Westerdijk Fungal Biodiversity Institute

Research output

Research output per year 1988 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2023

• 2517 Article
• 169 Chapter
• 105 Paper
• 50 Software
• 185 More
  • 50 PhD thesis
  • 43 Book
  • 30 Book/Film/Article review
  • 19 Abstract
  • 13 Contribution to conference proceedings
  • 9 Poster
  • 8 Other contribution
  • 5 Special issue (editorship)
  • 2 Report
  • 1 Editorial (disabled)
  • 1 Database
  • 1 Digital or Visual Products
  • 1 Online paper
  • 1 Web article
  • 1 Working paper/Discussion paper

Research output per year

Research output per year

Search results

• 2023

  A surprising finding: The curious case of a tongue lesion misdiagnosed as paracoccidioidomycosis

  Gerrits van den Ende, B., Rodrigues, A. M., Hahn, R. C. & Hagen, F., 27 Mar 2023, In: Revista Iberoamericana de Micologia. 40, 1, p. 10-14 5 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Paracoccidioides 100%
  • Paracoccidioidomycosis 97%
  • Diagnostic Errors 64%
  • Tongue 61%
  • Nanopores 16%

• Candida khanbhai sp. nov., a new clinically relevant yeast within the Candida haemulonii species complex

  de Jong, A. W., Al-Obaid, K., Mohd Tap, R., Gerrits van den Ende, B., Groenewald, M., Joseph, L., Ahmad, S. & Hagen, F., 03 Feb 2023, In: Medical Mycology. 61, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida 100%
  • Yeasts 78%
  • Invasive Fungal Infections 63%
  • Molecular Pathology 55%
  • Names 46%

• Comparing genomic variant identification protocols for Candida auris

  Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d'Enfert, C., Engelthaler, D. M., Eyre, D. W., Fisher, M. C., & 6 othersHagen, F., Meyer, W., Singh, G., Alastruey-Izquierdo, A., Litvintseva, A. P. & Cuomo, C. A., 13 Apr 2023, In: Microbial genomics. 9, 4

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida 100%
  • Single Nucleotide Polymorphism 81%
  • Practice Guidelines 36%
  • Disease Outbreaks 34%
  • Genome 26%

• Development of a Multiplex qPCR Assay for Fast Detection and Differentiation of Paracoccidioidomycosis Agents

  Pinheiro, B. G., Pôssa, A. P., Ricci, G., Nishikaku, A. S., Hagen, F., Hahn, R. C., Camargo, Z. P. D. & Rodrigues, A. M., 15 Mar 2023, In: Journal of Fungi.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• High-Throughput Microsatellite Markers Development for Genetic Characterization of Emerging Sporothrix Species

  Losada, L. C. D. M. L., Monteiro, R. C., Carvalho, J. A. D., Hagen, F., Fisher, M. C., Spruijtenburg, B., Meis, J. F., Groot, T. D., Gonçalves, S. S., Negroni, R., Kano, R., Bonifaz, A., Camargo, Z. P. D. & Rodrigues, A. M., 14 Mar 2023, In: Journal of Fungi.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• In vitro activity of isavuconazole against clinically relevant Trichosporon species: a comparative evaluation of EUCAST broth microdilution and MIC Test Strip methods

  02 Mar 2023, In: Journal of Antimicrobial Chemotherapy. 78, 3, p. 817-822 6 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • isavuconazole 100%
  • Trichosporon 88%
  • In Vitro Techniques 25%
  • posaconazole 23%
  • Voriconazole 21%

• MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters

  Terlouw, B. R., Blin, K., Navarro-Muñoz, J. C., Avalon, N. E., Chevrette, M. G., Egbert, S., Lee, S., Meijer, D., Recchia, M. J. J., Reitz, Z. L., van Santen, J. A., Selem-Mojica, N., Tørring, T., Zaroubi, L., Alanjary, M., Aleti, G., Aguilar, C., Al-Salihi, S. A. A., Augustijn, H. E., Avelar-Rivas, J. A., & 62 othersAvitia-Domínguez, L. A., Barona-Gómez, F., Bernaldo-Agüero, J., Bielinski, V. A., Biermann, F., Booth, T. J., Carrion Bravo, V. J., Castelo-Branco, R., Chagas, F. O., Cruz-Morales, P., Du, C., Duncan, K. R., Gavriilidou, A., Gayrard, D., Gutiérrez-García, K., Haslinger, K., Helfrich, E. J. N., van der Hooft, J. J. J., Jati, A. P., Kalkreuter, E., Kalyvas, N., Kang, K. B., Kautsar, S., Kim, W., Kunjapur, A. M., Li, Y-X., Lin, G-M., Loureiro, C., Louwen, J. J. R., Louwen, N. L. L., Lund, G., Parra, J., Philmus, B., Pourmohsenin, B., Pronk, L. J. U., Rego, A., Balaya Rex, D. A., Robinson, S., Rosas-Becerra, L. R., Roxborough, E. T., Schorn, M. A., Scobie, D. J., Singh, K. S., Sokolova, N., Tang, X., Udwary, D., Vigneshwari, A., Vind, K., Vromans, S. P. J. M., Waschulin, V., Williams, S. E., Winter, J. M., Witte, T. E., Xie, H., Yang, D., Yu, J., Zdouc, M., Zhong, Z., Collemare, J., Linington, R. G., Weber, T. & Medema, M. H., 2023, In: Nucleic Acids Research. 51, D1, p. D603-D610

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Multigene Family 100%
  • Databases 44%
  • Biological Products 36%
  • Crop Protection 34%
  • Biosynthetic Pathways 22%
  20 Downloads (Pure)

• Soil substrate source drives the microbes involved in the degradation of gelatin used as a biostimulant

  Costa, O. Y. A., Pijl, A., Houbraken, J., van Lith, W. & Kuramae, E. E., 01 Sept 2023, In: Applied Soil Ecology. 189, 104906.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • plant biostimulant 100%
  • Soil 96%
  • Gelatin 96%
  • gelatin 89%
  • substrate 61%
  3 Downloads (Pure)
• 2022

  Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples

  Nourrisson, C., Moniot, M., Lavergne, R-A., Robert, E., Bonnin, V., Hagen, F., Grenouillet, F., Cafarchia, C., Butler, G., Cassaing, S., Sabou, M., Le Pape, P., Poirier, P. & Morio, F., 06 Oct 2022, (E-pub ahead of print) In: Clinical Microbiology and Infection.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Fluconazole 100%
  • Candida 88%
  • Genetic Variation 83%
  • Cluster Analysis 77%
  • Candida parapsilosis 57%

• Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

  Bretagne, S., Sitbon, K., Desnos-Ollivier, M., Garcia-Hermoso, D., Letscher-Bru, V., Cassaing, S., Millon, L., Morio, F., Gangneux, J-P., Hasseine, L., Favennec, L., Cateau, E., Bailly, E., Moniot, M., Bonhomme, J., Desbois-Nogard, N., Chouaki, T., Paugam, A., Bouteille, B., Pihet, M., & 8 othersDalle, F., Eloy, O., Sasso, M., Demar, M., Mariani-Kurkdjian, P., Robert, V., Lortholary, O. & Dromer, F., 28 Jun 2022, In: mBio. 13, 3

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• A monograph of Aspergillus section Candidi

  Glässnerová, K., Sklenář, F., Jurjević, Ž., Houbraken, J., Yaguchi, T., Visagie, C. M., Gené, J., Siqueira, J. P. Z., Kubatova, A., Kolarik, M. & Hubka, V., 19 Oct 2022, In: Studies in Mycology. 102, p. 1-51

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• A New Filter Based Cultivation Approach for Improving Aspergillus Identification using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS)

  Salah, H., Kolecka, A., Rozaliyani, A., Wahyuningsih, R., Taj-Aldeen, S. J., Boekhout, T. & Houbraken, J., Feb 2022, In: Mycopathologia. 187, 1, p. 39-52 14 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • matrix-assisted laser desorption-ionization mass spectrometry 100%
  • Aspergillus 97%
  • Mass Spectrometry 77%
  • Lasers 69%
  • polycarbonate 60%

