Research Output per year
Research Output
2020
A computational framework to explore large-scale biosynthetic diversity
Navarro-Munoz, J. C., Selem-Mojica, N., Mullowney, M. W., Kautsar, S. A., Tryon, J. H., Parkinson, E. I., De Los Santos, E. L. C., Yeong, M., Cruz-Morales, P., Abubucker, S., Roeters, A., Lokhorst, W., Fernandez-Guerra, A., Cappelini, L. T. D., Goering, A. W., Thomson, R. J., Metcalf, W. W., Kelleher, N. L., Barona-Gomez, F. & Medema, M. H., Jan 2020, In : Nature Chemical Biology. 16, 1, p. 60-+Research output: Contribution to journal/periodical › Article › Scientific › peer-review
A new species concept for the clinically relevant Mucor circinelloides complex
Wagner, L., Stielow, J. B., de Hoog, S., Bensch, K., Schwartze, V. U., Voigt, K., Alastruey-Izquierdo, A., Kurzai, O. & Walther, G., Jun 2020, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. p. 67-97Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)
Hou, L., Hernández-Restrepo, M., Groenewald, J. Z., Cai, L. & Crous, P. W., 10 Mar 2020, In : MycoKeys. 65, p. 49-99 51 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
CRISPR/Cas9 technology enables the development of the filamentous ascomycete fungus Penicillium subrubescens as a new industrial enzyme producer
Salazar-Cerezo, S., Kun, R. S., de Vries, R. P. & Garrigues, S., Feb 2020, In : Enzyme and microbial technology. 133, p. 109463Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Cytospora (Diaporthales) in China
Fan, X., Bezerra, J. D. P., Tian, C-M. & Crous, P. W., Dec 2020, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. 45, p. 1-45Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Human blastomycosis in South Africa caused by Blastomyces percursus and Blastomyces africanus sp. nov., 1967 - 2014
Maphanga, T. G., Birkhead, M., Muñoz, J. F., Allam, M., Zulu, T. G., Cuomo, C. A., Schwartz, I. S., Ismail, A., Naicker, S. D., Mpembe, R. S., Corcoran, C., de Hoog, S., Kenyon, C., Borman, A. M., Frean, J. A. & Govender, N. P., 02 Jan 2020, In : Journal of Clinical Microbiology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Madurella real-time PCR, a novel approach for eumycetoma diagnosis
Arastehfar, A., Lim, W., Daneshnia, F., van de Sande, W. W. J., Fahal, A. H., Desnos-Ollivier, M., de Hoog, G. S., Boekhout, T. & Ahmed, S. A., 15 Jan 2020, In : PLoS Neglected Tropical Diseases. 14, 1, p. e0007845Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens
Daly, P., Peng, M., Casado López, S., Lipzen, A., Ng, V., Singan, V. R., Wang, M., Grigoriev, I. V., de Vries, R. P. & Mäkelä, M. R., 20 Jan 2020, In : Journal of Biotechnology. 308, p. 35-39 5 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Polyphasic identification of three new species in Alternaria section Infectoriae causing human cutaneous infection
Iturrieta-González, I., Pujol, I., Iftimie, S., García, D., Morente, V., Queralt, R., Guevara-Suarez, M., Alastruey-Izquierdo, A., Ballester, F., Hernández-Restrepo, M. & Gené, J., 01 Feb 2020, In : Mycoses. 63, 2, p. 212-224 13 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Recombinant production and characterization of six novel GH27 and GH36 α-galactosidases from Penicillium subrubescens and their synergism with a commercial mannanase during the hydrolysis of lignocellulosic biomass
