Westerdijk Fungal Biodiversity Institute

2022

Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis

Hare, R. K., Arastehfar, A., Rosendahl, S., Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, M. C., 12 Feb 2022, In: Journal of Fungi. 8, 2

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Cutaneous disseminated sporotrichosis in immunocompetent patient: Case report and literature review

Queiroz-Telles, F., Cognialli, R. C., Salvador, G. L., Moreira, G. A., Herkert, P. F. & Hagen, F., 11 May 2022, In: Medical Mycology Case Reports. 36, p. 31-34 4 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565

Boden, S., Morio, F., Zhou, M., Gerrits van den Ende, B. & Hagen, F., 10 May 2022, In: Mycopathologia.

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Open Access

Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

Buijs, V. A., Groenewald, J. Z., Haridas, S., LaButti, K. M., Lipzen, A., Martin, F. M., Barry, K., Grigoriev, I. V., Crous, P. W. & Seidl, M. F., 01 May 2022, In: G3: Genes, Genomes, Genetics. 12, 5, jkac061.

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Open Access

Fusarium and allied fusarioid taxa (FUSA). 1

Crous, P. W., Sandoval-Denis, M., Groenewald, J. Z., Costa, M. M., van Iperen, A. L., Starink-Willemse, M., Hernández-Restrepo, M., Kandemir, H., Ulaszewski, B., de Boer, W., Abdel-Azeem, A. M., Abdollahzadeh, J., Akulov, A., Bakhshi, M., Bezerra, J. D. P., Bhunjun, C. S., Câmara, M. P. S., Chaverri, P., Vieira, W. A. S., Decock, C. A. & 40 others, Gaya, E., Gené, J., Guarro, J., Gramaje, D., Grube, M., Gupta, V. K., Guarnaccia, V., Hill, R., Hirooka, Y., Hyde, K. D., Jayawardena, R. S., Jeewon, R., Jurjević, Ž., Korsten, L., Lamprecht, S. C., Lombard, L., Maharachchikumbura, S. S. N., Polizzi, G., Rajeshkumar, K. C., Salgado-Salazar, C., Shang, Q-J., Shivas, R. G., Summerbell, R. C., Sun, G. Y., Swart, W. J., Tan, Y. P., Vizzini, A., Xia, J. W., Zare, R., González, C. D., Iturriaga, T., Savary, O., Coton, M., Coton, E., Jany, J-L., Liu, C., Zeng, Z-Q., Zhuang, W-Y., Yu, Z-H. & Thines, M., 01 Jun 2022, In: Fungal Systematics and Evolution. 9, p. 161-200 40 p.

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Open Access

Fusarium and allied genera from China: species diversity and distribution

Wang, M. M., Crous, P. W., Sandoval-Denis, M., Han, S. L., Liu, F., Liang, J. M., Duan, W. J. & Cai, L., 30 Jun 2022, In: Persoonia. 48, 1, p. 1-53 53 p.

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Open Access

Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome

van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J. & van den Wijngaard, R. M., 30 Mar 2022, In: Scientific Reports. 12, 1, p. 5391

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Open Access

Glycoside Hydrolase family 30 harbors fungal subfamilies with distinct polysaccharide specificities

Li, X., Kouzounis, D., Kabel, M. A., de Vries, R. P. & Dilokpimol, A., 22 Mar 2022, In: New Biotechnology. 67, p. 32-41 10 p.

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Open Access

Paraphoma garibaldii sp. nov. causing leaf spot disease of Campanula rapunculoides in Italy

Guarnaccia, V., Martino, I., Tabone, G., Crous, P. W. & Gullino, M. L., 01 Jun 2022, In: Fungal Systematics and Evolution. 9, p. 19-26 8 p.

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Open Access

Re-evaluation of Sympoventuriaceae

Wei, T. P., Zhang, H., Zeng, X. Y., Crous, P. W. & Jiang, Y. L., 30 Jun 2022, In: Persoonia. 48, 1, p. 219-260 42 p.