• A Spotlight on Sporothrix and Sporotrichosis

  Rodrigues, A. M., Hagen, F. & de Camargo, Z. P., Aug 2022, In: Mycopathologia. 187, 4, p. 407-411 5 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • sporotrichosis 100%
  • Sporothrix 97%
  • Sporotrichosis 94%
  • Ophiostomatales 50%
  • Sporothrix schenckii 31%

• A SYBR Green qPCR assay for specific detection of Colletotrichum ocimi, which causes black spot of basil

  MARTINO, I., CROUS, P. W., GARIBALDI, A., GULLINO, M. L. & GUARNACCIA, V., 15 Sept 2022, In: Phytopathologia Mediterranea. 61, 2, p. 405-413 9 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Brazilian Atlantic Forest and Pampa Biomes in the spotlight: an overview of Aspergillus, Penicillium, and Talaromyces (Eurotiales) species and the description of Penicillium nordestinense sp. nov.

  Barbosa, R. N., Felinto dos Santos, J. E., Bezerra, J. D. P., Istel, Ł., Houbraken, J., Oliveira, N. T. & Souza-Motta, C. M. D., 07 Jun 2022, In: Acta Botanica Brasilica. 36, e2021abb0390, p. 1-26 26 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Candidemia among Hospitalized Pediatric Patients Caused by Several Clonal Lineages of Candida parapsilosis

  Hare, R. K., Arastehfar, A., Rosendahl, S., Charsizadeh, A., Daneshnia, F., Eshaghi, H., Mirhendi, H., Boekhout, T., Hagen, F. & Arendrup, M. C., 12 Feb 2022, In: Journal of Fungi. 8, 2

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Candida parapsilosis 100%
  • Candidemia 98%
  • pediatrics 90%
  • polymorphism 75%
  • Disease Outbreaks 50%

• Carbohydrate esterase family 16 contains fungal hemicellulose acetyl esterases (HAEs) with varying specificity

  Venegas, F. A., Koutaniemi, S., Langeveld, S. M. J., Bellemare, A., Chong, S-L., Dilokpimol, A., Lowden, M. J., Hilden, K. S., Leyva-Illades, J. F., Makela, M. R., Thi Thanh My Pham, Peng, M., Hancock, M. A., Zheng, Y., Tsang, A., Tenkanen, M., Powlowski, J. & de Vries, R. P., 25 Sept 2022, In: New Biotechnology. 70, p. 28-38

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Characterization of NRPS and PKS genes involved in the biosynthesis of SMs in Alternaria dauci including the phytotoxic polyketide aldaulactone

  Courtial, J., Helesbeux, J. J., Oudart, H., Aligon, S., Bahut, M., Hamon, B., N’Guyen, G., Pigné, S., Hussain, A. G., Pascouau, C., Bataillé-Simoneau, N., Collemare, J., Berruyer, R. & Poupard, P., Dec 2022, In: Scientific Reports. 12, 1, 8155.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Polyketides 100%
  • Alternaria 96%
  • Lactones 65%
  • Secondary Metabolism 52%
  • Daucus carota 49%

• Communities of culturable yeasts and yeast-like fungi in oligotrophic hypersaline coastal waters of the Arabian Gulf surrounding Qatar

  Fotedar, R., Chatting, M., Kolecka, A., Zeyara, A., Al Malki, A., Kaul, R., Bukhari, S. J., Moaiti, M. A., Febbo, E. J., Boekhout, T. & Fell, J. W., May 2022, In: Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 115, 5, p. 609-633 25 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Qatar 100%
  • Fungi 61%
  • Yeasts 54%
  • Water 45%
  • Candida parapsilosis 27%

• Comparative Analysis of Enzyme Production Patterns of Lignocellulose Degradation of Two White Rot Fungi: Obba rivulosa and Gelatoporia subvermispora

  Marinovic, M., Di Falco, M., Aguilar Pontes, M. V., Gorzsas, A., Tsang, A., de Vries, R. P., Makela, M. R. & Hilden, K., Aug 2022, In: Biomolecules. 12, 8