Coconi Linares, N., Dilokpimol, A., Stålbrand, H., Mäkelä, M. R. & de Vries, R. P., Jan 2020, In : Bioresource Technology. 295, p. 122258Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
The Genera of Fungi - G5: Arthrinium, Ceratosphaeria, Dimerosporiopsis, Hormodochis, Lecanostictopsis, Lembosina, Neomelanconium, Phragmotrichum, Pseudomelanconium, Rutola, and Trullula
Crous, P. W., Schumacher, R. K., Wood, A. R. & Groenewald, J. Z., Jun 2020, In : Fungal Systematics and Evolution. 5, p. 77-98 22 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
2019
23 years of research on Teratosphaeria leaf blight of Eucalyptus
Andjic, V., Carnegie, A. J., Pegg, G. S., Hardy, G. E. S. J., Maxwell, A., Crous, P. W., Pérez, C., Wingfield, M. J. & Burgess, T. I., Jul 2019, In : Forest Ecology and Management. 443, p. 19 - 27Research output: Contribution to journal/periodical › Article › Scientific › peer-review
A Comparison of Isolation Methods for Black Fungi Degrading Aromatic Toxins
Quan, Y., van den Ende, B. G., Shi, D., Prenafeta-Boldú, F. X., Liu, Z., Al-Hatmi, A. M. S., Ahmed, S. A., Verweij, P. E., Kang, Y. & de Hoog, S., Oct 2019, In : Mycopathologia. 184, 5, p. 653-660 8 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
A new perspective on fungal metabolites: identification of bioactive compounds from fungi using zebrafish embryogenesis as read-out
Hoeksma, J., Misset, T., Wever, C., Kemmink, J., Kruijtzer, J., Versluis, K., Liskamp, R. M. J., Boons, G. J., Heck, A. J. R., Boekhout, T. & den Hertog, J., 26 Nov 2019, In : Scientific Reports. 9, 1, p. 17546Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Anidulafungin Susceptibility Testing of Candida glabrata Isolates from Blood Cultures by the MALDI Biotyper Antibiotic (Antifungal) Susceptibility Test Rapid Assay
Vatanshenassan, M., Arastehfar, A., Boekhout, T., Berman, J., Lass-Flörl, C., Sparbier, K. & Kostrzewa, M., Sep 2019, In : Antimicrobial Agents and Chemotherapy. 63, 9Research output: Contribution to journal/periodical › Article › Scientific › peer-review
A novel diagnosis scoring model to predict invasive pulmonary aspergillosis in the intensive care unit
Rozaliyani, A., Sedono, R., Jusuf, A., Rumende, C. M., Aniwidyaningsih, W., Burhan, E., Prasenohadi, P., Handayani, D., Yunihastuti, E., Siagian, F. E., Jayusman, A. M., Rusli, A., Sungkar, S., Prihartono, J., Hagen, F., Meis, J. F. & Wahyuningsih, R., Feb 2019, In : Saudi medical journal. 40, 2, p. 140-146 7 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Antifungal susceptibility, genotyping, resistance mechanism, and clinical profile of Candida tropicalis blood isolates
Arastehfar, A., Daneshnia, F., Hafez, A., Khodavaisy, S., Najafzadeh, M-J., Charsizadeh, A., Zarrinfar, H., Salehi, M., Shahrabadi, Z. Z., Sasani, E., Zomorodian, K., Pan, W., Hagen, F., Ilkit, M., Kostrzewa, M. & Boekhout, T., 12 Dec 2019, In : Medical Mycology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
A Revised Species Concept for Opportunistic Mucor Species Reveals Species-Specific Antifungal Susceptibility Profiles
Wagner, L., de Hoog, S., Alastruey-Izquierdo, A., Voigt, K., Kurzai, O. & Walther, G., Aug 2019, In : Antimicrobial Agents and Chemotherapy. 63, 8Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Athelia rolfsii (= Sclerotium rolfsii) infects banana in the Philippines