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Open Access

Whole genome sequencing and phylogenomic analysis show support for the splitting of genus Pythium

Nguyen, H. D. T., Dodge, A., Dadej, K., Rintoul, T. L., Ponomareva, E., Martin, F. N., de Cock, A. W. A. M., Levesque, C. A., Redhead, S. A. & Spies, C. F. J., 04 May 2022, In: Mycologia. 114, 3, p. 501-515

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Open Access

Xylitol production from plant biomass by Aspergillus niger through metabolic engineering

Meng, J., Chroumpi, T., Mäkelä, M. R. & de Vries, R. P., Jan 2022, In: Bioresource Technology. 344, Pt A, p. 126199

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Open Access

2021

A core of rhizosphere bacterial taxa associates with two of the world’s most isolated plant congeners

Le Roux, J. J., Crous, P. W., Kamutando, C. N., Richardson, D. M., Strasberg, D., Wingfield, M. J., Wright, M. G. & Valverde, A., 01 Sep 2021, In: Plant and Soil. 468, 1, p. 277-294 18 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

A genome-scale phylogeny of the kingdom Fungi

Li, Y., Steenwyk, J. L., Chang, Y., Wang, Y., James, T. Y., Stajich, J. E., Spatafora, J. W., Groenewald, M., Dunn, C. W., Hittinger, C. T., Shen, X-X. & Rokas, A., 26 Apr 2021, In: Current Biology. 31, 8, p. 1653-1665.e5

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

A new duplex PCR assay for the rapid screening of mating-type idiomorphs of pathogenic Sporothrix species

de Carvalho, J. A., Pinheiro, B. G., Hagen, F., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., de Camargo, Z. P. & Rodrigues, A. M., Oct 2021, In: Fungal Biology.

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Open Access

A re-evaluation of Penicillium section Canescentia, including the description of five new species

Visagie, C. M., Frisvad, J. C., Houbraken, J., Visagie, A., Samson, R. A. & Jacobs, K., Jun 2021, In: Persoonia. 46, p. 163-187

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Open Access

Aspergillus fumigatus and aspergillosis: From basics to clinics

Arastehfar, A., Carvalho, A., Houbraken, J., Lombardi, L., Garcia-Rubio, R., Jenks, J. D., Rivero-Menendez, O., Aljohani, R., Jacobsen, I. D., Berman, J., Osherov, N., Hedayati, M. T., Ilkit, M., James-Armstrong, D., Gabaldón, T., Meletiadis, J., Kostrzewa, M., Pan, W., Lass-Flörl, C., Perlin, D. S. & 1 others, Hoenigl, M., 01 Sep 2021, In: Studies in Mycology. 100, 100115

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Open Access

Aspergillus niger uses the peroxisomal CoA-dependent β-oxidative genes to degrade the hydroxycinnamic acids caffeic acid, ferulic acid, and p-coumaric acid

Lubbers, R. J. M., Dilokpimol, A., Visser, J. & de Vries, R. P., May 2021, In: Applied Microbiology and Biotechnology. 105, 10, p. 4199-4211 13 p.

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Open Access

A taxonomic review of Penicillium section Charlesia

Sun, B-D., Visagie, C. M., Chen, A. J. & Houbraken, J., Nov 2021, In: Mycological Progress. 20, 11, p. 1383-1397

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Open Access

Author Correction: Fungal taxonomy and sequence-based nomenclature

Lücking, R., Aime, M. C., Robbertse, B., Miller, A. N., Aoki, T., Ariyawansa, H. A., Cardinali, G., Crous, P. W., Druzhinina, I. S., Geiser, D. M., Hawksworth, D. L., Hyde, K. D., Irinyi, L., Jeewon, R., Johnston, P. R., Kirk, P. M., Malosso, E., May, T. W., Meyer, W., Nilsson, H. R. & 8 others, Öpik, M., Robert, V., Stadler, M., Thines, M., Vu, D., Yurkov, A. M., Zhang, N. & Schoch, C. L., 27 May 2021, In: Nature Microbiology.

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Open Access

A world-wide analysis of reduced sensitivity to DMI fungicides in the banana pathogen Pseudocercospora fijiensis

Chong, P., Essoh, J. N., Arango Isaza, R. E., Keizer, P., Stergiopoulos, I., Seidl, M. F., Guzman, M., Sandoval, J., Verweij, P. E., Scalliet, G., Sierotzski, H., de Lapeyre de Bellaire, L., Crous, P. W., Carlier, J., Cros, S., Meijer, H. J. G., Peralta, E. L. & Kema, G. H. J., 25 Mar 2021, In: Pest Management Science. 77, 7, p. 3273-3288 16 p.

