Research output per year
Research output per year
- 1 - 50 out of 228 results
Search results
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2024
Aspergillus hubkae, a Novel Species Isolated from a Patient with Probable Invasive Pulmonary Aspergillosis
Zhou, Y. B., Rezaei-Matehkolaei, A., Meijer, M., Kraak, B., Gerrits van den Ende, B., Hagen, F., Afzalzadeh, S., Kiasat, N., Takesh, A., Hoseinnejad, A. & Houbraken, J., 11 May 2024, In: Mycopathologia. 189, 3, p. 44Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Clinical response to prednisone in a severe case of infant-juvenile paracoccidioidomycosis
Guevara, A., Siqueira, N. P., de Sousa, R. P., Dos Santos, T. B., Assis, S. B., de Camargo, Z. P., Rodrigues, A. M., Hagen, F. & Hahn, R. C., 18 Jun 2024, (E-pub ahead of print) In: Revista Iberoamericana de Micologia.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Complete Genome Sequence of the Itraconazole Decreased Susceptible Madurella fahalii Type-Strain CBS 129176
Konings, M., Gerrits van den Ende, B., Raats, M. W. J., Fahal, A. H., van de Sande, W. W. J. & Hagen, F., 17 Jan 2024, In: Mycopathologia. 189, 1, p. 6Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access1 Citation (Scopus) -
Fungal pathogens exposed – genomic and phenotypic insights into <em>Candida auris</em> and its relatives of the <em>Candida haemulonii</em> species complex
de Jong, A. W., Boden, S., Zandijk, A., Kortsinoglou, A. M., Gerrits van den Ende, B., Francisco, E. C., Nefeli, P. K., Kouvelis, V. N., Zhou, M. & Hagen, F., 01 Jan 2024, In: bioRxiv. p. 2024.05.16.594571Research output: Contribution to journal/periodical › Article › Scientific
Open Access -
Fusarioid keratitis and other superficial infections: A 10-years prospective study from Northeastern Brazil
Ferreira da Cunha Neto, J., da Silva Rocha, W. P., Makris, G., Sandoval-Denis, M., Hagen, F., Crous, P. W. & Chaves, G. M., Jun 2024, In: PLoS Neglected Tropical Diseases. 18, 6, p. e0012247Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Improving disseminated histoplasmosis diagnosis in HIV/AIDS patients in Suriname: The role of a urine lateral flow assay
Woittiez, L., Vestjens, S., Mawie, T., IJzerman, E., Haas, P-J., Hagen, F., Roosblad, J., Leopold, S., van Schagen, M. D., van Vugt, M. & Vreden, S., Jun 2024, In: PLoS Neglected Tropical Diseases. 18, 6, p. e0012272Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion
Kidd, S. E., Hagen, F., Halliday, C. L., Abdolrasouli, A., Boekhout, T., Crous, P. W., Ellis, D. H., Elvy, J., Forrest, G. N., Groenewald, M., Hahn, R. C., Houbraken, J., Rodrigues, A. M., Scott, J., Sorrell, T. C., Summerbell, R. C., Tsui, C. K. M., Yurkov, A. & Chen, S. C-A., 05 Mar 2024, (E-pub ahead of print) In: Journal of Clinical Microbiology. p. e0157023Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
New and Interesting Fungi. 7.
Visagie, C. M., Yilmaz, N., Allison, J. D., Barreto, R. W., Boekhout, T., Boers, J., Delgado, M. A., Dewing, C., Fitza, K. N. E., Furtado, E. C. A., Gaya, E., Hill, R., Hobden, A., Hu, D. M., Hülsewig, T., Khonsanit, A., Luangsa-ard, J. J., Mthembu, A., Pereira, C. M., Price, J-L., & 11 others, Jun 2024, In: Fungal Systematics and Evolution. 13, p. 441-494 54 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Pulmonary cryptococcoma in a Friesian horse in the Netherlands
van Eijk, N. M. H. A., Houben, R. M. A. C., Tellegen, A. R., Hagen, F. & Ankringa, N., 2024, In: Veterinary Record Case Reports. 12, 2, p. e829Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Susceptibility Testing of Environmental and Clinical Aspergillus sydowii Demonstrates Potent Activity of Various Antifungals
Spruijtenburg, B., Rezusta, A., Houbraken, J., Hagen, F., de Groot, T., Meis, J. F. & Meijer, E. F. J., 03 Jul 2024, In: Mycopathologia. 189, 4, p. 61Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
2023
A multicentre external quality assessment: A first step to standardise PCR protocols for the diagnosis of histoplasmosis and coccidioidomycosis
Wilmes, D., Hagen, F., Verissimo, C., Alanio, A., Rickerts, V. & Buitrago, M. J., 11 May 2023, (E-pub ahead of print) In: Mycoses.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
A surprising finding: The curious case of a tongue lesion misdiagnosed as paracoccidioidomycosis
Gerrits van den Ende, B., Rodrigues, A. M., Hahn, R. C. & Hagen, F., 27 Mar 2023, In: Revista Iberoamericana de Micologia. 40, 1, p. 10-14 5 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex
de Jong, A. W., Al-Obaid, K., Mohd Tap, R., Gerrits van den Ende, B., Groenewald, M., Joseph, L., Ahmad, S. & Hagen, F., 03 Feb 2023, In: Medical Mycology. 61, 2Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access8 Citations (Scopus) -
Candida parapsilosis isolates carrying mutations outside FKS1 hotspot regions confer high echinocandin tolerance and facilitate the development of echinocandin resistance
Daneshnia, F., Arastehfar, A., Lombardi, L., Binder, U., Scheler, J., Vahedi Shahandashti, R., Hagen, F., Lass-Flörl, C., Mansour, M. K., Butler, G. & Perlin, D. S., Jul 2023, In: International Journal of Antimicrobial Agents. 62, 1, p. 106831Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access6 Citations (Scopus) -
Comparing genomic variant identification protocols for Candida auris
Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d'Enfert, C., Engelthaler, D. M., Eyre, D. W., Fisher, M. C., & 6 others, 13 Apr 2023, In: Microbial genomics. 9, 4Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access4 Citations (Scopus) -
Development of a Multiplex qPCR Assay for Fast Detection and Differentiation of Paracoccidioidomycosis Agents
Pinheiro, B. G., Pôssa, A. P., Ricci, G., Nishikaku, A. S., Hagen, F., Hahn, R. C., Camargo, Z. P. D. & Rodrigues, A. M., 15 Mar 2023, In: Journal of Fungi.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access1 Citation (Scopus) -
High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging Sporothrix Species
Losada, L. C. D. M. L., Monteiro, R. C., Carvalho, J. A. D., Hagen, F., Fisher, M. C., Spruijtenburg, B., Meis, J. F., Groot, T. D., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., Camargo, Z. P. D. & Rodrigues, A. M., 14 Mar 2023, In: Journal of Fungi.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access10 Citations (Scopus) -
Identification of Clinical Trichosporon asteroides Strains by MALDI-TOF Mass Spectrometry: Evaluation of the Bruker Daltonics Commercial System and an In-House Developed Library
Jun 2023, In: Mycopathologia. 188, 3, p. 243-249 7 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
3 Citations (Scopus) -
In vitro activity of isavuconazole against clinically relevant Trichosporon species: a comparative evaluation of EUCAST broth microdilution and MIC Test Strip methods
02 Mar 2023, In: Journal of Antimicrobial Chemotherapy. 78, 3, p. 817-822 6 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
1 Citation (Scopus) -
Misidentification of Talaromyces marneffei in wild animal and human nasal samples in Portugal - Red pigment production is not unique
Le, T., Houbraken, J. & Hagen, F., 01 Oct 2023, In: Research in Veterinary Science. 164, p. 105035Research output: Contribution to journal/periodical › Article › Scientific › peer-review
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Molecular epidemiology of clinical filamentous fungi in Qatar beyond Aspergillus and Fusarium with notes on the rare species
Salah, H., Houbraken, J., Boekhout, T., Almaslamani, M. & Taj-Aldeen, S. J., 01 Jan 2023, In: Medical Mycology. 61, 1, myac098.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access1 Citation (Scopus) -
Reply to "Re: Fungal Nomenclature: Managing Change Is the Name of the Game"
Kidd, S. E., Abdolrasouli, A. & Hagen, F., Aug 2023, In: Open Forum Infectious Diseases. 10, 8, p. ofad394Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Whole-genome sequencing confirms a persistent candidaemia clonal outbreak due to multidrug-resistant Candida parapsilosis
Daneshnia, F., Hilmioğlu-Polat, S., Ilkit, M., Fuentes, D., Lombardi, L., Binder, U., Scheler, J., Hagen, F., Mansour, M. K., Butler, G., Lass-Flörl, C., Gabaldon, T. & Arastehfar, A., 01 Jun 2023, In: Journal of Antimicrobial Chemotherapy. 78, 6, p. 1488-1494 7 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access7 Citations (Scopus) -
2022
Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples
Nourrisson, C., Moniot, M., Lavergne, R-A., Robert, E., Bonnin, V., Hagen, F., Grenouillet, F., Cafarchia, C., Butler, G., Cassaing, S., Sabou, M., Le Pape, P., Poirier, P. & Morio, F., 06 Oct 2022, (E-pub ahead of print) In: Clinical Microbiology and Infection.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
6 Citations (Scopus) -
A Spotlight on Sporothrix and Sporotrichosis
Rodrigues, A. M., Hagen, F. & de Camargo, Z. P., Aug 2022, In: Mycopathologia. 187, 4, p. 407-411 5 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