Acabal, B. D., Dalisay, T. U., Groenewald, J. Z., Crous, P. W. & Cumagun, C. J. R., Dec 2019, In : Australasian Plant Disease Notes. 14, 1, p. 10 1 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
A tribute to Cletus P. Kurtzman (1938-2017)
Boekhout, T., 01 Aug 2019, In : FEMS Yeast Research. 19, 5Research output: Contribution to journal/periodical › Article › Professional
Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon? (vol 9, 516, 2018)
Zoran, T., Sartori, B., Sappl, L., Aigner, M., Sanchez-Reus, F., Rezusta, A., Chowdhary, A., Taj-Aldeen, S. J., Arendrup, M. C., Oliveri, S., Kontoyiannis, D. P., Alastruey-Izquierdo, A., Lagrou, K., Lo Cascio, G., Meis, J. F., Buzina, W., Farina, C., Drogari-Apiranthitou, M., Grancini, A., Tortorano, A. M. & 34 others, , 14 Jan 2019, In : Frontiers in Microbiology. 9Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Back to the roots: a reappraisal of Neocosmospora
Sandoval-Denis, M., Lombard, L. & Crous, P. W., Dec 2019, In : Persoonia. 43, p. 90-185 96 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Botryosphaeriaceae associated with Acacia heterophylla (La Réunion) and Acacia koa (Hawaii)
Jami, F., Marincowitz, S., Slippers, B., Crous, P. W., Le Roux, J. J., Richardson, D. M. & Wingfield, M. J., 20 Jul 2019, In : Fungal Biology. 123, 11, p. 783-790 8 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Candida auris Identification and Rapid Antifungal Susceptibility Testing Against Echinocandins by MALDI-TOF MS
Vatanshenassan, M., Boekhout, T., Meis, J. F., Berman, J., Chowdhary, A., Ben-Ami, R., Sparbier, K. & Kostrzewa, M., 18 Feb 2019, In : Frontiers in cellular and infection microbiology. 9, p. 20Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Candida xylosifermentans sp. nov., a D-xylose-fermenting yeast species isolated in Thailand
Kaewwichian, R., Khunnamwong, P., Am-In, S., Jindamorakot, S., Groenewald, M. & Limtong, S., Sep 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 9, p. 2674-2680Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Case report: chronic relapsing cryptococcal meningitis in a patient with low mannose-binding lectin and a low naïve CD4 cell count
Wagemakers, A., Ang, C. W., Hagen, F., Bot, J. C. J., Bomers, M. K., Visser, M. C. & van Dijk, K., 15 Oct 2019, In : BMC Infectious Diseases. 19, 1, p. 846Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Changing Concepts and Current Definition of Majocchi's Granuloma
Durdu, M., Kandemir, H., Ilkit, M. & de Hoog, G. S., 11 Jul 2019, In : Mycopathologia.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Changing the game: resolving systematic issues in key Fusarium species complexes
Lombard, L., Sandoval-Denis, M., Cai, L. & Crous, P. W., 18 Dec 2019, In : Persoonia: Molecular Phylogeny and Evolution of Fungi. 43, p. i-ii 2 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Chapter F of the International Code of Nomenclature for algae, fungi, and plants as approved by the 11th International Mycological Congress, San Juan, Puerto Rico, July 2018
May, T. W., Redhead, S. A., Bensch, K., Hawksworth, D. L., Lendemer, J., Lombard, L. & Turland, N. J., Dec 2019, In : IMA Fungus. 10, 1, 14 p., 21.Research output: Contribution to journal/periodical › Article › Professional
Open Access
Chromatin-dependent regulation of secondary metabolite biosynthesis in fungi: is the picture complete?
