• Netherlands

  • Netherlands

Research Output

2020

A computational framework to explore large-scale biosynthetic diversity

Navarro-Munoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In : Nature Chemical Biology. 16, 1, p. 60-+

Research output: Contribution to journal/periodicalArticleScientificpeer-review

A new species concept for the clinically relevant Mucor circinelloides complex

Wagner, L., Stielow, J. B., de Hoog, S., Bensch, K., Schwartze, V. U., Voigt, K., Alastruey-Izquierdo, A., Kurzai, O. & Walther, G., Jun 2020, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. p. 67-97

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)

Hou, L., Hernández-Restrepo, M., Groenewald, J. Z., Cai, L. & Crous, P. W., 10 Mar 2020, In : MycoKeys. 65, p. 49-99 51 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

CRISPR/Cas9 technology enables the development of the filamentous ascomycete fungus Penicillium subrubescens as a new industrial enzyme producer

Salazar-Cerezo, S., Kun, R. S., de Vries, R. P. & Garrigues, S., Feb 2020, In : Enzyme and microbial technology. 133, p. 109463

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Cytospora (Diaporthales) in China

Fan, X., Bezerra, J. D. P., Tian, C-M. & Crous, P. W., Dec 2020, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. 45, p. 1-45

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Human blastomycosis in South Africa caused by Blastomyces percursus and Blastomyces africanus sp. nov., 1967 - 2014

Maphanga, T. G., Birkhead, M., Muñoz, J. F., Allam, M., Zulu, T. G., Cuomo, C. A., Schwartz, I. S., Ismail, A., Naicker, S. D., Mpembe, R. S., Corcoran, C., de Hoog, S., Kenyon, C., Borman, A. M., Frean, J. A. & Govender, N. P., 02 Jan 2020, In : Journal of Clinical Microbiology.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Madurella real-time PCR, a novel approach for eumycetoma diagnosis

Arastehfar, A., Lim, W., Daneshnia, F., van de Sande, W. W. J., Fahal, A. H., Desnos-Ollivier, M., de Hoog, G. S., Boekhout, T. & Ahmed, S. A., 15 Jan 2020, In : PLoS Neglected Tropical Diseases. 14, 1, p. e0007845

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens

Daly, P., Peng, M., Casado López, S., Lipzen, A., Ng, V., Singan, V. R., Wang, M., Grigoriev, I. V., de Vries, R. P. & Mäkelä, M. R., 20 Jan 2020, In : Journal of Biotechnology. 308, p. 35-39 5 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Polyphasic identification of three new species in Alternaria section Infectoriae causing human cutaneous infection

Iturrieta-González, I., Pujol, I., Iftimie, S., García, D., Morente, V., Queralt, R., Guevara-Suarez, M., Alastruey-Izquierdo, A., Ballester, F., Hernández-Restrepo, M. & Gené, J., 01 Feb 2020, In : Mycoses. 63, 2, p. 212-224 13 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Recombinant production and characterization of six novel GH27 and GH36 α-galactosidases from Penicillium subrubescens and their synergism with a commercial mannanase during the hydrolysis of lignocellulosic biomass

Coconi Linares, N., Dilokpimol, A., Stålbrand, H., Mäkelä, M. R. & de Vries, R. P., Jan 2020, In : Bioresource Technology. 295, p. 122258

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
Open Access
2019

23 years of research on Teratosphaeria leaf blight of Eucalyptus

Andjic, V., Carnegie, A. J., Pegg, G. S., Hardy, G. E. S. J., Maxwell, A., Crous, P. W., Pérez, C., Wingfield, M. J. & Burgess, T. I., Jul 2019, In : Forest Ecology and Management. 443, p. 19 - 27

Research output: Contribution to journal/periodicalArticleScientificpeer-review

A comparison between the homocyclic aromatic metabolic pathways from plant-derived compounds by bacteria and fungi

Lubbers, R. J. M., Dilokpimol, A., Visser, J., Makela, M. R., Hilden, K. S. & de Vries, R. P., 15 Nov 2019, In : BIOTECHNOLOGY ADVANCES. 37, 7

Research output: Contribution to journal/periodicalBook/Film/Article reviewScientific

A Comparison of Isolation Methods for Black Fungi Degrading Aromatic Toxins

Quan, Y., van den Ende, B. G., Shi, D., Prenafeta-Boldú, F. X., Liu, Z., Al-Hatmi, A. M. S., Ahmed, S. A., Verweij, P. E., Kang, Y. & de Hoog, S., Oct 2019, In : Mycopathologia. 184, 5, p. 653-660 8 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out

