Westerdijk Fungal Biodiversity Institute - Software and Databasing

Research output

Research output per year 2017 2017 2018 2019 2021 2023

• 35 Article
• 2 Book/Film/Article review
• 1 Chapter
• 1 Contribution to conference proceedings

Research output per year

Research output per year

Search results

• 2023

  Unveiling Fungal Community Structure along Different Levels of Anthropic Disturbance in a South American Subtropical Lagoon

  Pagani, D. M., Ventura, S. P. R., Vu, D., Mendes-Pereira, T., Ribeiro Tomé, L. M., Carvalho, D. S. D., Costa-Rezende, D. H., Kato, R. B., García, G. J. Y., Geml, J., Robert, V., They, N. H., Brenig, B., Azevedo, V., Scroferneker, M. L., Valente, P. & Góes-Neto, A., Sept 2023, In: Journal of Fungi. 9, 9, 890.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Mycobiome 100%
  • Estuaries 99%
  • Fungal Structures 98%
  • Body Water 76%
  • Fresh Water 74%
• 2022

  Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

  Bretagne, S., Sitbon, K., Desnos-Ollivier, M., Garcia-Hermoso, D., Letscher-Bru, V., Cassaing, S., Millon, L., Morio, F., Gangneux, J-P., Hasseine, L., Favennec, L., Cateau, E., Bailly, E., Moniot, M., Bonhomme, J., Desbois-Nogard, N., Chouaki, T., Paugam, A., Bouteille, B., Pihet, M., & 8 othersDalle, F., Eloy, O., Sasso, M., Demar, M., Mariani-Kurkdjian, P., Robert, V., Lortholary, O. & Dromer, F., 28 Jun 2022, In: mBio. 13, 3

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  43 Citations (Scopus)

• MinION Sequencing of Yeast Mock Communities To Assess the Effect of Databases and ITS-LSU Markers on the Reliability of Metabarcoding Analysis

  Conti, A., Pierantoni, D. C., Robert, V., Corte, L. & Cardinali, G., 15 Dec 2022, (E-pub ahead of print) In: Microbiology spectrum.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  5 Citations (Scopus)

• Proposed nomenclature for Pseudallescheria, Scedosporium and related genera (vol 67, pg 1, 2014)

  Lackner, M., de Hoog, G. S., Yang, L., Ferreira Moreno, L., Ahmed, S. A., Andreas, F., Kaltseis, J., Nagl, M., Lass-Floerl, C., Risslegger, B., Rambach, G., Speth, C., Robert, V., Buzina, W., Chen, S., Bouchara, J-P., Cano-Lira, J. F., Guarro, J., Gene, J., Fernandez Silva, F., & 47 othersHaido, R., Haase, G., Havlicek, V., Garcia-Hermoso, D., Meis, J. F., Hagen, F., Kirchmair, M., Rainer, J., Schwabenbauer, K., Zoderer, M., Meyer, W., Gilgado, F., Schwabenbauer, K., Vicente, V. A., Pieckova, E., Regenermel, M., Rath, P-M., Steinmann, J., de Alencar, X. W., Symoens, F., Tintelnot, K., Ulfig, K., Velegraki, A., Tortorano, A. M., Giraud, S., Mina, S., Rigler-Hohenwarter, K., Hernando, F. L., Ramirez-Garcia, A., Pellon, A., Kaur, J., Bergter, E. B., de Meirelles, J. V., da Silva, I. D., Delhaes, L., Alastruey-Izquierdo, A., Li, R., Lu, Q., Moussa, T., Almaghrabi, O., Al-Zahrani, H., Okada, G., Deng, S., Liao, W., Zeng, J., Issakainen, J. & Liporagi Lopes, L. C., Mar 2022, In: Fungal Diversity. 113, 1, p. 193-194

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
• 2021

  Author Correction: Fungal taxonomy and sequence-based nomenclature

  Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H. R., & 8 othersÖpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N. & Schoch, C. L., 27 May 2021, In: Nature Microbiology.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  2 Citations (Scopus)