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Open Access

Basidiobolus omanensis sp. nov. Causing Angioinvasive Abdominal Basidiobolomycosis

Al-Hatmi, A. M. S., Balkhair, A., Al-Busaidi, I., Sandoval-Denis, M., Al-Housni, S., Ba Taher, H., Al Shehhi, A. H., Raniga, S., Al Shaibi, M., Al Siyabi, T., Meis, J. F., de Hoog, G. S., Al-Rawahi, A., Al Muharrmi, Z., Al-Harrasi, A. & Al Adawi, B., 12 Aug 2021, In: Journal of Fungi. 7, 8

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Open Access

Blocking utilization of major plant biomass polysaccharides leads Aspergillus niger towards utilization of minor components

Kun, R. S., Garrigues, S., Di Falco, M., Tsang, A. & de Vries, R. P., Jul 2021, In: Microbial Biotechnology. 14, 4, p. 1683-1698 16 p.

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Open Access

Carbon utilization and growth-inhibition of citrus-colonizing Phyllosticta species

Buijs, V. A., Zuijdgeest, X. C. L., Groenewald, J. Z., Crous, P. W. & de Vries, R. P., Oct 2021, In: Fungal Biology. 125, 10, p. 815-825 11 p.

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Open Access

Characterization of d-xylose reductase, XyrB, from Aspergillus niger

Terebieniec, A., Chroumpi, T., Dilokpimol, A., Aguilar-Pontes, M. V., Mäkelä, M. R. & de Vries, R. P., Jun 2021, In: Biotechnology reports (Amsterdam, Netherlands). 30, p. e00610

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Open Access

Chromoblastomycosis in Latin America and the Caribbean: epidemiology over the past 50 years

Guevara, A., Siqueira, N. P., Nery, A. F., Cavalcante, L. R. D. S., Hagen, F. & Hahn, R. C., 12 Oct 2021, In: Medical Mycology.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Citizen science project reveals novel fusarioid fungi (Nectriaceae, Sordariomycetes) from urban soils

Crous, P. W., Hernández-Restrepo, M., van Iperen, A. L., Starink-Willemse, M., Sandoval-Denis, M. & Groenewald, J. Z., Oct 2021, In: Fungal Systematics and Evolution. 8, p. 101–127

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Open Access

Colletotrichum species causing anthracnose of Citrus in Australia

Wang, W., de Silva, D. D., Moslemi, A., Edwards, J., Ades, P. K., Crous, P. W. & Taylor, P. W. J., 12 Jan 2021, In: Journal of Fungi. 7, 1, 26 p., 47.

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Open Access

Comparative analysis of Malassezia furfur mitogenomes and the development of a mitochondria-based typing approach

Theelen, B., Christinaki, A. C., Dawson, T. L., Boekhout, T. & Kouvelis, V. N., 12 Oct 2021, In: FEMS Yeast Research. 21, 7

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Open Access

Comparison of PCR-RFLP with 21-plex PCR and rDNA Sequencing for Identification of Clinical Yeast Isolates

Kord, M., Elmimoghaddam, A., Hashemi, S. J., Reziae, S., Daie Ghazvini, R., Salehi, M., Abdollahi, A., Ahmadi, A., Getso, M. I., Boekhout, T. & Khodavaisy, S., 04 Jan 2021, In: Mycopathologia.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Correction to: A core of rhizosphere bacterial taxa associates with two of the world’s most isolated plant congeners

Le Roux, J. J., Crous, P. W., Kamutando, C. N., Richardson, D. M., Strasberg, D., Wingfield, M. J., Wright, M. G. & Valverde, A., 06 Oct 2021, In: Plant and Soil. 469, 1, p. 525 1 p.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles (Fungal Diversity, (2020), 105, 1, (1-16), 10.1007/s13225-020-00466-2)

