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  • A transformer architecture for retention time prediction in liquid chromatography mass spectrometry-based proteomics

    Pham, T. V., Nguyen, V. V., Vu, D., Henneman, A. A., Richardson, R. A., Piersma, S. R. & Jimenez, C. R., Apr 2023, In: Proteomics. 23, 7-8, p. e2200041

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

    Open Access
    2 Citations (Scopus)
  • Comparing genomic variant identification protocols for Candida auris

    Li, X., Muñoz, J. F., Gade, L., Argimon, S., Bougnoux, M-E., Bowers, J. R., Chow, N. A., Cuesta, I., Farrer, R. A., Maufrais, C., Monroy-Nieto, J., Pradhan, D., Uehling, J., Vu, D., Yeats, C. A., Aanensen, D. M., d'Enfert, C., Engelthaler, D. M., Eyre, D. W., Fisher, M. C., & 6 othersHagen, F., Meyer, W., Singh, G., Alastruey-Izquierdo, A., Litvintseva, A. P. & Cuomo, C. A., 13 Apr 2023, In: Microbial genomics. 9, 4

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

    Open Access
    2 Citations (Scopus)
  • Fungal Planet description sheets: 1550-1613

    Crous, P. W., Costa, M. M., Kandemir, H., Vermaas, M., Vu, D., Zhao, L., Arumugam, E., Flakus, A., Jurjević, Ž., Kaliyaperumal, M., Mahadevakumar, S., Murugadoss, R., Shivas, R. G., Tan, Y. P., Wingfield, M. J., Abell, S. E., Marney, T. S., Danteswari, C., Darmostuk, V., Denchev, C. M., & 98 othersDenchev, T. T., Etayo, J., Gené, J., Gunaseelan, S., Hubka, V., Illescas, T., Jansen, G. M., Kezo, K., Kumar, S., Larsson, E., Mufeeda, K. T., Piątek, M., Rodriguez-Flakus, P., Sarma, P. V. S. R. N., Stryjak-Bogacka, M., Torres-Garcia, D., Vauras, J., Acal, D. A., Akulov, A., Alhudaib, K., Asif, M., Balashov, S., Baral, H-O., Baturo-Cieśniewska, A., Begerow, D., Beja-Pereira, A., Bianchinotti, M. V., Bilański, P., Chandranayaka, S., Chellappan, N., Cowan, D. A., Custódio, F. A., Czachura, P., Delgado, G., De Silva, N. I., Dijksterhuis, J., Dueñas, M., Eisvand, P., Fachada, V., Fournier, J., Fritsche, Y., Fuljer, F., Ganga, K. G. G., Guerra, M. P., Hansen, K., Hywel-Jones, N., Ismail, A. M., Jacobs, C. R., Jankowiak, R., Karich, A., Kemler, M., Kisło, K., Klofac, W., Krisai-Greilhuber, I., Latha, K. P. D., Lebeuf, R., Lopes, M. E., Lumyong, S., Maciá-Vicente, J. G., Maggs-Kölling, G., Magistà, D., Manimohan, P., Martín, M. P., Mazur, E., Mehrabi-Koushki, M., Miller, A. N., Mombert, A., Ossowska, E. A., Patejuk, K., Pereira, O. L., Piskorski, S., Plaza, M., Podile, A. R., Polhorský, A., Pusz, W., Raza, M., Ruszkiewicz-Michalska, M., Saba, M., Sánchez, R. M., Singh, R., Śliwa, L., Smith, M. E., Stefenon, V. M., Strašiftáková, D., Suwannarach, N., Szczepańska, K., Telleria, M. T., Tennakoon, D. S., Thines, M., Thorn, R. G., Urbaniak, J., van der Vegte, M., Vasan, V., Vila-Viçosa, C., Voglmayr, H., Wrzosek, M., Zappelini, J. & Groenewald, J. Z., 30 Dec 2023, In: Persoonia. 51, p. 280-417 138 p.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

    Open Access
  • How, not if, is the question mycologists should be asking about DNA-based typification

    Nilsson, R. H., Ryberg, M., Wurzbacher, C., Tedersoo, L., Anslan, S., Põlme, S., Spirin, V., Mikryukov, V., Svantesson, S., Hartmann, M., Lennartsdotter, C., Belford, P., Khomich, M., Retter, A., Corcoll, N., Martinez, D. G., Jansson, T., Ghobad-Nejhad, M., Vu, D., Sanchez-Garcia, M., & 2 othersKristiansson, E. & Abarenkov, K., 2023, In: MycoKeys. 96, p. 143-157 15 p.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

    Open Access
    10 Citations (Scopus)
  • The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered

    Abarenkov, K., Nilsson, R. H., Larsson, K-H., Taylor, A. F. S., May, T. W., Frøslev, T. G., Pawlowska, J., Lindahl, B., Põldmaa, K., Truong, C., Vu, D., Hosoya, T., Niskanen, T., Piirmann, T., Ivanov, F., Zirk, A., Peterson, M., Cheeke, T. E., Ishigami, Y., Jansson, A. T., & 12 othersJeppesen, T. S., Kristiansson, E., Mikryukov, V., Miller, J. T., Oono, R., Ossandon, F. J., Paupério, J., Saar, I., Schigel, D., Suija, A., Tedersoo, L. & Kõljalg, U., 11 Nov 2023, In: Nucleic Acids Research.

    Research output: Contribution to journal/periodicalArticleScientificpeer-review

    Open Access
    7 Citations (Scopus)