Collemare, J. & Seidl, M. F., 20 Jun 2019, In : FEMS Microbiology Reviews.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger
Lubbers, R. J. M., Dilokpimol, A., Navarro, J., Peng, M., Wang, M., Lipzen, A., Ng, V., Grigoriev, I. V., Visser, J., Hildén, K. S. & de Vries, R. P., 2019, In : Frontiers in bioengineering and biotechnology. 7, p. 249Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Clinical insights and epidemiology of central nervous system infection due to Cryptococcus neoformans/gattii species complexes: A prospective study from South India
Lahiri, S., Manjunath, N., Bhat, M., Hagen, F., Bahubali, V. H., Palaniappan, M., Maji, S. & Chandrashekar, N., 03 Oct 2019, In : Medical Mycology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Colletotrichum species associated with anthracnose of Pyrus spp. in China
Fu, M., Crous, P. W., Bai, Q., Zhang, P. F., Xiang, J., Guo, Y. S., Zhao, F. F., Yang, M. M., Hong, N., Xu, W. X. & Wang, G. P., Jul 2019, In : Persoonia. 42, 1, p. 1-35 35 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation
Daly, P., Peng, M., Mitchell, H. D., Kim, Y-M., Ansong, C., Brewer, H., de Gijsel, P., Lipton, M. S., Markillie, L. M., Nicora, C. D., Orr, G., Wiebenga, A., Hildén, K. S., Kabel, M. A., Baker, S. E., Mäkelä, M. R. & de Vries, R. P., 25 Dec 2019, In : Environmental Microbiology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Community dynamics of Neocallimastigomycetes in the rumen of yak feeding on wheat straw revealed by different primer sets
Wang, X-W., Benoit, I., Groenewald, J. Z., Houbraken, J., Dai, X., Peng, M., Yang, X., Han, D-Y., Gao, C. & Guo, L-D., Oct 2019, In : Fungal Ecology. 41, p. 34 - 44Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Comparative pathogenicity of opportunistic black yeasts in Aureobasidium
Wang, M., Danesi, P., James, T. Y., Al-Hatmi, A. M. S., Najafzadeh, M. J., Dolatabadi, S., Ming, C., Liou, G-Y., Kang, Y. & de Hoog, S., Sep 2019, In : Mycoses. 62, 9, p. 803-811 9 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries
Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F. & Boekhout, T., 2019, In : Frontiers in cellular and infection microbiology. 9, p. 21Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Corrigendum: Naganishia qatarensis sp. nov., a novel basidiomycetous yeast species from a hypersaline marine environment in Qatar
Fotedar, R., Kolecka, A., Boekhout, T., Fell, J. W., Anand, A., Al Malaki, A., Zeyara, A. & Al Marri, M., Mar 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 3, p. 873Research output: Contribution to journal/periodical › Article › Scientific
Corrigendum: Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries
Arastehfar, A., Daneshnia, F., Kord, M., Roudbary, M., Zarrinfar, H., Fang, W., Hashemi, S. J., Najafzadeh, M. J., Khodavaisy, S., Pan, W., Liao, W., Badali, H., Rezaie, S., Zomorodian, K., Hagen, F. & Boekhout, T., 2019, In : Frontiers in cellular and infection microbiology. 9, p. 176Research output: Contribution to journal/periodical › Article › Scientific
Open Access
Corrigendum: Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases
Arastehfar, A., Fang, W., Al-Hatmi, A. M. S., Afsarian, M. H., Daneshnia, F., Bakhtiari, M., Sadati, S. K., Badali, H., Khodavaisy, S., Hagen, F., Liao, W., Pan, W., Zomorodian, K. & Boekhout, T., 01 Nov 2019, In : Medical Mycology. 57, 8, p. e12Research output: Contribution to journal/periodical › Article › Scientific
Open Access
Corrigendum: Molecular characterization and antifungal susceptibility testing of Candida nivariensis from blood samples - an Iranian multicentre study and a review of the literature