Põlme, S., Abarenkov, K., Henrik Nilsson, R., Lindahl, B. D., Clemmensen, K. E., Kauserud, H., Nguyen, N., Kjøller, R., Bates, S. T., Baldrian, P., Frøslev, T. G., Adojaan, K., Vizzini, A., Suija, A., Pfister, D., Baral, H. O., Järv, H., Madrid, H., Nordén, J., Liu, J. K. & 108 others, Pawlowska, J., Põldmaa, K., Pärtel, K., Runnel, K., Hansen, K., Larsson, K. H., Hyde, K. D., Sandoval-Denis, M., Smith, M. E., Toome-Heller, M., Wijayawardene, N. N., Menolli, N., Reynolds, N. K., Drenkhan, R., Maharachchikumbura, S. S. N., Gibertoni, T. B., Læssøe, T., Davis, W., Tokarev, Y., Corrales, A., Soares, A. M., Agan, A., Machado, A. R., Argüelles-Moyao, A., Detheridge, A., de Meiras-Ottoni, A., Verbeken, A., Dutta, A. K., Cui, B. K., Pradeep, C. K., Marín, C., Stanton, D., Gohar, D., Wanasinghe, D. N., Otsing, E., Aslani, F., Griffith, G. W., Lumbsch, T. H., Grossart, H. P., Masigol, H., Timling, I., Hiiesalu, I., Oja, J., Kupagme, J. Y., Geml, J., Alvarez-Manjarrez, J., Ilves, K., Loit, K., Adamson, K., Nara, K., Küngas, K., Rojas-Jimenez, K., Bitenieks, K., Irinyi, L., Nagy, L. G., Soonvald, L., Zhou, L. W., Wagner, L., Aime, M. C., Öpik, M., Mujica, M. I., Metsoja, M., Ryberg, M., Vasar, M., Murata, M., Nelsen, M. P., Cleary, M., Samarakoon, M. C., Doilom, M., Bahram, M., Hagh-Doust, N., Dulya, O., Johnston, P., Kohout, P., Chen, Q., Tian, Q., Nandi, R., Amiri, R., Perera, R. H., dos Santos Chikowski, R., Mendes-Alvarenga, R. L., Garibay-Orijel, R., Gielen, R., Phookamsak, R., Jayawardena, R. S., Rahimlou, S., Karunarathna, S. C., Tibpromma, S., Brown, S. P., Sepp, S. K., Mundra, S., Luo, Z. H., Bose, T., Vahter, T., Netherway, T., Yang, T., May, T., Varga, T., Li, W., Coimbra, V. R. M., de Oliveira, V. R. T., de Lima, V. X., Mikryukov, V. S., Lu, Y., Matsuda, Y., Miyamoto, Y., Kõljalg, U. & Tedersoo, L., 01 Mar 2021, In: Fungal Diversity. 107, 1, p. 129-132 4 p.

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Open Access

CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner

Peng, M., Khosravi, C., Lubbers, R. J. M., Kun, R. S., Aguilar Pontes, M. V., Battaglia, E., Chen, C., Dalhuijsen, S., Daly, P., Lipzen, A., Ng, V., Yan, J., Wang, M., Visser, J., Grigoriev, I. V., Mäkelä, M. R. & de Vries, R. P., Dec 2021, In: Cell surface (Amsterdam, Netherlands). 7, p. 100050

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

Cryptococcosis and Cryptococcus

Francisco, E. C., de Jong, A. W. & Hagen, F., 05 Jul 2021, In: Mycopathologia.

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Open Access

Cryptococcus bacillisporus causing cryptococcoma of the beak of an African grey parrot (Psittacus erithacus), Portugal

Silva, C., Juan-Sallés, C., Mendes, J., Mendes, A., Ruivo, M., Abad, J. L., Hagen, F. & Colom, M. F., Dec 2021, In: Medical Mycology Case Reports. 34, p. 8-12 5 p.

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Open Access

Delimitation and phylogeny of Dictyochaeta, and introduction of Achrochaeta and Tubulicolla, genera nova

Réblová, M., Nekvindová, J., Kolařík, M. & Hernández-Restrepo, M., 18 Feb 2021, In: Mycologia. 113, 2, p. 390-433 44 p.

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Development and Analysis of qPCR for the Identification of Arthroconidial Yeasts of the Genus Magnusiomyces

Kaplan, E., Aktaş, D., Döğen, A., Hilmioğlu-Polat, S., Gümral, R., Hagen, F., Ilkit, M. & de Hoog, G. S., Mar 2021, In: Mycopathologia. 186, 1, p. 41-51 11 p.

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Development and evaluation of a multiplex qPCR assay for rapid diagnostics of emerging sporotrichosis

Della Terra, P. P., Gonsales, F. F., de Carvalho, J. A., Hagen, F., Kano, R., Bonifaz, A., Camargo, Z. P. D. & Rodrigues, A. M., 23 Oct 2021, In: Transboundary and emerging diseases.