18 Citations (Scopus) -
Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis
Hare, R. K., Arastehfar, A., Rosendahl, S., Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, M. C., 12 Feb 2022, In: Journal of Fungi. 8, 2Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access7 Citations (Scopus) -
Communities of culturable yeasts and yeast-like fungi in oligotrophic hypersaline coastal waters of the Arabian Gulf surrounding Qatar
Fotedar, R., Chatting, M., Kolecka, A., Zeyara, A., Al Malki, A., Kaul, R., Bukhari, S. J., Moaiti, M. A., Febbo, E. J., Boekhout, T. & Fell, J. W., May 2022, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 115, 5, p. 609-633 25 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access8 Citations (Scopus) -
Cutaneous disseminated sporotrichosis in immunocompetent patient: Case report and literature review
Queiroz-Telles, F., Cognialli, R. C., Salvador, G. L., Moreira, G. A., Herkert, P. F. & Hagen, F., 11 May 2022, In: Medical Mycology Case Reports. 36, p. 31-34 4 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access8 Citations (Scopus) -
De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565
Boden, S., Morio, F., Zhou, M., Gerrits van den Ende, B. & Hagen, F., 10 May 2022, In: Mycopathologia.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access2 Citations (Scopus) -
Epidemiology and Antifungal Susceptibility of Candida Species Isolated from 10 Tertiary Care Hospitals in Iran
Badiee, P., Boekhout, T., Haddadi, P., Mohammadi, R., Ghadimi-Moghadam, A., Soltani, J., Zarei Mahmoudabadi, A., Ayatollahi Mousavi, S. A., Najafzadeh, M. J., Diba, K., Salimi-Khorashad, A. R., Amin Shahidi, M., Ghasemi, F. & Jafarian, H., 21 Dec 2022, In: Microbiology spectrum. 10, 6, p. e0245322Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access5 Citations (Scopus) -
Evolutionary engineering to improve Wickerhamomyces subpelliculosus and Kazachstania gamospora for baking
Semumu, T., Gamero, A., Boekhout, T. & Zhou, N., 28 Jan 2022, In: Mircen Journal of Applied Microbiology and Biotechnology. 38, 3, p. 48Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Fecal Filobasidium Is Associated with Clinical Remission and Endoscopic Response following Fecal Microbiota Transplantation in Mild-to-Moderate Ulcerative Colitis
van Thiel, I. A. M., Rahman, S., Hakvoort, T. B. M., Davids, M., Verseijden, C., van Hamersveld, P. H. P., Bénard, M. V., Lodders, M. H., Boekhout, T., van den Wijngaard, R. M., Heinsbroek, S. E. M., Ponsioen, C. Y. & de Jonge, W. J., 29 Mar 2022, In: Microorganisms. 10, 4Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access9 Citations (Scopus) -
Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome
van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J. & van den Wijngaard, R. M., 30 Mar 2022, In: Scientific Reports. 12, 1, p. 5391Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access6 Citations (Scopus) -
Isolation and characterization of bioethanol producing wild yeasts from bio-wastes and co-products of sugar factories
Hawaz, E., Tafesse, M., Tesfaye, A., Beyene, D., Kiros, S., Kebede, G., Boekhout, T., Theelen, B., Groenewald, M., Degefe, A., Degu, S., Admas, A. & Muleta, D., 2022, In: Annals of Microbiology. 72, 1Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access10 Citations (Scopus) -
JMM Profile: Trichosporon yeasts: from superficial pathogen to threat for haematological-neutropenic patients
Francisco, E. C. & Hagen, F., Dec 2022, In: Journal of Medical Microbiology. 71, 12Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Molecular epidemiology and clinical-laboratory aspects of chromoblastomycosis in Mato Grosso, Brazil
Guevara, A., Nery, A. F., de Souza Carvalho Melhem, M., Bonfietti, L., Rodrigues, A. M., Hagen, F., de Carvalho, J. A., de Camargo, Z. P., Jacomel F de Souza Lima, B., Vicente, V. A. & Hahn, R. C., Dec 2022, In: Mycoses.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access6 Citations (Scopus) -
Molecular Tools for Candida auris Identification and Typing
de Jong, A. W., Gerrits van den Ende, B. & Hagen, F., 2022, In: Methods in molecular biology (Clifton, N.J.). 2517, p. 33-41 9 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
2 Citations (Scopus) -
Mucormycosis in Children With Hematologic Malignancies: A Case Series and Review of the Literature
