Westerdijk Fungal Biodiversity Institute - Fungal Natural Products

Research output

Research output per year 2018 2019 2020 2021 2022 2022

• 19 Article
• 5 Poster
• 2 Chapter
• 2 Book/Film/Article review
• 3 More
  • 2 Other contribution
  • 1 Online paper

Research output per year

Research output per year

Search results

• 2022

  Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone

  Courtial, J., Helesbeux, J. J., Oudart, H., Aligon, S., Bahut, M., Hamon, B., N’Guyen, G., Pigné, S., Hussain, A. G., Pascouau, C., Bataillé-Simoneau, N., Collemare, J., Berruyer, R. & Poupard, P., Dec 2022, In: Scientific Reports. 12, 1, 8155.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Polyketides 100%
  • Alternaria 96%
  • Lactones 65%
  • Secondary Metabolism 52%
  • Daucus carota 49%
  1 Citation (Scopus)

• Evolutionary relationships of adenylation domains in fungi

  Noriler, S., Navarro-Muñoz, J. C., Glienke, C. & Collemare, J., Nov 2022, In: Genomics. 114, 6, 110525.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • non-ribosomal peptide synthase 100%
  • Fungi 56%
  • Oxidoreductases 32%
  • Enzymes 29%
  • Coenzyme A 22%

• Hybridizations Between formae speciales of Venturia inaequalis Pave the Way for a New Biocontrol Strategy to Manage Fungal Plant Pathogens

  Caffier, V., Shiller, J., Bellanger, M. N., Collemare, J., Expert, P., Gladieux, P., Pascouau, C., Sannier, M. & Le Cam, B., Jul 2022, In: Phytopathology. 112, 7, p. 1401-1405 5 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Pyracantha 100%
  • Venturia inaequalis 77%
  • Malus 73%
  • plant pathogens 51%
  • biological control 46%

• The histone code of the fungal genus Aspergillus uncovered by evolutionary and proteomic analyses

  Zhang, X., Noberini, R., Bonaldi, T., Collemare, J. & Seidl, M. F., 2022, In: Microbial genomics. 8, 9, 000856.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Histone Code 100%
  • Aspergillus 99%
  • Proteomics 80%
  • Chromatin 77%
  • Fungi 39%
  1 Citation (Scopus)
• 2021

  Fusarium: more than a node or a foot-shaped basal cell

  Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., & 107 othersFrisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P. M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Amor, A. B. H., Bezerra, J. D. P., Boekhout, T., Câmara, M. P. S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., Vries, R. P. D., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S. N., Marin-Felix, Y., Kemkuignou, B. M., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J. L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C. S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W. J., Tiago, P. V., Váczy, K. Z., Wiele, N. V. D., Merwe, N. A. V. D., Verkley, G. J. M., Vieira, W. A. S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L. & Thines, M., Apr 2021, In: Studies in Mycology. 98, 184 p., 100116.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fusarium 100%
  • Foot 64%
  • Nectriaceae 51%
  • Gibberella 33%
  • cells 24%
  105 Citations (Scopus)

• Secondary metabolite biosynthetic diversity in the fungal family Hypoxylaceae and Xylaria hypoxylon

  Kuhnert, E., Navarro-Muñoz, J. C., Becker, K., Stadler, M., Collemare, J. & Cox, R. J., Jun 2021, In: Studies in Mycology. 99, 100118.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Hypoxylaceae 100%
  • Hypoxylon 74%
  • Xylaria 72%
  • Biosynthetic Pathways 46%
  • Fungi 43%
  17 Citations (Scopus)
• 2020

  Evolutionary Histories of Type III Polyketide Synthases in Fungi

  Collemare, J. & Navarro-Munoz, J. C., 21 Jan 2020, In: Frontiers in Microbiology.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Evolutionary Histories of Type III Polyketide Synthases in Fungi

  Navarro-Muñoz, J. C. & Collemare, J., 21 Jan 2020, In: Frontiers in Microbiology. 10, 3018.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • flavanone synthetase 100%
  • Fungi 48%
  • Biosynthetic Pathways 29%
  • Multigene Family 19%
  • Gene Duplication 15%
  22 Citations (Scopus)

• Molecules from nature: Reconciling biodiversity conservation and global healthcare imperatives for sustainable use of medicinal plants and fungi

  Howes, MJ. R., Quave, C. L., Collemare, J., Tatsis, E. C., Twilley, D., Lulekal, E., Farlow, A., Li, L., Cazar, ME., Leaman, D. J., Prescott, T. A. K., Milliken, W., Martin, C., De Canha, M. N., Lall, N., Qin, H., Walker, B. E., Vásquez‐Londoño, C., Allkin, B., Rivers, M., & 8 othersSimmonds, M. S. J., Bell, E., Battison, A., Felix, J., Forest, F., Leon, C., Williams, C. & Nic Lughadha, E., Sept 2020, In: PLANTS, PEOPLE, PLANET. 2, 5, p. 463-481 19 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • plant and fungus 100%
  • medicinal fungi 91%
  • medicinal plant 89%
  • biodiversity conservation 80%
  • sustainable use 75%
  65 Citations (Scopus)