• Environmental Candida auris and the Global Warming Emergence Hypothesis

  Casadevall, A., Kontoyiannis, D. P. & Robert, V., 16 Mar 2021, In: mBio. 12, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Global Warming 100%
  • Candida 63%
  • Temperature 22%
  • Thermotolerance 22%
  • Climate Change 21%
  77 Citations (Scopus)

• Fusarium: more than a node or a foot-shaped basal cell

  Crous, P. W., Lombard, L., Sandoval-Denis, M., Seifert, K. A., Schroers, H-J., Chaverri, P., Gené, J., Guarro, J., Hirooka, Y., Bensch, K., Kema, G. H. J., Lamprecht, S. C., Cai, L., Rossman, A. Y., Stadler, M., Summerbell, R. C., Taylor, J. W., Ploch, S., Visagie, C. M., Yilmaz, N., & 107 othersFrisvad, J. C., Abdel-Azeem, A. M., Abdollahzadeh, J., Abdolrasouli, A., Akulov, A., Alberts, J. F., Araújo, J. P. M., Ariyawansa, H. A., Bakhshi, M., Bendiksby, M., Amor, A. B. H., Bezerra, J. D. P., Boekhout, T., Câmara, M. P. S., Carbia, M., Cardinali, G., Castañeda-Ruiz, R. F., Celis, A., Chaturvedi, V., Collemare, J., Croll, D., Damm, U., Decock, C. A., Vries, R. P. D., Ezekiel, C. N., Fan, X. L., Fernández, N. B., Gaya, E., González, C. D., Gramaje, D., Groenewald, J. Z., Grube, M., Guevara-Suarez, M., Gupta, V. K., Guarnaccia, V., Haddaji, A., Hagen, F., Haelewaters, D., Hansen, K., Hashimoto, A., Hernández-Restrepo, M., Houbraken, J., Hubka, V., Hyde, K. D., Iturriaga, T., Jeewon, R., Johnston, P. R., Jurjević, Ž., Karalti, İ., Korsten, L., Kuramae, E. E., Kušan, I., Labuda, R., Lawrence, D. P., Lee, H. B., Lechat, C., Li, H. Y., Litovka, Y. A., Maharachchikumbura, S. S. N., Marin-Felix, Y., Kemkuignou, B. M., Matočec, N., McTaggart, A. R., Mlčoch, P., Mugnai, L., Nakashima, C., Nilsson, R. H., Noumeur, S. R., Pavlov, I. N., Peralta, M. P., Phillips, A. J. L., Pitt, J. I., Polizzi, G., Quaedvlieg, W., Rajeshkumar, K. C., Restrepo, S., Rhaiem, A., Robert, J., Robert, V., Rodrigues, A. M., Salgado-Salazar, C., Samson, R. A., Santos, A. C. S., Shivas, R. G., Souza-Motta, C. M., Sun, G. Y., Swart, W. J., Szoke, S., Tan, Y. P., Taylor, J. E., Taylor, P. W. J., Tiago, P. V., Váczy, K. Z., Wiele, N. V. D., Merwe, N. A. V. D., Verkley, G. J. M., Vieira, W. A. S., Vizzini, A., Weir, B. S., Wijayawardene, N. N., Xia, J. W., Yáñez-Morales, M. J., Yurkov, A., Zamora, J. C., Zare, R., Zhang, C. L. & Thines, M., Apr 2021, In: Studies in Mycology. 98, 184 p., 100116.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fusarium 100%
  • Foot 64%
  • Nectriaceae 51%
  • Gibberella 33%
  • cells 24%
  215 Citations (Scopus)

• Homoplasy as an Auxiliary Criterion for Species Delimitation

  Conti, A., Casagrande Pierantoni, D., Robert, V., Cardinali, G. & Corte, L., 28 Jan 2021, In: Microorganisms. 9, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Noise 100%
  • Horizontal Gene Transfer 72%
  2 Citations (Scopus)

• How does temperature trigger biofilm adhesion and growth in Candida albicans and two Non-Candida-albicans Candida species?