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Discovery and Functional Analysis of a Salicylic Acid Hydroxylase from Aspergillus niger

Lubbers, R. J. M., Dilokpimol, A., Visser, J., Hilden, K. S., Makela, M. R. & de Vries, R. P., Mar 2021, In: Applied and Environmental Microbiology. 87, 6, p. e02701-20

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Open Access

Diversity and evolution of Entomocorticium (Russulales, Peniophoraceae), a genus of bark beetle mutualists derived from free-living, wood rotting Peniophora

Araújo, J. P. M., Li, Y., Six, D., Rajchenberg, M., Smith, M. E., Johnson, A. J., Klepzig, K. D., Crous, P. W., Leal-Dutra, C. A., Skelton, J., Adams, S. N. & Hulcr, J., 06 Dec 2021, In: Journal of Fungi. 7, 12, 26 p., 1043.

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Open Access

Domestic Birds as Source of Cryptococcus deuterogattii (AFLP6/VGII): Potential Risk for Cryptococcosis

Siqueira, N. P., Favalessa, O. C., Maruyama, F. H., Dutra, V., Nakazato, L., Hagen, F. & Hahn, R. C., 11 Nov 2021, In: Mycopathologia.

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Open Access

Draft Genome Sequences of Fungi Isolated from the International Space Station during the Microbial Tracking-2 Experiment

Simpson, A. C., Urbaniak, C., Bateh, J. R., Singh, N. K., Wood, J. M., Debieu, M., O'Hara, N. B., Houbraken, J., Mason, C. E. & Venkateswaran, K., Sep 2021, In: Microbiology Resource Announcements. 10, 37

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Open Access

Draft Genome Sequences of Two Cadophora Strains Isolated from Water and a Nonalcoholic Beverage Ingredient Auteurs

Stefanovic, E., Scully, C., Roader, J., Murphy, F., Houbraken, J. & Vu, D., 01 Jul 2021, In: Genome Announcements. 10, 26

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Open Access

Emergence of Candida auris in Brazil in a COVID-19 Intensive Care Unit

de Almeida, J. N., Francisco, E. C., Hagen, F., Brandão, I. B., Pereira, F. M., Presta Dias, P. H., de Miranda Costa, M. M., de Souza Jordão, R. T., de Groot, T. & Colombo, A. L., 17 Mar 2021, In: Journal of Fungi. 7, 3

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Open Access

Environmental Candida auris and the Global Warming Emergence Hypothesis

Casadevall, A., Kontoyiannis, D. P. & Robert, V., 16 Mar 2021, In: mBio. 12, 2

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Open Access

Evaluating species in Botryosphaeriales

Zhang, W., Groenewald, J. Z., Lombard, L., Schumacher, R. K., Phillips, A. J. L. & Crous, P. W., Jun 2021, In: Persoonia: Molecular Phylogeny and Evolution of Fungi. 46, 1, p. 63-115 53 p.

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Open Access

Exploring genetic diversity, population structure, and phylogeography in Paracoccidioides species using AFLP markers

Roberto, T. N., de Carvalho, J. A., Beale, M. A., Hagen, F., Fisher, M. C., Hahn, R. C., de Camargo, Z. P. & Rodrigues, A. M., 01 Dec 2021, In: Studies in Mycology. 100

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Extreme diversification driven by parallel events of massive loss of heterozygosity in the hybrid lineage of Candida albicans

Mixão, V., Saus, E., Boekhout, T. & Gabaldón, T., 09 Feb 2021, In: Genetics. 217, 2

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Open Access

Four-year safety and effectiveness data from patients with multiple sclerosis treated with fingolimod: The Spanish GILENYA registry

Meca-Lallana, J. E., Oreja-Guevara, C., Munoz, D., Olascoaga, J., Pato, A., Ramio-Torrenta, L., Meca-Lallana, V., Hernandez, M. A., Marzo, M. E., Alvarez- Cermeno, J. C., Rodriguez-Antigueedad, A., Montalban, X. & Fernandez, O., 13 Oct 2021, In: PLoS One. 16, 10

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Open Access

Fungal Diversity and Aflatoxins in Maize and Rice Grains and Cassava-Based Flour (Pupuru) from Ondo State, Nigeria

Ekpakpale, D. O., Kraak, B., Meijer, M., Ayeni, K. I., Houbraken, J. & Ezekiel, C. N., Aug 2021, In: Journal of Fungi. 7, 635, p. 1-12 12 p.

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Open Access

Westerdijk Fungal Biodiversity Institute

Research output

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