• Selecting for useful properties of plants and fungi – Novel approaches, opportunities, and challenges

  Kersey, P. J., Collemare, J., Cockel, C., Das, D., Dulloo, E. M., Kelly, L. J., Lettice, E., Malécot, V., Maxted, N., Metheringham, C., Thormann, I. & Leitch, I. J., Sept 2020, In: PLANTS, PEOPLE, PLANET. 2, 5, p. 409-420 12 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • plant and fungus 100%
  • genetic diversity 56%
  • genetic variation 42%
  • fungi 40%
  • new variety 38%
  13 Citations (Scopus)

• Transcriptome and proteome analyses of proteases in biotroph fungal pathogen Cladosporium fulvum

  Karimi Jashni, M., van der Burgt, A., Battaglia, E., Mehrabi, R., Collemare, J. & de Wit, P. J. G. M., 01 May 2020, In: Journal of Plant Pathology. 102, 2, p. 377-386 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Passalora fulva 100%
  • proteome 64%
  • transcriptome 59%
  • proteinases 50%
  • pathogens 39%
  12 Citations (Scopus)

• Untapped resources for medical research

  Pérez-Escobar, O. A., Richardso, J. E., Howes, M. J. R., Lucas, E., De Róman, N. Á., Collemare, J., Graha, I. A., Gratzfeld, J., Kerse, P. J., Leitc, I. J., Paton, A., Hollingswort, P. M. & Antonelli, A., 14 Aug 2020, In: Science. 369, 6505, p. 781-782 2 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  5 Citations (Scopus)
• 2019

  Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: is the picture complete?

  Collemare, J. & Seidl, M. F., 20 Jun 2019, In: FEMS Microbiology Reviews.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  43 Citations (Scopus)

• Draft Genome Sequence of the Wood-Staining Ascomycete Chlorociboria aeruginascens DSM 107184

  Büttner, E., Liers, C., Gebauer, A. M., Collemare, J., Navarro-Muñoz, J. C., Hofrichter, M. & Kellner, H., 25 Apr 2019, In: Microbiology Resource Announcements. 8, 17

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • xylindein 100%
  • Naphthoquinones 60%
  • Ascomycota 58%
  • Fungi 34%
  • Genome 26%
  3 Citations (Scopus)

• MIBiG 2.0: a repository for biosynthetic gene clusters of known function

  Kautsar, S. A., Blin, K., Shaw, S., Navarro-Muñoz, J. C., Terlouw, B. R., van der Hooft, J. J. J., van Santen, J. A., Tracanna, V., Suarez Duran, H. G., Pascal Andreu, V., Selem-Mojica, N., Alanjary, M., Robinson, S. L., Lund, G., Epstein, S. C., Sisto, A. C., Charkoudian, L. K., Collemare, J., Linington, R. G., Weber, T., & 1 othersMedema, M. H., 15 Oct 2019, In: Nucleic Acids Research.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Multigene Family 100%
  • Chemical Databases 20%
  • Data Curation 19%
  • Microbial Genome 19%
  • Explosions 16%
  355 Citations (Scopus)

• Nonproteinaceous effectors: the terra incognita of plant-fungal interactions.

  Collemare, J., O'Connell, R. J. & Lebrun, M-H., 09 Mar 2019, In: New Phytologist.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  49 Citations (Scopus)

• Population genome sequencing of the scab fungal species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata

  Le Cam, B., Sargent, D., Gouzy, J., Amselem, J., Bellanger, M. N., Bouchez, O., Brown, S., Caffier, V., De Gracia, M., Debuchy, R., Duvaux, L., Payen, T., Sannier, M., Shiller, J., Collemare, J. & Lemaire, C., 01 Aug 2019, In: G3: Genes, Genomes, Genetics. 9, 8, p. 2405-2414 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • DNA Transposable Elements 100%
  • AT Rich Sequence 79%
  • Genome 52%
  • Sorbus 49%
  • Single Nucleotide Polymorphism 43%
  24 Citations (Scopus)

• The High-Quality Complete Genome Sequence of the Opportunistic Fungal Pathogen Candida vulturna CBS 14366T

  Navarro-Muñoz, J. C., de Jong, A. W., Gerrits van den Ende, B., Haas, P-J., Then, E. R., Mohd Tap, R., Collemare, J. & Hagen, F., Dec 2019, In: Mycopathologia. 184, 6, p. 731-734 4 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida 100%
  • Genome 62%
  • pathogens 54%
  • genome 50%
  10 Citations (Scopus)
• 2018

  Assignment of a dubious gene cluster to melanin biosynthesis in the tomato fungal pathogen Cladosporium fulvum

  Collemare, J., 31 Dec 2018, In: PLoS One.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  15 Citations (Scopus)