  Casagrande Pierantoni, D., Corte, L., Casadevall, A., Robert, V., Cardinali, G. & Tascini, C., 24 Apr 2021, (E-pub ahead of print) In: Mycoses.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Candida albicans 100%
  • Biofilms 97%
  • Temperature 71%
  • Growth 50%
  • Candida 25%
  9 Citations (Scopus)

• Nomenclatural issues concerning cultured yeasts and other fungi: why it is important to avoid unneeded name changes

  Yurkov, A., Alves, A., Bai, F-Y., Boundy-Mills, K., Buzzini, P., Čadež, N., Cardinali, G., Casaregola, S., Chaturvedi, V., Collin, V., Fell, J. W., Girard, V., Groenewald, M., Hagen, F., Hittinger, C. T., Kachalkin, A. V., Kostrzewa, M., Kouvelis, V., Libkind, D., Liu, X., & 16 othersMaier, T., Meyer, W., Péter, G., Piątek, M., Robert, V., Rosa, C. A., Sampaio, J. P., Sipiczki, M., Stadler, M., Sugita, T., Sugiyama, J., Takagi, H., Takashima, M., Turchetti, B., Wang, Q-M. & Boekhout, T., 13 Jul 2021, In: IMA Fungus. 12, 1, p. 18

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • yeast 100%
  • Names 96%
  • Fungi 91%
  • fungus 88%
  • Yeasts 82%
  18 Citations (Scopus)

• Perspectives on automated composition of workflows in the life sciences

  Lamprecht, A-L., Palmblad, M., Ison, J., Schwämmle, V., Al Manir, M. S., Altintas, I., Baker, C. J. O., Ben Hadj Amor, A., Capella-Gutierrez, S., Charonyktakis, P., Crusoe, M. R., Gil, Y., Goble, C., Griffin, T. J., Groth, P., Ienasescu, H., Jagtap, P., Kalaš, M., Kasalica, V., Khanteymoori, A., & 12 othersKuhn, T., Mei, H., Ménager, H., Möller, S., Richardson, R. A., Robert, V., Soiland-Reyes, S., Stevens, R., Szaniszlo, S., Verberne, S., Verhoeven, A. & Wolstencroft, K., 2021, In: F1000Research. 10, p. 897

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Biological Science Disciplines 100%
  • Workflow 88%
  • Pipeline 46%
  • Application 25%
  • Semantics 19%
  11 Citations (Scopus)

• Single Strain High-Depth NGS Reveals High rDNA (ITS-LSU) Variability in the Four Prevalent Pathogenic Species of the Genus Candida

  Colabella, C., Casagrande Pierantoni, D., Corte, L., Roscini, L., Conti, A., Bassetti, M., Tascini, C., Robert, V. & Cardinali, G., 02 Feb 2021, In: Microorganisms. 9, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Tandem Repeat Sequences 100%
  • Ribosomal DNA 92%
  • Candida 80%
  • Ribosomal RNA 49%
  • Ecology 47%
  10 Citations (Scopus)

• What Is the Best Lens? Comparing the Resolution Power of Genome-Derived Markers and Standard Barcodes

  Conti, A., Corte, L., Casagrande Pierantoni, D., Robert, V. & Cardinali, G., 02 Feb 2021, In: Microorganisms. 9, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • High-Throughput Nucleotide Sequencing 100%
  • Lenses 98%
  • Saccharomyces 71%
  • Genome 70%
  • Metagenomics 64%
  6 Citations (Scopus)
• 2020

  Do metabolomics and taxonomic barcode markers tell the same story about the evolution of saccharomyces sensu stricto complex in fermentative environments?

  Roscini, L., Conti, A., Pierantoni, D. C., Robert, V., Corte, L. & Cardinali, G., 15 Aug 2020, In: Microorganisms. 8, 8, p. 1-18 18 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Saccharomyces 100%
  • Metabolomics 79%
  • Spectrum Analysis 71%
  • Fourier Analysis 51%
  • Ethanol 24%
  3 Citations (Scopus)

• Evaluation of Microsatellite Typing, ITS Sequencing, AFLP Fingerprinting, MALDI-TOF MS, and Fourier-Transform Infrared Spectroscopy Analysis of Candida auris

  Vatanshenassan, M., Boekhout, T., Mauder, N., Robert, V., Maier, T., Meis, J. F., Berman, J., Then, E., Kostrzewa, M. & Hagen, F., 25 Aug 2020, In: Journal of Fungi. 6, 3