Hoeksma, J., Misset, T., Wever, C., Kemmink, J., Kruijtzer, J., Versluis, K., Liskamp, R. M. J., Boons, G. J., Heck, A. J. R., Boekhout, T. & den Hertog, J., 26 Nov 2019, In : Scientific Reports. 9, 1, p. 17546

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Anidulafungin Susceptibility Testing of Candida glabrata Isolates from Blood Cultures by the MALDI Biotyper Antibiotic (Antifungal) Susceptibility Test Rapid Assay

Vatanshenassan, M., Arastehfar, A., Boekhout, T., Berman, J., Lass-Flörl, C., Sparbier, K. & Kostrzewa, M., Sep 2019, In : Antimicrobial Agents and Chemotherapy. 63, 9

Research output: Contribution to journal/periodicalArticleScientificpeer-review

A novel diagnosis scoring model to predict invasive pulmonary aspergillosis in the intensive care unit

Rozaliyani, A., Sedono, R., Jusuf, A., Rumende, C. M., Aniwidyaningsih, W., Burhan, E., Prasenohadi, P., Handayani, D., Yunihastuti, E., Siagian, F. E., Jayusman, A. M., Rusli, A., Sungkar, S., Prihartono, J., Hagen, F., Meis, J. F. & Wahyuningsih, R., Feb 2019, In : Saudi medical journal. 40, 2, p. 140-146 7 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates

Arastehfar, A., Daneshnia, F., Hafez, A., Khodavaisy, S., Najafzadeh, M-J., Charsizadeh, A., Zarrinfar, H., Salehi, M., Shahrabadi, Z. Z., Sasani, E., Zomorodian, K., Pan, W., Hagen, F., Ilkit, M., Kostrzewa, M. & Boekhout, T., 12 Dec 2019, In : Medical Mycology.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

A Revised Species Concept for Opportunistic Mucor Species Reveals Species-Specific Antifungal Susceptibility Profiles

Wagner, L., de Hoog, S., Alastruey-Izquierdo, A., Voigt, K., Kurzai, O. & Walther, G., Aug 2019, In : Antimicrobial Agents and Chemotherapy. 63, 8

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Athelia rolfsii (= Sclerotium rolfsii) infects banana in the Philippines

Acabal, B. D., Dalisay, T. U., Groenewald, J. Z., Crous, P. W. & Cumagun, C. J. R., Dec 2019, In : Australasian Plant Disease Notes. 14, 1, p. 10 1 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

A tribute to Cletus P. Kurtzman (1938-2017)

Boekhout, T., 01 Aug 2019, In : FEMS Yeast Research. 19, 5

Research output: Contribution to journal/periodicalArticleProfessional

Attack, Defend and Persist: How the Fungal Pathogen Candida auris was Able to Emerge Globally in Healthcare Environments

de Jong, A. W. & Hagen, F., Jun 2019, In : Mycopathologia. 184, 3, p. 353-365 13 p.

Research output: Contribution to journal/periodicalBook/Film/Article reviewScientific

Open Access

Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon? (vol 9, 516, 2018)

Zoran, T., Sartori, B., Sappl, L., Aigner, M., Sanchez-Reus, F., Rezusta, A., Chowdhary, A., Taj-Aldeen, S. J., Arendrup, M. C., Oliveri, S., Kontoyiannis, D. P., Alastruey-Izquierdo, A., Lagrou, K., Lo Cascio, G., Meis, J. F., Buzina, W., Farina, C., Drogari-Apiranthitou, M., Grancini, A., Tortorano, A. M. & 34 others, Willinger, B., Hamprecht, A., Johnson, E., Klingspor, L., Arsic-Arsenijevic, V., Cornely, O. A., Meletiadis, J., Prammer, W., Tullio, V., Vehreschild, J-J., Trovato, L., Lewis, R. E., Segal, E., Rath, P-M., Hamal, P., Rodriguez-Iglesias, M., Roilides, E., Arikan-Akdagli, S., Chakrabarti, A., Colombo, A. L., Fernandez, M. S., Teresa Martin-Gomez, M., Badali, H., Petrikkos, G., Klimko, N., Heimann, S. M., Uzun, O., Roudbary, M., de la Fuente, S., Houbraken, J., Risslegger, B., Sabino, R., Lass-Florl, C. & Lackner, M., 14 Jan 2019, In : Frontiers in Microbiology. 9