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Comparative characterization of nine novel GH51, GH54 and GH62 α-l-arabinofuranosidases from Penicillium subrubescens

  Coconi Linares, N., Li, X., Dilokpimol, A. & de Vries, R. P., Feb 2022, In: FEBS Letters. 596, 3, p. 360-368 9 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Penicillium 100%
  • Fungi 66%
  • Enzymes 40%
  • Ascomycota 36%
  • Arabinose 34%

• Consolidation of Chloridium: new classification into eight sections with 37 species and reinstatement of the genera Gongromeriza and Psilobotrys

  Reblova, M., Hernandez-Restrepo, M., Sklena, F., Nekvindova, J., Reblova, K. & Kolaık, M., Dec 2022, In: Studies in Mycology. 103, 1, p. 86-211 126 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Soil 100%
  • Fungi 83%
  • soil fungi 73%
  • taxonomy 67%
  • Chaetosphaeria 56%

• Cutaneous disseminated sporotrichosis in immunocompetent patient: Case report and literature review

  Queiroz-Telles, F., Cognialli, R. C., Salvador, G. L., Moreira, G. A., Herkert, P. F. & Hagen, F., 11 May 2022, In: Medical Mycology Case Reports. 36, p. 31-34 4 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Sporotrichosis 100%
  • Brazil 40%
  • Skin 36%
  • Sporothrix 34%
  • Lymphatic Vessels 26%

• Da Vinci's yeast: Blastobotrys davincii f.a., sp. nov

  Visagie, C. M., Boekhout, T., Theelen, B., Dijksterhuis, J., Yilmaz, N. & Seifert, K. A., 27 Sept 2022, (E-pub ahead of print) In: Yeast (Chichester, England).

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungi 100%
  • Yeast 87%
  • Dust 80%
  • Candida 79%
  • Names 69%

• De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565

  Boden, S., Morio, F., Zhou, M., Gerrits van den Ende, B. & Hagen, F., 10 May 2022, In: Mycopathologia.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Nanopore Sequencing 100%
  • nanopores 89%
  • fluconazole 40%
  • Genome 40%
  • genome assembly 36%

• Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level

  Chroumpi, T., Martinez-Reyes, N., Kun, R. S., Peng, M., Lipzen, A., Ng, V., Tejomurthula, S., Zhang, Y., Grigoriev, I. V., Makela, M. R., de Vries, R. P. & Garrigues, S., Apr 2022, In: Fungal Genetics and Biology. 159

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Diversity of Sporocadaceae (pestalotioid fungi) from Rosa in China

  Peng, C., Crous, P. W., Jiang, N., Fan, X. L., Liang, Y. M. & Tian, C. M., 01 Dec 2022, In: Persoonia. 49, p. 201-260 60 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • fungus 100%
  • Rosa 96%
  • Rhodomyrtus 84%
  • China 73%
  • fungi 68%

• Dnabarcoder: An open‐source software package for analysing and predicting DNA sequence similarity cutoffs for fungal sequence identification

  Vu, D., Nilsson, R. H. & Verkley, G. J. M., 20 Jun 2022, In: Molecular Ecology Resources.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis

  Buijs, V. A., Groenewald, J. Z., Haridas, S., LaButti, K. M., Lipzen, A., Martin, F. M., Barry, K., Grigoriev, I. V., Crous, P. W. & Seidl, M. F., 01 May 2022, In: G3: Genes, Genomes, Genetics. 12, 5, jkac061.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Citrus 100%
  • Endophytes 80%
  • Life Style 60%
  • Cluster Analysis 11%
  • Carbohydrates 10%

• Epidemiology and Antifungal Susceptibility of Candida Species Isolated from 10 Tertiary Care Hospitals in Iran

  Badiee, P., Boekhout, T., Haddadi, P., Mohammadi, R., Ghadimi-Moghadam, A., Soltani, J., Zarei Mahmoudabadi, A., Ayatollahi Mousavi, S. A., Najafzadeh, M. J., Diba, K., Salimi-Khorashad, A. R., Amin Shahidi, M., Ghasemi, F. & Jafarian, H., 21 Dec 2022, In: Microbiology spectrum. 10, 6, p. e0245322