Arastehfar, A., Daneshnia, F., Salehi, M-R., Zarrinfar, H., Khodavaisy, S., Haas, P-J., Roudbary, M., Najafzadeh, M-J., Zomorodian, K., Charsizadeh, A., Brouwer, C., Pan, W., Hagen, F. & Boekhout, T., Nov 2019, In : Journal of Medical Microbiology. 68, 11, p. 1695Research output: Contribution to journal/periodical › Article › Scientific
Open Access
cyp51A Mutations, Extrolite Profiles, and Antifungal Susceptibility in Clinical and Environmental Isolates of the Aspergillus viridinutans Species Complex
Talbot, J. J., Frisvad, J. C., Meis, J. F., Hagen, F., Verweij, P. E., Hibbs, D. E., Lai, F., Groundwater, P. W., Samson, R. A., Kidd, S. E., Barrs, V. R. & Houbraken, J., Nov 2019, In : Antimicrobial Agents and Chemotherapy. 63, 11Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf
Fotedar, R., Fell, J. W., Boekhout, T., Kolecka, A., Zeyara, A., Kaul, R., Malki, A. A. & Marri, M. A., Mar 2019, In : International Journal of Systematic and Evolutionary Microbiology. 69, 3, p. 839-845 7 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Database establishment for the secondary fungal DNA barcode translational elongation factor 1 alpha (TEF1 alpha)
Meyer, W., Irinyi, L., Minh Thuy Vi Hoang, Robert, V., Garcia-Hermoso, D., Desnos-Ollivier, M., Yurayart, C., Tsang, C-C., Lee, C-Y., Woo, P. C. Y., Pchelin, I. M., Uhrlass, S., Nenoff, P., Chindamporn, A., Chen, S., Hebert, P. D. N., Sorrell, T. C., Halliday, C., Arthur, I., Moretti, M. L. & 27 others, , Mar 2019, In : Genome. 62, 3, p. 160-169Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Discovery of Novel p-Hydroxybenzoate-m-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus Aspergillus niger
Lubbers, R. J. M., Dilokpimol, A., Peng, M., Visser, J., Makela, M. R., Hilden, K. S. & de Vries, R. P., 02 Dec 2019, In : ACS Sustainable Chemistry & Engineering. 7, 23, p. 19081-19089Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Disseminated Mycosis by Arthrocladium fulminans Jeopardizing a Patient with GATA2 Deficiency
Egenlauf, B., Schuhmann, M., Giese, T., Junghanss, T., Stojkovic, M., Tintelnot, K., de Hoog, S., Greil, J., Richter, E., Vehresschild, M., Heussel, C. P., Herth, F. J. F. & Kreuter, M., May 2019, In : Respiration; international review of thoracic diseases. 97, 5, p. 472-475 4 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Diversity of Tilletiopsis-Like Fungi in Exobasidiomycetes (Ustilaginomycotina) and Description of Six Novel Species
Richter, C., Yurkov, A. M., Boekhout, T. & Stadler, M., 22 Nov 2019, In : Frontiers in Microbiology. 10, p. 2544Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Draft Genome Sequence of the Wood-Staining Ascomycete Chlorociboria aeruginascens DSM 107184
Büttner, E., Liers, C., Gebauer, A. M., Collemare, J., Navarro-Muñoz, J. C., Hofrichter, M. & Kellner, H., 25 Apr 2019, In : MICROBIOLOGY RESOURCE ANNOUNCEMENTS. 8, 17Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Draft Genome Sequences of Three Monokaryotic Isolates o the White-Rot Basidiomycete Fungus Dichomitus squalens
Lopez, S. C., Peng, M., Daly, P., Andreopoulos, B., Pangilinan, J., Lipzen, A., Riley, R., Ahrendt, S., Ng, V., Barry, K., Daum, C., Grigoriev, I. V., Hilden, K. S., Makela, M. R. & de Vries, R. P., May 2019, In : MICROBIOLOGY RESOURCE ANNOUNCEMENTS. 8, 18Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access
Dwiroopa punicae sp. nov. (Dwiroopaceae fam. nov., Diaporthales), associated with leaf spot and fruit rot of pomegranate (Punica granatum)
Xavier, K. V., KC, A. N., Crous, P. W., Groenewald, J. Z. & Vallad, G. E., Dec 2019, In : Fungal Systematics and Evolution. 4, 1, p. 33-41 9 p.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access