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • matrix-assisted laser desorption-ionization mass spectrometry 100%
  • Fourier Transform Infrared Spectroscopy 97%
  • Candida 93%
  • polymorphism 90%
  • Microsatellite Repeats 90%
  30 Citations (Scopus)

• Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

  Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Ariyawansa, H. A., Aoki, T., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Öpik, M., & 7 othersRobert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N. & Schoch, C. L., Jul 2020, In: IMA Fungus. 11, 32 p., 14.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal DNA 100%
  • DNA barcoding 65%
  • Fungi 54%
  • fungus 52%
  • DNA 49%
  311 Citations (Scopus)
• 2019

  Database establishment for the secondary fungal DNA barcode translational elongation factor 1 alpha (TEF1 alpha)

  Meyer, W., Irinyi, L., Minh Thuy Vi Hoang, Robert, V., Garcia-Hermoso, D., Desnos-Ollivier, M., Yurayart, C., Tsang, C-C., Lee, C-Y., Woo, P. C. Y., Pchelin, I. M., Uhrlass, S., Nenoff, P., Chindamporn, A., Chen, S., Hebert, P. D. N., Sorrell, T. C., Halliday, C., Arthur, I., Moretti, M. L., & 27 othersde Almeida Soares, C. M., Muniz, M. D. M., Zancope-Oliveira, R. M., Cruz, F. O., Melo, A. S. D. A., Colombo, A. L., Nishikaku, A. S., Hendrickx, M., Stubbe, D., Normand, A-C., Piarroux, R., Ranque, S., Dromer, F., Arabatzis, M., Velegraki, A., Cardinali, G., Castanon, L. R., Taylor, M. L., Toriello, C., de Hoog, S., Pais, C., de Beer, W., Gryzenhout, M., Guarro, J., Cano-Lira, J. F., Robbertse, B. & Schoch, C., Mar 2019, In: Genome. 62, 3, p. 160-169

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal DNA 100%
  • Peptide Elongation Factor 1 90%
  • Mycoses 40%
  • Databases 36%
  • DNA 33%
  42 Citations (Scopus)

• Dual DNA barcoding for the molecular identification of the agents of invasive fungal infections

  Hoang, M. T. V., Irinyi, L., Chen, S. C. A., Sorrell, T. C., Meyer, W., Arabatzis, M., Arthur, I., Cano-Lira, J. F., Cardinali, G., Castañón, L. R., Chen, W., Chindamporn, A., Colombo, A. L., Desnos-Ollivier, M., De Beer, W., De Hoog, S., Fungal, W., Dromer, F., Garcia-Hermoso, D., Gryzenhout, M., & 25 othersGuarro, J., Halliday, C., Hendrickx, M., Huhndorf, S., Andre Levesque, C., Moretti, M. L., De Medeiros Muniz, M., De Azevedo Melo, A. S., Nishikaku, A. S., Normand, A. C., Pais, C., Piarroux, R., Ranque, S., Robbertse, B., Robert, V., Schoch, C. L., Seifert, K. A., De Almeida Soares, C. M., Spouge, J. L., Stubbe, D., Taylor, M. L., Toriello, C., Velegraki, A., Yurayart, C. & Zancopé-Oliveira, R. M., 2019, In: Frontiers in Microbiology. 10, JULY

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Invasive Fungal Infections 100%
  • Fungal DNA 85%
  • DNA 43%
  • Peptide Elongation Factor 1 38%
  • Cryptococcosis 33%
  43 Citations (Scopus)

• Fungal biological resources to support international development: challenges and opportunities

  Ryan, M., McCluskey, K., Verkley, G. J. M., Robert, V. & Smith, D., Sept 2019, In: World Journal of Microbiology and Biotechnology. 35, p. 139 13 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • microbial genetic resources 100%
  • biological resources 71%
  • sustainable development 57%
  • infrastructure 54%
  • developed countries 54%
  28 Citations (Scopus)

• Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation

  Vu, D., Groenewald, M., de Vries, M., Gehrmann, T., Stielow, B., Eberhardt, U., Al-Hatmi, A., Groenewald, J. Z., Cardinali, G., Houbraken, J., Boekhout, T., Crous, P. W., Robert, V. & Verkley, G. J. M., Mar 2019, In: Studies in Mycology. 92, p. 135-154 20 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal DNA 100%
  • Fungi (Kingdom) 97%
  • DNA barcoding 65%
  • Genetic Markers 63%
  • Fungi 54%
  774 Citations (Scopus)

• On the Emergence of Candida auris: Climate Change, Azoles, Swamps, and Birds

  Casadevall, A., Kontoyiannis, D. P. & Robert, V., Jul 2019, In: mBio. 10, 4

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  280 Citations (Scopus)

• Phyllosticta citricarpa and sister species of global importance to Citrus

  Guarnaccia, V., Gehrmann, T., Silva-Junior, G. J., Fourie, P. H., Haridas, S., Vu, D., Spatafora, J., Martin, F. M., Robert, V., Grigoriev, I. V., Groenewald, J. Z. & Crous, P. W., 01 Dec 2019, In: Molecular Plant Pathology. 20, 12, p. 1619-1635 17 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Guignardia citricarpa 100%
  • Citrus 79%
  • Phyllosticta 69%
  • genome 37%
  • fruit 29%
  49 Citations (Scopus)
• 2018

  (F-007) PROPOSAL TO RECOMMEND THE USE OF AN IDENTIFIER AS AN ALTERNATIVE TO THE CITATION OF THE AUTHORS OF FUNGAL NAMES

  Rambold, G., Bensch, K., Kirk, P. M., Yao, Y-J., Robert, V. & Triebel, D., Jun 2018, In: IMA Fungus. 9, 1, p. VI-VII

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Early Ongoing Speciation of Ogataea uvarum Sp. Nov. Within the Grape Ecosystem Revealed by the Internal Variability Among the rDNA Operon Repeats

  Roscini, L., Tristezza, M., Corte, L., Colabella, C., Perrotta, C., Rampino, P., Robert, V. A. R. G., Vu, D., Cardinali, G. & Grieco, F., 03 Aug 2018, In: Frontiers in Microbiology. p. 1687

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Vitis 100%
  • Ribosomal DNA 90%
  • Ecosystem 85%
  • Operon 84%
  • Yeasts 62%
  12 Citations (Scopus)

• Fungal Stress Database (FSD)-a repository of fungal stress physiological data

  Orosz, E., van de wiele, N., Emri, T., Zhou, M., Robert, V., de Vries, R. P. & Pocsi, I., 12 Feb 2018, In: DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  17 Citations (Scopus)

• Impact of Yeast Pigmentation on Heat Capture and Latitudinal Distribution

  Cordero, R. J. B., Robert, V., Cardinali, G., Arinze, E. S., Thon, S. M. & Casadevall, A., 20 Aug 2018, In: Current Biology. 28, 16, p. 2657-2664.e3

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Pigmentation 100%
  • pigmentation 87%
  • Yeasts 71%
  • Hot Temperature 68%
  • Heat 65%
  57 Citations (Scopus)

• NGS barcode sequencing in taxonomy and diagnostics, an application in "Candida" pathogenic yeasts with a metagenomic perspective

  Colabella, C., Corte, L., Roscini, L., Bassetti, M., Mellor, J. C., Meyer, W., Robert, V. A. R. G., Vu, D. & Cardinali, G., 09 Jun 2018, In: IMA Fungus. p. 91-105 15 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Metagenomics 100%
  • Ribosomal DNA 94%
  • barcoding 90%
  • Candida 88%
  • ribosomal DNA 79%
  21 Citations (Scopus)

• The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

  Wu, L., McCluskey, K., Desmeth, P., Liu, S., Hideaki, S., Yin, Y., Moriya, O., Itoh, T., Kim, C. Y., Lee, J-S., Zhou, Y., Kawasaki, H., Hazbón, M. H., Robert, V., Boekhout, T., Lima, N., Evtushenko, L., Boundy-Mills, K., Bunk, B., Moore, E. R. B., & 13 othersEurwilaichitr, L., Ingsriswang, S., Shah, H., Yao, S., Jin, T., Huang, J., Shi, W., Sun, Q., Fan, G., Li, W., Li, X., Kurtböke, I. & Ma, J., 01 May 2018, In: GigaScience. 7, 5

