, R., Tiago, I., Tiwari, S., Tkalčec, Z., Tomashevskaya, M. A., Tonegawa, C., Tran, H. X., Tran, N. T., Trovão, J., Trubitsyn, V. E., Van Wyk, J., Vieira, W. A. S., Vila, J., Visagie, C. M., Vizzini, A., Volobuev, S. V., Vu, D. T., Wangsawat, N., Yaguchi, T., Ercole, E., Ferreira, B. W., de Souza, A. P., Vieira, B. S. & Groenewald, J. Z., 31 Dec 2021, In: Persoonia. 47, p. 178-374 197 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

139 Citations (Scopus)

Fusarium: more than a node or a foot-shaped basal cell

Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H.-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M. & Yilmaz, N. & 107 others, Frisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P. M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Amor, A. B. H., Bezerra, J. D. P., Boekhout, T., Câmara, M. P. S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., Vries, R. P. D., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S. N., Marin-Felix, Y., Kemkuignou, B. M., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J. L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C. S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W. J., Tiago, P. V., Váczy, K. Z., Wiele, N. V. D., Merwe, N. A. V. D., Verkley, G. J. M., Vieira, W. A. S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L. & Thines, M., Apr 2021, In: Studies in Mycology. 98, 184 p., 100116.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

268 Citations (Scopus)

Hanseniaspora smithiae sp. nov., a novel apiculate yeast species from Patagonian Forests that lacks the typical genomic domestication signatures for fermentative environments

Cadez, N., Bellora, N., Ulloa, R., Tome, M., Petkovic, H., Groenewald, M., Hittinger, C. T. & Libkind, D., 21 Jul 2021, In: Frontiers in Microbiology. 12, 11 p., 679894.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

13 Citations (Scopus)

Intraspecific nucleotide divergence in Saccharomycodes ludwigii, and proposal of Saccharomycodes pseudoludwigii sp. nov, a new apiculate yeast isolated from China

Wang, M.-M., Groenewald, M., Wu, F., Guo, Y.-T., Wang, Q.-M. & Boekhout, T., May 2021, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 114, 5, p. 553-559

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

1 Citation (Scopus)

Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil

de Jong, A. W., Francisco, E. C., de Almeida, J. N., Brandão, I. B., Pereira, F. M., Dias, P. H. P., de Miranda Costa, M. M., de Souza Jordão, R. T., Vu, D., Colombo, A. L. & Hagen, F., 20 Oct 2021, In: Mycopathologia.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

5 Citations (Scopus)

Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes

Yurkov, A., Alves, A., Bai, F.-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D. & Liu, X. & 16 others, Maier, T., Meyer, W., Péter, G., Piątek, M., Robert, V., Rosa, C. A., Sampaio, J. P., Sipiczki, M., Stadler, M., Sugita, T., Sugiyama, J., Takagi, H., Takashima, M., Turchetti, B., Wang, Q.-M. & Boekhout, T., 13 Jul 2021, In: IMA Fungus. 12, 1, p. 18

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

18 Citations (Scopus)

Westerdijk Fungal Biodiversity Institute - Collection

Research output

Search results