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2019

The current biotechnological status and potential of plant and algal biomass degrading/modifying enzymes from ascomycete fungi.

de Vries, R. P., Patyshakuliyeva, A., Garrigues, S. & Agarwal-Jans, S., 2019, Grand challenges in Fungal Biotechnology. Nevalainen, H. (ed.). Springer Nature, p. 81-120 40 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

2018

Adiaspiromycosis and diseases caused by related fungi in Ajellomycetaceae

Borman, A. M., Jiang, Y., Dukik, K., Sigler, L., Schwartz, I. S. & de Hoog, S., Jun 2018, Emerging and epizootic fungal infections in animals. Springer, p. 147-158

Research output: Chapter in book/volumeChapterScientificpeer-review

Correction to: Rapid Identification of Seven Waterborne Exophiala Species by RCA DNA Padlock Probes (Mycopathologia, (2018), 183, 4, (669-677), 10.1007/s11046-018-0256-7)

Najafzadeh, M. J., Vicente, V. A., Feng, P., Naseri, A., Sun, J., Rezaei-Matehkolaei, A. & de Hoog, G. S., 01 Aug 2018, Mycopathologia. Springer Netherlands, p. 737 1 p. (Mycopathologia; vol. 183).

Research output: Chapter in book/volumeChapterScientificpeer-review

Open Access

Direct detection of Exophiala and Scedosporium species in sputa of patients with cystic fibrosis

Chen, M., Kondori, N., Deng, S., Van Den Ende, A. H. G. G., Lackner, M., Liao, W. & De Hoog, G. S., 2018, Medical Mycology. Oxford University Press, p. 695-702 8 p. (Medical Mycology; vol. 56).

Research output: Chapter in book/volumeChapterScientificpeer-review

Distribution of pathogens and outbreak fungi in the fungal Kingdom

de Hoog, S., Ahmed, S. A., Danesi, P., Guillot, J. & Gräser, Y., Jun 2018, Skin: Textbook and Atlas of Dermatology. Springer, p. 3-16

Research output: Chapter in book/volumeChapterScientificpeer-review

Feline sporotrichosis

Rodrigues, A. M., De Hoog, G. S. & De Camargo, Z. P., 11 Jun 2018, Emerging and Epizootic Fungal Infections in Animals. Springer International Publishing AG, p. 199-231 33 p. (Emerging and Epizootic Fungal Infections in Animals).

Research output: Chapter in book/volumeChapterScientificpeer-review

Fungal Communities in Hydrocarbon Degradation

Prenafeta-boldú, F. X., De Hoog, G. S. & Summerbell, R. C., 15 Oct 2018, Microbial Communities Utilizing Hydrocarbons and Lipids: Members, Metagenomics and Ecophysiology. McGenity, T. J. (ed.). Springer International Publishing AG, p. 1-36 Chapter 8-2

Research output: Chapter in book/volumeChapterScientificpeer-review

Peek-a-boo: now you see, now you don’t − the epidemiology of the Lethargic Crab Disease

Vicente, V., Orelis-Ribeiro, R., de Hoog, S. & Boeger, W. A., Jun 2018, Emerging and epizootic fungal infections in animals. Springer, p. 233-247

Research output: Chapter in book/volumeChapterScientificpeer-review

Phylogenetic and Phylogenomic Definition of Rhizopus Species

Gryganskyi, A. P., Golan, J., Dolatabadi, S., Mondo, S., Robb, S., Idnurm, A., Muszewska, A., Steczkiewicz, K., Masonjones, S., Liao, H-L., Gajdeczka, M. T., Anike, F., Vuek, A., Anishchenko, I. M., Voigt, K., de Hoog, G. S., Smith, M. E., Heitman, J., Vilgalys, R. & Stajich, J. E., Jun 2018, G3: Genes|Genomes|Genetics. p. 2007-2018 12 p. (G3: Genes|Genomes|Genetics; vol. 8).

Research output: Chapter in book/volumeChapterScientificpeer-review

Phylogeny, ecology and taxonomy of systemic pathogens and their relatives in Ajellomycetaceae (Onygenales): Blastomyces, Emergomyces, Emmonsia, Emmonsiellopsis

Jiang, Y., Dukik, K., Muñoz, J. F., Sigler, L., Schwartz, I. S., Govender, N. P., Kenyon, C., Feng, P., van den Ende, B. G., Stielow, J. B., Stchigel, A. M., Lu, H. & de Hoog, S., 01 May 2018, Fungal Diversity. Springer Netherlands, p. 245-291 47 p. (Fungal Diversity; vol. 90).