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungi 100%
  • Catalogs 91%
  • Microorganisms 87%
  • Metagenomics 45%
  • Data Mining 44%
  40 Citations (Scopus)

• Yeast Biofilm as a Bridge Between Medical and Environmental Microbiology Across Different Detection Techniques

  Roscini, L., Vassiliou, A., Corte, L., Casagrande Pierantoni, D., Robert, V., Tascini, C., Mattana, S., Alunni Cardinali, M., Orfanos, S. E., Fioretto, D. & Cardinali, G., Mar 2018, In: Infectious Diseases and Therapy. 7, Suppl 1, p. 27-34 8 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Environmental Microbiology 100%
  • Biofilms 53%
  • Yeasts 43%
  • Microbiology 22%
  • Communicable Diseases 9%
  12 Citations (Scopus)
• 2017

  Citation of a taxon name identifier issued by the ICN-recognized registration repositories instead of taxon name author citation

  Rambold, G., Bensch, K., Kirk, P. M., Yao, Y-J., Robert, V., Sanz, V. & Triebel, D., Oct 2017, In: Taxon. 66, 5, p. 1200-1203

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  1 Citation (Scopus)

• Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

  de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Uchima, C. A., Anderluh, G., Asadollahi, M., Askin, M., Barry, K. W., Battaglia, E., Bayram, O., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Canovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C., & 97 othersClum, A., Correa dos Santos, R. A., de Lima Damasio, A. R., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo, A., Gournas, C., Habgood, R., Hainaut, M., Laura Harispe, M., Henrissat, B., Hilden, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karanyi, Z., Krasevec, N., Kuo, A., Kusch, H., LaButti, K. M., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E. A., Lipzen, A. M., Logrieco, A. F., Maccabe, A., Makela, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnar, A. P., Mule, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H-S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F. J., Ramon, A., Rauscher, S., Record, E., Riano-Pachon, D. M., Robert, V., Roehrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Sandor, E., Sanguinetti, M., Schutze, T., Sepcic, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., van de Wiele, N., van Rossen-Uffink, D., de Castro Oliveira, J. V., Vesth, T. C., Visser, J., Yu, J-H., Zhou, M., Andersen, M. R., Archer, D. B., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G. H., Fischer, R., Frisvad, J. C., Goldman, G. H., Houbraken, J., Oakley, B. R., Pocsi, I., Scazzocchio, C., Seiboth, B., vanKuyk, P. A., Wortman, J. R., Dyer, P. S. & Grigoriev, I. V., 14 Feb 2017, In: Genome Biology. 18

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  360 Citations (Scopus)

• fMLC: Fast Multi-Level Clustering and Visualization of Large Molecular Datasets

  Vu, D., Georgievska, S., Szoke, S., Kuzniar, A. & Robert, V., 15 Dec 2017, In: Bioinformatics.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Visualization 100%
  • Clustering 87%
  • Cluster Analysis 82%
  • Datasets 72%
  • Data Visualization 67%
  12 Citations (Scopus)

• Next Generation Sequencing: problems and opportunities for next generation studies of microbial communities in food and food industry

  Oct 2017, In: Current Opinion in Food Science. p. 62 67 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  9 Citations (Scopus)

• Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform

  Prakash, P. Y., Irinyi, L., Halliday, C., Chen, S., Robert, V. & Meyer, W., Apr 2017, In: Journal of Clinical Microbiology. 55, 4, p. 1011-1024

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  42 Citations (Scopus)

• The Oleaginous Yeast Meyerozyma guilliermondii B1281A as a New Potential Biodiesel Feedstock: Selection and Lipid Production Optimization

  Ramirez-Castrillon, M., Jaramillo-Garcia, V. P., Rosa, P. D., Landell, M. F., Duong Vu, N. V., Fabricio, M. F., Ayub, M. A. Z., Robert, V., Henriques, J. A. P. & Valente, P., 22 Sept 2017, In: Frontiers in Microbiology. 8

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access
  34 Citations (Scopus)