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • epidemiology 100%
  • Candida 99%
  • Tertiary Healthcare 89%
  • Iran 88%
  • hospital 87%

• Evolutionary engineering to improve Wickerhamomyces subpelliculosus and Kazachstania gamospora for baking

  Semumu, T., Gamero, A., Boekhout, T. & Zhou, N., 28 Jan 2022, In: Mircen Journal of Applied Microbiology and Biotechnology. 38, 3, p. 48

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Wickerhamomyces 100%
  • Kazachstania 95%
  • bakers yeast 70%
  • baking 63%
  • Saccharomyces cerevisiae 52%

• Evolutionary relationships of adenylation domains in fungi

  Noriler, S., Navarro-Muñoz, J. C., Glienke, C. & Collemare, J., Nov 2022, In: Genomics. 114, 6, 110525.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • non-ribosomal peptide synthase 100%
  • Fungi 56%
  • Oxidoreductases 32%
  • Enzymes 29%
  • Coenzyme A 22%

• Evolution-Informed Discovery of the Naphthalenone Biosynthetic Pathway in Fungi

  Mosunova, O. V., Navarro-Muñoz, J. C., Haksar, D., van Neer, J., Hoeksma, J., den Hertog, J. & Collemare, J., 28 Jun 2022, In: mBio. 13, 3, p. e0022322

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal Genome 100%
  • Biosynthetic Pathways 72%
  • Fungi 53%
  • Polyketides 35%
  • Synthetic Biology 16%

• Fecal Filobasidium Is Associated with Clinical Remission and Endoscopic Response following Fecal Microbiota Transplantation in Mild-to-Moderate Ulcerative Colitis

  van Thiel, I. A. M., Rahman, S., Hakvoort, T. B. M., Davids, M., Verseijden, C., van Hamersveld, P. H. P., Bénard, M. V., Lodders, M. H., Boekhout, T., van den Wijngaard, R. M., Heinsbroek, S. E. M., Ponsioen, C. Y. & de Jonge, W. J., 29 Mar 2022, In: Microorganisms. 10, 4

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fecal Microbiota Transplantation 100%
  • Ulcerative Colitis 68%
  • Tissue Donors 30%
  • Macrophages 13%
  • Remission Induction 12%

• Fungal glycoside hydrolase family 44 xyloglucanases are restricted to the phylum Basidiomycota and show a distinct xyloglucan cleavage pattern

  Sun, P., Li, X., Dilokpimol, A., Henrissat, B., de Vries, R. P., Kabel, M. A. & Makela, M. R., 21 Jan 2022, In: iScience. 25, 1

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Fungal Planet description sheets: 1383-1435

  Crous, P. W., Boers, J., Holdom, D., Osieck, E. R., Steinrucken, T. V., Tan, Y. P., Vitelli, J. S., Shivas, R. G., Barrett, M., Boxshall, A-G., Broadbridge, J., Larsson, E., Lebel, T., Pinruan, U., Sommai, S., Alvarado, P., Bonito, G., Decock, C. A., De la Peña-Lastra, S., Delgado, G., & 92 othersHoubraken, J., Macia-Vicente, J. G., Raja, H. A., Rigueiro-Rodrıguez, A., Rodrıguez, A., Wingfield, M. J., Adams, S. J., Akulov, A., AL-Hidmi, T., Antonın, V., Arauzo, S., Arenas, F., Armada, F., Aylward, J., Bellanger, J-M., Berraf-Tebbal, A., Bidaud, A., Boccardo, F., Cabero, J., Calledda, F., Corriol, G., Crane, J. L., Dearnaley, J. D. W., Dima, B., Dovana, F., Eichmeier, A., Esteve-Raventos, F., Fine, M., Ganzert, L., Garcıa, D., Torres-Garcia, D., Gene, J., Gutierrez, A., Iglesias, P., Istel, Ł., Jangsantear, P., Jansen, G. M., Jeppson, M., Karun, N. C., Karich, A., Khamsuntorn, P., Kokkonen, K., Kolarık, M., Kubatova, A., Labuda, R., Lagashetti, A. C., Lifshitz, N., Linde, C., Loizides, M., Luangsa-ard, J. J., Lueangjaroenkit, P., Mahadevakumar, S., Mahamedi, A. E., Malloch, D. W., Marincowitz, S., Mateos, A., Moreau, P-A., Miller, A. N., Molia, A., Morte, A., Navarro-Rodenas, A., Nebesaova, J., Nigrone, E., Nuthan, B. R., Oberlies, N. H., Pepori, A. L., Rämä, T., Rapley, D., Reschke, K., Robicheau, B. M., Roets, F., Roux, J., Saavedra, M., Sakolrak, B., Santini, A., evıkova, H., Singh, P. N., Singh, S. K., Somrithipol, S., Spetik, M., Sridhar, K. R., Starink-Willemse, M., Taylor, V. A., van Iperen, A. L., Vauras, J., Walker, A. K., Wingfield, B. D., Yarden, O., Cooke, A. W., Manners, A. G., Pegg, K. G. & Groenewald, J. Z., Jun 2022, In: Persoonia. 48, 1, p. 261-371 111 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • planet 100%
  • Sporobolus 69%
  • soil 56%
  • stem 50%
  • Agaricus 48%