Research output: Chapter in book/volumeChapterScientificpeer-review

Open Access

Potent Activities of Luliconazole, Lanoconazole, and Eight Comparators against Molecularly Characterized Fusarium Species

Abastabar, M., Al-Hatmi, A. M. S., Moghaddam, M. V., De Hoog, G. S., Haghani, I., Aghili, S. R., Shokohi, T., Hedayati, M. T., Ghazvini, R. D., Kachuei, R., Rezaei-Matehkolaei, A., Makimura, K., Meis, J. F. & Badalia, H., 01 May 2018, Antimicrobial Agents and Chemotherapy. American Society for Microbiology, (Antimicrobial Agents and Chemotherapy; vol. 62).

Research output: Chapter in book/volumeChapterScientificpeer-review

Rapid Identification of Seven Waterborne Exophiala Species by RCA DNA Padlock Probes

Najafzadeh, M. J., Vicente, V. A., Feng, P., Naseri, A., Sun, J., Rezaei-Matehkolaei, A. & de Hoog, G. S., 01 Aug 2018, Mycopathologia. Springer Netherlands, p. 669-677 9 p. (Mycopathologia; vol. 183).

Research output: Chapter in book/volumeChapterScientificpeer-review

Open Access

Role of microbial cultures and enzymes during cheese production and ripening

de Vries, R. P., 2018, Microbial cultures and enzymes in dairy technology. : Advances in Medical Technologies and Clinical Practice (AMTCP). IGI Global, p. 182-203

Research output: Chapter in book/volumeChapterScientificpeer-review

Subcutaneous and secondary cutaneous fungal infections

Ahmed, S. A., van de Sande, W. W. J., Bonifaz, A. & de Hoog, S., 2018, Skin: Textbook and Atlas of Dermatology. 17 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

2017

Afbraak van organisch materiaal

de Vries, R. P., 2017, Schimmels: van plaag tot bouwmeester. Stichting Biowetenschappen en Maatschappij, p. 12 14 p.

Research output: Chapter in book/volumeChapterProfessional

Fascinerend bederf.

Dijksterhuis, J., 01 Sep 2017, Schimmels, van plaag tot bouwmeester. p. 47-50 4 p.

Research output: Chapter in book/volumeChapterProfessional

Fungi for food, drink and health

Dijksterhuis, J. & Boekhout, T., 23 Oct 2017, Mighty Microbes: Fungi for food, drink and health . Castricum

Research output: Chapter in book/volumeChapterProfessional

Fungi for food and drinks

Boekhout, T. & Dijksterhuis, J., 2017, Mighty Microbes. Stichting Microcanon, p. 79-80

Research output: Chapter in book/volumeChapterProfessional

Skin Fungi from Colonization to Infection

de Hoog, S., Monod, M., Dawson, T., Boekhout, T., Mayser, P. & Graeser, Y., 01 Jul 2017, The fungal kingdom. Vol. 5.

Research output: Chapter in book/volumeChapterScientificpeer-review

Yeasts as Distinct Life Forms of Fungi.

Boekhout, T. & Kurtzman, C., 2017, Yeasts in Natural Ecosystems: Ecology . Yurkov, A., Lachance, A. & P. B. (eds.). Springer, p. 1-37 DOI 10.1007/978-3-319-62683-3

Research output: Chapter in book/volumeChapterScientificpeer-review

2016

Evolutionary adaptation as a tool to generate targeted mutant strains as evidence by increased inulinase production in Aspergillus oryzae

de Vries, R. P., Culleton, H. & McVie, V., 2016, Aspergillus and Penicillium in the post-genomic era. de Vries, R., Benoit Gerber, I. & Andersen, M. (eds.). Caister Academic Press, p. 189-196 18 p.

Research output: Chapter in book/volumeChapterScientific

Fate of lignin and substituted xylan during commercial cultivation of Agaricus bisporus

Kabel, M., Jurak, E., Patyshakuliyeva, A., de Vries, R. & Gruppen, H., 2016, Science and cultivation of edible fungi: Proceedings of the XIXth international congress on the science and cultivation of edible fungi. Baars, J. & Sonnenberg, A. (eds.). International Society for Mushroom Science, Vol. 19 (part 1). p. 350-354 5 p. 73

Research output: Chapter in book/volumeChapterScientific

Fungal degradation of plant oligo- and polysaccharides

de Vries, R. P., van den Brink, J., Hildén, K., Mäkelä, M. & Stålbrand, H., 2016, Carbohydrate Modifying Biocatalysts. Grunwald, P. (ed.). Pan Stanford Publishing Pte, Ltd., p. 809 895 p.