Loeffen, Y. G. T., Scharloo, F., Goemans, B. F., Heitink-Polle, K. M. J., Lindemans, C. A., van der Bruggen, T., Hagen, F. & Wolfs, T. F. W., 13 Jun 2022, (E-pub ahead of print) In: Pediatric Infectious Disease Journal.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
4 Citations (Scopus) -
Multicenter Study of Susceptibility of Aspergillus Species Isolated from Iranian University Hospitals to Seven Antifungal Agents
Badiee, P., Boekhout, T., Zarei Mahmoudabadi, A., Mohammadi, R., Ayatollahi Mousavi, S. A., Najafzadeh, M. J., Soltani, J., Hashemi, J., Diba, K., Ghadimi-Moghadam, A., Salimi-Khorashad, A. R., Shokohi, T., Amin Shahidi, M., Ghasemi, F. & Jafarian, H., 29 Jun 2022, In: Microbiology spectrum. 10, 3, p. e0253921Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access10 Citations (Scopus) -
Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex
Passer, A. R., Clancey, S. A., Shea, T., David-Palma, M., Averette, A. F., Boekhout, T., Porcel, B. M., Nowrousian, M., Cuomo, C. A., Sun, S., Heitman, J. & Coelho, M. A., 17 Jun 2022, In: eLife. 11Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access4 Citations (Scopus) -
Proposed nomenclature for Pseudallescheria, Scedosporium and related genera (vol 67, pg 1, 2014)
Lackner, M., de Hoog, G. S., Yang, L., Ferreira Moreno, L., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Floerl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J-P., Cano-Lira, J. F., Guarro, J., Gene, J., Fernandez Silva, F., & 47 others, Mar 2022, In: Fungal Diversity. 113, 1, p. 193-194Research output: Contribution to journal/periodical › Article › Scientific › peer-review
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Standardized methods to rear high-quality Galleria mellonella larvae for the study of fungal pathogens
de Jong, A. W., van Veldhuizen, D., Groot, A. T. & Hagen, F., Dec 2022, In: Entomologia Experimentalis et Applicata. 170, 12, p. 1073-1080Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
2021
A new duplex PCR assay for the rapid screening of mating-type idiomorphs of pathogenic Sporothrix species
de Carvalho, J. A., Pinheiro, B. G., Hagen, F., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., de Camargo, Z. P. & Rodrigues, A. M., Oct 2021, In: Fungal Biology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access18 Citations (Scopus) -
Chromoblastomycosis in Latin America and the Caribbean: epidemiology over the past 50 years
Guevara, A., Siqueira, N. P., Nery, A. F., Cavalcante, L. R. D. S., Hagen, F. & Hahn, R. C., 12 Oct 2021, In: Medical Mycology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
15 Citations (Scopus) -
Cryptococcosis and Cryptococcus
Francisco, E. C., de Jong, A. W. & Hagen, F., 05 Jul 2021, In: Mycopathologia.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access23 Citations (Scopus) -
Cryptococcus bacillisporus causing cryptococcoma of the beak of an African grey parrot (Psittacus erithacus), Portugal
Silva, C., Juan-Sallés, C., Mendes, J., Mendes, A., Ruivo, M., Abad, J. L., Hagen, F. & Colom, M. F., Dec 2021, In: Medical Mycology Case Reports. 34, p. 8-12 5 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Development and Analysis of qPCR for the Identification of Arthroconidial Yeasts of the Genus Magnusiomyces
Kaplan, E., Aktaş, D., Döğen, A., Hilmioğlu-Polat, S., Gümral, R., Hagen, F., Ilkit, M. & de Hoog, G. S., Mar 2021, In: Mycopathologia. 186, 1, p. 41-51 11 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
1 Citation (Scopus) -
Development and evaluation of a multiplex qPCR assay for rapid diagnostics of emerging sporotrichosis
Della Terra, P. P., Gonsales, F. F., de Carvalho, J. A., Hagen, F., Kano, R., Bonifaz, A., Camargo, Z. P. D. & Rodrigues, A. M., 23 Oct 2021, In: Transboundary and emerging diseases.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
13 Citations (Scopus) -
Domestic Birds as Source of Cryptococcus deuterogattii (AFLP6/VGII): Potential Risk for Cryptococcosis
Siqueira, N. P., Favalessa, O. C., Maruyama, F. H., Dutra, V., Nakazato, L., Hagen, F. & Hahn, R. C., 11 Nov 2021, In: Mycopathologia.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access7 Citations (Scopus) -
Emergence of Candida auris in Brazil in a COVID-19 Intensive Care Unit
de Almeida, J. N., Francisco, E. C., Hagen, F., Brandão, I. B., Pereira, F. M., Presta Dias, P. H., de Miranda Costa, M. M., de Souza Jordão, R. T., de Groot, T. & Colombo, A. L., 17 Mar 2021, In: Journal of Fungi. 7, 3Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access71 Citations (Scopus)