• Fungal Planet description sheets: 1436–1477

  Tan, Y. P., Bishop-Hurley, S. L., Shivas, R. G., Cowan, D. A., Maggs-Kölling, G., Maharachchikumbura, S. S. N., Pinruan, U., Bransgrove, K. L., De la Peña-Lastra, S., Larsson, E., Lebel, T., Mahadevakumar, S., Mateos, A., Osieck, E. R., Rigueiro-Rodríguez, A., Sommai, S., Ajithkumar, K., Akulov, A., Anderson, F. E., Arenas, F., & 83 othersBalashov, S., Bañares, Á., Berger, D. K., Bianchinotti, M. V., Bien, S., Bilański, P., Boxshall, A-G., Bradshaw, M., Broadbridge, J., Calaça, F. J. S., Campos-Quiroz, C., Carrasco-Fernández, J., Castro, J. F., Chaimongkol, S., Chandranayaka, S., Chen, Y., Comben, D., Dearnaley, J. D. W., Ferreira-Sá, A. S., Dhileepan, K., Díaz, M. L., Divakar, P. K., Xavier-Santos, S., Fernández-Bravo, A., Gené, J., Guard, F. E., Guerra, M., Gunaseelan, S., Houbraken, J., Janik-Superson, K., Jankowiak, R., Jeppson, M., Jurjević, Ž., Kaliyaperumal, M., Kelly, L. A., Kezo, K., Khalid, A. N., Khamsuntorn, P., Kidanemariam, D., Kiran, M., Lacey, E., Langer, G. J., López-Llorca, L. V., Luangsa-ard, J. J., Lueangjaroenkit, P., Lumbsch, H. T., Maciá-Vicente, J. G., Mamatha Bhanu, L. S., Marney, T. S., Marqués-Gálvez, J. E., Morte, A., Naseer, A., Navarro-Ródenas, A., Oyedele, O., Peters, S., Piskorski, S., Quijada, L., Ramírez, G. H., Raja, K., Razzaq, A., Rico, V. J., Rodríguez, A., Ruszkiewicz-Michalska, M., Sánchez, R. M., Santelices, C., Savitha, A. S., Serrano, M., Leonardo-Silva, L., Solheim, H., Somrithipol, S., Sreenivasa, M. Y., Stępniewska, H., Strapagiel, D., Taylor, T., Torres-Garcia, D., Vauras, J., Villarreal, M., Visagie, C. M., Wołkowycki, M., Yingkunchao, W., Zapora, E., Groenewald, J. Z. & Crous, P. W., 2022, In: Persoonia. 49, p. 261-350

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • planet 100%
  • soil 56%
  • leaf spot 47%
  • Fragaria chiloensis 45%
  • Inocybe 44%
  8 Downloads (Pure)