Research output: Chapter in book/volumeChapterScientific

Fungal Ligninolytic Enzymes and Their Applications

Makela, M. R., Bredeweg, E. L., Magnuson, J. K., Baker, S. E., De Vries, R. P. & Hilden, K. S., Dec 2016, The fungal kingdom. Vol. 4.

Research output: Chapter in book/volumeChapterScientificpeer-review

Homologous and heterologous expression of basidio-mycete genes related to plant biomass degradation

de Vries, R. P., Casado Lopez, S., Sietiö, O., Hildén, K. & Mäkelä, M., 2016, Gene expression systems of fungi: applications and advancements. Schmoll, M. & Dattenböck, C. (eds.). p. 119-160

Research output: Chapter in book/volumeChapterScientific

Identification, Typing and Susceptibility Testing of Fungi (incl. Yeasts) by MALDI-TOF MS

Boekhout, T., Kolecka, A., Sanguinetti, M. & Posteraro, B., 2016, MALDI-TOF Mass Spectrometry in Microbiology. Kostrzewa, M. & Schubert, S. (eds.). Caister Academic Press, p. 49 78 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

Open Access

Production of feruloyl esterases by Aspergillus species

de Vries, R. P., Mäkelä, M., Hildén, K. & Jiménez Barboza, L., 2016, Aspergillus and Penicillium in the post-genomic era. de Vries, R., Benoit Gerber, I. & Andersen, M. (eds.). Caister Academic Press, p. 129-143 15 p.

Research output: Chapter in book/volumeChapterScientific

Taxonomy of Aspergillus, Penicillium and Talaromyces and its significance for biotechnology

Houbraken, J., Samson, R. A. & Yilmaz, N., 2016, Aspergillus and Penicillium in the Post-genomic Era. de Vries, R., Benoit Gelber, I. & Rordam Andersen, M. (eds.). Norfolk, p. 1-15 15 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

2015

Biodiversity bioinformatics, challenges and opportunities

Vu, D., 2015, Microbial Diversity 2015: The challenge of complexity. p. 145-149

Research output: Chapter in book/volumeChapterScientificpeer-review

bringing the its barcode in the ngs framework

2015, Microbial Diversity 2015: The challenge of complexity. p. 57-58

Research output: Chapter in book/volumeChapterScientificpeer-review

Curvularia, Exophiala, Scedosporium, Sporothrix, and other melanized fungi

2015, Curvularia, Exophiala, Scedosporium, Sporothrix, and other melanized fungi. p. 2153-2172

Research output: Chapter in book/volumeChapterScientificpeer-review

Fungal DNA Barcoding

2015, Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi. p. 37-56

Research output: Chapter in book/volumeChapterScientificpeer-review

Induction of the Sexual Cycle in Filamentous Ascomycetes

Berg, M. A. V. D. (ed.), Maruthachalam, K. (ed.), Houbraken, J. & Dyer, P. S., 2015, Genetic Transformation Systems in Fungi, Volume 2. Berg, M. A. V. D. & Maruthachalam, K. (eds.). Springer International Publishing AG, p. 23-46 24 p. (Genetic Transformation Systems in Fungi, Volume 2; vol. 2).

Research output: Chapter in book/volumeChapterScientificpeer-review

The role of herbaria and culture collections

Verkleij, G. J. M., Rossman, A. & Crouch, J. A., 2015, The Mycota - A comprehensive treatise on fungi as experimental systems fpr basic and applied research: Systematics and Evolution Part B. McLaughlin, D. J. & Spatafora, J. W. (eds.). 2 ed. Heidelberg: Springer Verlag GmbH, Vol. 7. p. 205 21 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

The use of FT-IR spectroscopy and ITS sequencing as useful tools for strain dereplication in medical environment

2015, Microbial Diversity 2015: The challenge of complexity. p. 103-104

Research output: Chapter in book/volumeChapterScientificpeer-review

Uniting Academic Achievements on Performance Analysis with Industrial Needs

Theelen, B. & Hooman, J., 2015, QUANTITATIVE EVALUATION OF SYSTEMS. Vol. 9259. p. 3-18 (Lecture Notes in Computer Science).

Research output: Chapter in book/volumeChapterScientificpeer-review

2014

Agaricomycetes

Hibbett, D. S., Bauer, R., Binder, M., Giachini, A. J., Hosaka, K., Justo, A., Larsson, E., Larsson, K-H., Lawrey, J. D., Miettinen, O., Nagy, L. G., Nilsson, R. H., Weiss, M. & Thorn, R. G., 2014, Systematics and Evolution: The Mycota: A Comprehensive Treatise on Fungi as Experimental Systems for Basic and Applied Research. McLaughlin, D. J. & Spatafora, J. W. (eds.). 2nd ed. Springer Verlag GmbH, Vol. 7A. p. 373-429

Research output: Chapter in book/volumeChapterScientificpeer-review

Degradation and modification of plant biomass by fungi.