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Back to the roots: a reappraisal of Neocosmospora

Sandoval-Denis, M., Lombard, L. & Crous, P. W., Dec 2019, In : Persoonia. 43, p. 90-185 96 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Botryosphaeriaceae associated with Acacia heterophylla (La Réunion) and Acacia koa (Hawaii)

Jami, F., Marincowitz, S., Slippers, B., Crous, P. W., Le Roux, J. J., Richardson, D. M. & Wingfield, M. J., 20 Jul 2019, In : Fungal Biology. 123, 11, p. 783-790 8 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Candida auris Identification and Rapid Antifungal Susceptibility Testing Against Echinocandins by MALDI-TOF MS

Vatanshenassan, M., Boekhout, T., Meis, J. F., Berman, J., Chowdhary, A., Ben-Ami, R., Sparbier, K. & Kostrzewa, M., 18 Feb 2019, In : Frontiers in cellular and infection microbiology. 9, p. 20

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Candida xylosifermentans sp. nov., a D-xylose-fermenting yeast species isolated in Thailand

Kaewwichian, R., Khunnamwong, P., Am-In, S., Jindamorakot, S., Groenewald, M. & Limtong, S., Sep 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 9, p. 2674-2680

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Case report: chronic relapsing cryptococcal meningitis in a patient with low mannose-binding lectin and a low naïve CD4 cell count

Wagemakers, A., Ang, C. W., Hagen, F., Bot, J. C. J., Bomers, M. K., Visser, M. C. & van Dijk, K., 15 Oct 2019, In : BMC Infectious Diseases. 19, 1, p. 846

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Changing Concepts and Current Definition of Majocchi's Granuloma

Durdu, M., Kandemir, H., Ilkit, M. & de Hoog, G. S., 11 Jul 2019, In : Mycopathologia.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Changing the game: resolving systematic issues in key Fusarium species complexes

Lombard, L., Sandoval-Denis, M., Cai, L. & Crous, P. W., 18 Dec 2019, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. 43, p. i-ii 2 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Chapter F of the International Code of Nomenclature for algae, fungi, and plants as approved by the 11th International Mycological Congress, San Juan, Puerto Rico, July 2018

May, T. W., Redhead, S. A., Bensch, K., Hawksworth, D. L., Lendemer, J., Lombard, L. & Turland, N. J., Dec 2019, In : IMA Fungus. 10, 1, 14 p., 21.

Research output: Contribution to journal/periodicalArticleProfessional

Open Access

Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: is the picture complete?

Collemare, J. & Seidl, M. F., 20 Jun 2019, In : FEMS Microbiology Reviews.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Navarro, J., Peng, M., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Visser, J., Hildén, K. S. & de Vries, R. P., 2019, In : Frontiers in bioengineering and biotechnology. 7, p. 249

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Clinical insights and epidemiology of central nervous system infection due to Cryptococcus neoformans/gattii species complexes: A prospective study from South India

Lahiri, S., Manjunath, N., Bhat, M., Hagen, F., Bahubali, V. H., Palaniappan, M., Maji, S. & Chandrashekar, N., 03 Oct 2019, In : Medical Mycology.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Colletotrichum species associated with anthracnose of Pyrus spp. in China

Fu, M., Crous, P. W., Bai, Q., Zhang, P. F., Xiang, J., Guo, Y. S., Zhao, F. F., Yang, M. M., Hong, N., Xu, W. X. & Wang, G. P., Jul 2019, In : Persoonia. 42, 1, p. 1-35 35 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation

Daly, P., Peng, M., Mitchell, H. D., Kim, Y-M., Ansong, C., Brewer, H., de Gijsel, P., Lipton, M. S., Markillie, L. M., Nicora, C. D., Orr, G., Wiebenga, A., Hildén, K. S., Kabel, M. A., Baker, S. E., Mäkelä, M. R. & de Vries, R. P., 25 Dec 2019, In : Environmental Microbiology.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Community dynamics of Neocallimastigomycetes in the rumen of yak feeding on wheat straw revealed by different primer sets

Wang, X-W., Benoit, I., Groenewald, J. Z., Houbraken, J., Dai, X., Peng, M., Yang, X., Han, D-Y., Gao, C. & Guo, L-D., Oct 2019, In : Fungal Ecology. 41, p. 34 - 44