• Fungal sensing by dectin-1 directs the non-pathogenic polarization of TH17 cells through balanced type I IFN responses in human DCs

  Gringhuis, S. I., Kaptein, T. M., Remmerswaal, E. B. M., Drewniak, A., Wevers, B. A., Theelen, B., D'Haens, G. R. A. M., Boekhout, T. & Geijtenbeek, T. B. H., Dec 2022, In: Nature Immunology. 23, 12, p. 1735-1748 14 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • dectin 1 100%
  • Interferon Type I 77%
  • Th17 Cells 77%
  • Transforming Growth Factors 68%
  • Dendritic Cells 58%

• Fusarium and allied fusarioid taxa (FUSA). 1

  Crous, P. W., Sandoval-Denis, M., Groenewald, J. Z., Costa, M. M., van Iperen, A. L., Starink-Willemse, M., Hernández-Restrepo, M., Kandemir, H., Ulaszewski, B., de Boer, W., Abdel-Azeem, A. M., Abdollahzadeh, J., Akulov, A., Bakhshi, M., Bezerra, J. D. P., Bhunjun, C. S., Câmara, M. P. S., Chaverri, P., Vieira, W. A. S., Decock, C. A., & 40 othersGaya, E., Gené, J., Guarro, J., Gramaje, D., Grube, M., Gupta, V. K., Guarnaccia, V., Hill, R., Hirooka, Y., Hyde, K. D., Jayawardena, R. S., Jeewon, R., Jurjević, Ž., Korsten, L., Lamprecht, S. C., Lombard, L., Maharachchikumbura, S. S. N., Polizzi, G., Rajeshkumar, K. C., Salgado-Salazar, C., Shang, Q-J., Shivas, R. G., Summerbell, R. C., Sun, G. Y., Swart, W. J., Tan, Y. P., Vizzini, A., Xia, J. W., Zare, R., González, C. D., Iturriaga, T., Savary, O., Coton, M., Coton, E., Jany, J-L., Liu, C., Zeng, Z-Q., Zhuang, W-Y., Yu, Z-H. & Thines, M., 01 Jun 2022, In: Fungal Systematics and Evolution. 9, p. 161-200 40 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Neocosmospora 100%
  • species complex 69%
  • Fusarium 68%
  • Soil 56%
  • Asparagus Plant 51%

• Fusarium and allied genera from China: species diversity and distribution

  Wang, M. M., Crous, P. W., Sandoval-Denis, M., Han, S. L., Liu, F., Liang, J. M., Duan, W. J. & Cai, L., 30 Jun 2022, In: Persoonia. 48, 1, p. 1-53 53 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Neocosmospora 100%
  • Fusarium 99%
  • species diversity 97%
  • species complex 83%
  • geographical distribution 82%

• Fusarium diversity associated with the Sorghum-Striga interaction in Ethiopia

  Lombard, L., van Doorn, R., Groenewald, J. Z., Tessema, T., Kuramae, E. E., Etolo, D. W., Raaijmakers, J. M. & Crous, P. W., 2022, In: Fungal Systematics and Evolution. 10, 1, p. 177–215 39 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Striga 100%
  • Sorghum 77%
  • Fusarium 60%
  • sorghum 60%
  • Ethiopia 54%

• GalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulans

  Meng, J., Nemeth, Z., Peng, M., Fekete, E., Garrigues, S., Lipzen, A., Ng, V., Savage, E., Zhang, Y., Grigoriev, I. V., Makela, M. R., Karaffa, L. & de Vries, R. P., Jun 2022, In: Microbial Biotechnology. 15, 6, p. 1839-1851

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Genera of phytopathogenic fungi: GOPHY 4

  Chen, Q., Bakhshi, M., Balci, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta Jung, M., Jiang, N., Jung, T., Majek, T., Marincowitz, S., Milenkovi, I., Mostert, L., Nakashima, C., Nurul Faziha, I., Pan, M., Raza, M., & 17 othersScanu, B., Spies, C. F. J., Suhaizan, L., Suzuki, H., Tian, C. M., Tomovsky, M., Urbez-Torres, J. R., Wang, W., Wingfield, B. D., Wingfield, M. J., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J. Z., Cai, L. & Crous, P. W., Mar 2022, In: Studies in Mycology. 101, 1, p. 417-564 148 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • plant pathogenic fungi 100%
  • Fungi 82%
  • Endothia 59%
  • Leptosphaerulina 56%
  • Pezicula 55%