Mäkelä, M. R., Hildén, K. S., de Vries, R. P. & van den Brink, J., 2014, Mycota vol XIII Fungal Genomics. Nowrousian, M. . (ed.). Berlin: Springer Verlag GmbH, p. 175-208 34 p.

Research output: Chapter in book/volumeChapterScientificpeer-review

Detection and enumeration of heat-resistant molds

Rico‐Munoz, E., Houbraken, J. & Samson, R. A., Jan 2014, Compendium of Methods for The Microbiological Examination of Foods . 5 ed. p. 1-11

Research output: Chapter in book/volumeChapterScientificpeer-review

Genomics, life-styles and future prospects of wood-decaying and litter-decomposing Basidiomycota

Lundell, T. K., Mäkelä, M. R., de Vries, R. P., Hildén, K. S. & van den Brink, J., 2014, Genomics of plant-related fungi. Martin, F. (ed.). London: Academic Press, Vol. 70. p. 329-370 42 p. (Advances in Botanical Research).

Research output: Chapter in book/volumeChapterScientificpeer-review

2013

Aspergilli and Biomass-Degrading Fungi

Benoit, I., de Vries, R. P., Baker, S. E. & Karagiosis, S. A., 2013, The Ecological Genomics of Fungi. p. 63-87

Research output: Chapter in book/volumeChapterScientific

Aspergillus: genomics of a cosmopolitan fungus

Benoit, I., Malavazi, I., Goldman, G. H., Baker, S. E. & de Vries, R. P., 2013, Genomics of Soil- and Plant-Associated Fungi. Horwitz, B. A., Mukherjee, P. K., Mukherjee, M. & Kubicek, C. P. (eds.). Heidelberg: Springer, Vol. 36. p. 89-126 300 p. (Soil Biology).

Research output: Chapter in book/volumeChapterScientific

Ecogenomics of Human and Animal Basidiomycetous Yeast Pathogens.

Sun, S., Hagen, F., Xu, J., Dawson, T., Heitman, J., Kronstad, J. W., Saunders, C. & Boekhout, T., 2013, The Ecological Genomics of Fungi. Martin, F. (ed.). p. 215-242

Research output: Chapter in book/volumeChapterScientific

Fungal spoilage of crops and food

Dijksterhuis, J., Houbraken, J. & Samson, R. A., 01 Jan 2013, Agricultural Applications, 2nd Edition. Springer Verlag GmbH, p. 35-56 22 p. (Agricultural Applications, 2nd Edition; vol. 11).

Research output: Chapter in book/volumeChapterScientificpeer-review

Fungal Spores for Dispersion in Space and Time

Wyatt, T. T., Wosten, H. A. B. & Dijksterhuis, J., 2013, ADVANCES IN APPLIED MICROBIOLOGY, VOL 85. Vol. 85. p. 43-91 (Advances in Applied Microbiology).

Research output: Chapter in book/volumeChapterScientificpeer-review

2012

Chapter 1.2 Hefen.

Boekhout, T., 2012, Mikrobiologischen Untersuchung von Lebensmitteln. Baumgart, J., Becker, B. & Stephan, R. (eds.).

Research output: Chapter in book/volumeChapterScientific

Diversity and biology of heat-resistant fungi

Houbraken, J., Dijksterhuis, J. & Samson, R. A., 2012, Stress responses of Foodborne Microorganisms. Wong, H-C. (ed.). p. 331-353

Research output: Chapter in book/volumeChapterScientific

Fungal degradation of plant oligo- and polysaccharides.

de Vries, R. P., Nayak, V., van den Brink, J., Vivas Duarte, A. D. & Stalbrand, H., 2012, Carbohydrate Modifying Biocatalysts.. Grunwald, P. (ed.). Singapore: Pan Stanford Publishing Pte, Ltd., p. 693-759

Research output: Chapter in book/volumeChapterScientific

2011

Acaromyces Boekhout, Scorzetti, Gerson & Sztejnberg

Boekhout, T., 2011, The Yeasts, a Taxonomic Study, 5th ed. Elsevier B.V., p. 1603-1606

Research output: Chapter in book/volumeChapterScientific

Aciculoconidium D.S.King & S.-C.Jong

Smith, M. T., 2011, The Yeasts, a taxonomic study, 5th ed. p. 955-957

Research output: Chapter in book/volumeChapterScientific