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Comparative pathogenicity of opportunistic black yeasts in Aureobasidium

Wang, M., Danesi, P., James, T. Y., Al-Hatmi, A. M. S., Najafzadeh, M. J., Dolatabadi, S., Ming, C., Liou, G-Y., Kang, Y. & de Hoog, S., Sep 2019, In : Mycoses. 62, 9, p. 803-811 9 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries

Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F. & Boekhout, T., 2019, In : Frontiers in cellular and infection microbiology. 9, p. 21

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Corrigendum: Naganishia qatarensis sp. nov., a novel basidiomycetous yeast species from a hypersaline marine environment in Qatar

Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Anand, A., Al Malaki, A., Zeyara, A. & Al Marri, M., Mar 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 3, p. 873

Research output: Contribution to journal/periodicalArticleScientific

Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries

Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F. & Boekhout, T., 2019, In : Frontiers in cellular and infection microbiology. 9, p. 176

Research output: Contribution to journal/periodicalArticleScientific

Open Access

Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples - an Iranian multicentre study and a review of the literature

Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F. & Boekhout, T., Nov 2019, In : Journal of Medical Microbiology. 68, 11, p. 1695

Research output: Contribution to journal/periodicalArticleScientific

Open Access

Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases

Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaisy, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K. & Boekhout, T., 01 Nov 2019, In : Medical Mycology. 57, 8, p. e12

Research output: Contribution to journal/periodicalArticleScientific

Open Access

cyp51A Mutations, Extrolite Profiles, and Antifungal Susceptibility in Clinical and Environmental Isolates of the Aspergillus viridinutans Species Complex

Talbot, J. J., Frisvad, J. C., Meis, J. F., Hagen, F., Verweij, P. E., Hibbs, D. E., Lai, F., Groundwater, P. W., Samson, R. A., Kidd, S. E., Barrs, V. R. & Houbraken, J., Nov 2019, In : Antimicrobial Agents and Chemotherapy. 63, 11

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf

Fotedar, R., Fell, J. W., Boekhout, T., Kolecka, A., Zeyara, A., Kaul, R., Malki, A. A. & Marri, M. A., Mar 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 3, p. 839-845 7 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Database establishment for the secondary fungal DNA barcode translational elongation factor 1 alpha (TEF1 alpha)

Meyer, W., Irinyi, L., Minh Thuy Vi Hoang, Robert, V., Garcia-Hermoso, D., Desnos-Ollivier, M., Yurayart, C., Tsang, C-C., Lee, C-Y., Woo, P. C. Y., Pchelin, I. M., Uhrlass, S., Nenoff, P., Chindamporn, A., Chen, S., Hebert, P. D. N., Sorrell, T. C., Halliday, C., Arthur, I., Moretti, M. L. & 27 others, de Almeida Soares, C. M., Muniz, M. D. M., Zancope-Oliveira, R. M., Cruz, F. O., Melo, A. S. D. A., Colombo, A. L., Nishikaku, A. S., Hendrickx, M., Stubbe, D., Normand, A-C., Piarroux, R., Ranque, S., Dromer, F., Arabatzis, M., Velegraki, A., Cardinali, G., Castanon, L. R., Taylor, M. L., Toriello, C., de Hoog, S., Pais, C., de Beer, W., Gryzenhout, M., Guarro, J., Cano-Lira, J. F., Robbertse, B. & Schoch, C., Mar 2019, In : Genome. 62, 3, p. 160-169

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass

Benocci, T., Aguilar-Pontes, M. V., Kun, R. S., Lubbers, R. J. M., Lail, K., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Seiboth, B., Daly, P. & de Vries, R. P., 09 Apr 2019

Research output: Other contributionScientific

Open Access

Developments and opportunities in fungal strain engineering for the production of novel enzymes and enzyme cocktails for plant biomass degradation

Kun, R. S., Gomes, A. C. S., Hilden, K. S., Cerezo, S. S., Makela, M. R. & de Vries, R. P., 01 Nov 2019, In : BIOTECHNOLOGY ADVANCES. 37, 6

Research output: Contribution to journal/periodicalBook/Film/Article reviewScientific

Discovery of Novel p-Hydroxybenzoate-m-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Peng, M., Visser, J., Makela, M. R., Hilden, K. S. & de Vries, R. P., 02 Dec 2019, In : ACS Sustainable Chemistry & Engineering. 7, 23, p. 19081-19089

Research output: Contribution to journal/periodicalArticleScientificpeer-review