• Genetic and phenotypic diversity of fecal Candida albicans strains in irritable bowel syndrome

  van Thiel, I. A. M., Stavrou, A. A., de Jong, A., Theelen, B., Davids, M., Hakvoort, T. B. M., Admiraal-van den Berg, I., Weert, I. C. M., de Kruijs, M. A. M. H., Vu, D., Moissl-Eichinger, C., Heinsbroek, S. E. M., Jonkers, D. M. A. E., Hagen, F., Boekhout, T., de Jonge, W. J. & van den Wijngaard, R. M., 30 Mar 2022, In: Scientific Reports. 12, 1, p. 5391

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Irritable Bowel Syndrome 100%
  • Candida albicans 88%
  • Genetic Variation 84%
  • Candida albicans ECE1 protein 31%
  • Fungi 26%

• Genome sequences of 24 Aspergillus niger sensu stricto strains to study strain diversity, heterokaryon compatibility, and sexual reproduction

  Seekles, S. J., Punt, M., Savelkoel, N., Houbraken, J., Wösten, H. A. B., Ohm, R. A. & Ram, A. F. J., 06 Jul 2022, In: G3 (Bethesda, Md.). 12, 7

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Aspergillus niger 100%
  • Reproduction 71%
  • Diploidy 53%
  • Genome 50%
  • Mycelium 16%

• GH10 and GH11 endoxylanases in Penicillium subrubescens: Comparative characterization and synergy with GH51, GH54, GH62 alpha-L-arabinofuranosidases from the same fungus

  Li, X., Kouzounis, D., Kabel, M. A. & de Vries, R. P., 25 Sept 2022, In: New Biotechnology. 70, p. 84-92

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Glycoside Hydrolase family 30 harbors fungal subfamilies with distinct polysaccharide specificities

  Li, X., Kouzounis, D., Kabel, M. A., de Vries, R. P. & Dilokpimol, A., 22 Mar 2022, In: New Biotechnology. 67, p. 32-41 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Glycoside Hydrolases 100%
  • Polysaccharides 72%
  • Ports and harbors 59%
  • Glycoside 47%
  • Polysaccharide 42%

• High sorbic acid resistance of Penicillium roqueforti is mediated by the SORBUS gene cluster

  Punt, M., Seekles, S. J., van Dam, J. L., de Adelhart Toorop, C., Martina, R. R., Houbraken, J., Ram, A. F. J., Wösten, H. A. B. & Ohm, R. A., Jun 2022, In: PLoS Genetics. 18, 6, p. e1010086

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Sorbic Acid 100%
  • sorbic acid 83%
  • Penicillium 78%
  • acid tolerance 71%
  • Multigene Family 63%

• Hybridizations Between formae speciales of Venturia inaequalis Pave the Way for a New Biocontrol Strategy to Manage Fungal Plant Pathogens

  Caffier, V., Shiller, J., Bellanger, M. N., Collemare, J., Expert, P., Gladieux, P., Pascouau, C., Sannier, M. & Le Cam, B., Jul 2022, In: Phytopathology. 112, 7, p. 1401-1405 5 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Pyracantha 100%
  • Venturia inaequalis 77%
  • Malus 73%
  • plant pathogens 51%
  • biological control 46%

• Intraspecific variability in heat resistance of fungal conidia

  van den Brule, T., Punt, M., Seekles, S. J., Segers, F. J. J., Houbraken, J., Hazeleger, W. C., Ram, A. F. J., Wösten, H. A. B., Zwietering, M. H., Dijksterhuis, J. & den Besten, H. M. W., Jun 2022, In: Food Research International. 156, p. 111302

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • Fungal Spores 100%
  • intraspecific variation 73%
  • heat tolerance 72%
  • conidia 68%
  • Paecilomyces 59%