19982019

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2019

Environmental filtering: A case of bacterial community assembly in soil

Yan, Y., Klinkhamer, P. G. L., van Veen, J. A. & Kuramae, E. E., 2019, In : Soil Biology & Biochemistry. 136, 107531.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

High-level abundance of Methanobacteriales and Syntrophobacterales may help to prevent corrosion of metal sheet piles

in 't Zandt, M. H., Kip, N., Frank, J., Jansen, S., van Veen, J. A., Jetten, M. S. M. & Welte, C. U., 2019, In : Applied and Environmental Microbiology. 85, 20, AEM.01369-19.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Moisture is more important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland

Lupatini, M., Suleiman, A. K. A., Jacques, R. J. S., Pylro, V. S., van Veen, J. A., Kuramae, E. E. & Roesch, L. F. W., 2019, In : Microbial Ecology. 77, 2, p. 460-470

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil

Cassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2019, In : Environmental Microbiology. 21, 4, p. 1241-1254

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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201 Downloads (Pure)
2018

Co-variation of bacterial and fungal communities in different sorghum cultivars and growth stages is soil dependent

Schlemper, T. R., van Veen, J. A. & Kuramae, E. E., 2018, In : Microbial Ecology. 76, 1, p. 205-214

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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149 Downloads (Pure)

Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission

Lourenço, K. S., Dimitrov, M., Pijl, A. S., Soares, J. R., do Carmo, J. B., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In : GCB Bioenergy. 10, 9, p. 645-660

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
236 Downloads (Pure)

Effect of Burkholderia tropica and Herbaspirillum frisingense strains on sorghum growth is plant genotype dependent

Schlemper, T. R., Dimitrov, M., Silva Gutierrez, F., van Veen, J. A., Silveira, A. P. D. & Kuramae, E. E., 2018, In : PeerJ. 6, e5346.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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113 Downloads (Pure)

Nitrosospira sp. govern nitrous oxide emissions in a tropical soil amended with residues of bioenergy crop

Lourenço, K. S., Cassman, N., Pijl, A. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In : Frontiers in Microbiology. 9, 674.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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128 Downloads (Pure)

Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion

Lourenço, K. S., Suleiman, A. K. A., Pijl, A. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In : Microbiome. 6, 142.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
92 Downloads (Pure)
2017

Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications

Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L., van Veen, J. A., Lemos, E. G. & Kuramae, E. E., 2017, In : Scientific Reports. 7, 41193.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
169 Downloads (Pure)

Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

Yan, Y., Kuramae, E. E., De Hollander, M., Klinkhamer, P. G. L. & van Veen, J. A., 2017, In : ISME Journal. 11, p. 56-66

Research output: Contribution to journal/periodicalArticleScientificpeer-review

31 Downloads (Pure)

Methanogens predominate in natural corrosion protective layers on metal sheet piles.

Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E. & van Veen, J. A., 2017, In : Scientific Reports. 7, 11899.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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162 Downloads (Pure)

Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils

Schlemper, T. R., Leite, M. F. A., Reis Lucheta, A., Shimels, M., Bouwmeester, H. J., van Veen, J. A. & Kuramae, E. E., 2017, In : FEMS Microbiology Ecology. 93, 8, fix096.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)
Open Access
File
253 Downloads (Pure)

Soil networks become more connected and take up more carbon as nature restoration progresses

Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M., Lujan Soto, R., Bouffaud, M. L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., Schmidt, O. & 12 others, Thomson, B. C., Tisserant, E., Uroz, S., Winding, A., Bailey, M. J., Bonkowski, M., Faber, J. H., Martin, F., Lemanceau, P., De Boer, W., van Veen, H. & van der Putten, W. H., 2017, In : Nature Communications. 8, 14349.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
215 Downloads (Pure)

Successive DNA extractions improve characterization of soil microbial communities

Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A. & Kuramae, E. E., 2017, In : PeerJ. 5, e2915.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
426 Downloads (Pure)
2016

Bacterial community succession in pine-wood decomposition

Kielak, A., Scheublin, T., Mendes, L. W., Van Veen, J. A. & Kuramae, E. E., 2016, In : Frontiers in Microbiology. 7, 00231.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
178 Downloads (Pure)

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

Bai, Y., Eijsink, V. G. H., Kielak, A. M., Van Veen, J. A. & De Boer, W., 2016, In : Environmental Microbiology. 18, 1, p. 38-49

Research output: Contribution to journal/periodicalArticleScientificpeer-review

12 Downloads (Pure)

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland.

Cassman, N., Leite, M. F. A., Pan, Y., De Hollander, M., van Veen, J. A. & Kuramae, E. E., 2016, In : Scientific Reports. 6, 23680.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
183 Downloads (Pure)

Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils

Hannula, S. E. & van Veen, J. A., 2016, In : Frontiers in Microbiology. 7, fmicb.2016.01897.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
119 Downloads (Pure)

The ecology of Acidobacteria: moving beyond genes and genomes

Kielak, A. M., Barreto, C. C., Kowalchuk, G. A., van Veen, J. A. & Kuramae, E. E., 2016, In : Frontiers in Microbiology. 744.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
350 Downloads (Pure)
2015

Antifungal rhizosphere bacteria can increase as response to the presence of saprotrophic fungi

De Boer, W., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., De Ridder-Duine, A. S., Thion, C., van Veen, J. A. & Van der Wal, A., 2015, In : PLoS One. 10, 9, e0137988.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
256 Downloads (Pure)

Baiting of bacteria with hyphae of common soil fungi revealed a diverse group of potentially mycophagous secondary consumers in the rhizosphere

Rudnick, M. B., van Veen, J. A. & de Boer, W., 2015, In : Soil Biology & Biochemistry. 88, September, p. 73-82

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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109 Downloads (Pure)

Exploring the genomic traits of fungus-feeding bacterial genus Collimonas

Song, C., Schmidt, R. L., de Jager, V. C. L., Krzyzanowska, D., Jongedijk, E., Cankar, K., Beekwilder, J., van Veen, A., De Boer, W., van Veen, J. A. & Garbeva, P. V., 2015, In : BMC Genomics. 16, 1103.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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206 Downloads (Pure)

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas?

Rudnick, M. B., van Veen, J. A. & De Boer, W., 2015, In : Environmental Microbiology Reports. 7, 5, p. 709-714

Research output: Contribution to journal/periodicalArticleScientificpeer-review

7 Downloads (Pure)

Revisiting the dilution procedure used to manipulate microbial biodiversity in terrestrial systems revisited

Yan, Y., Kuramae, E. E., Klinkhamer, P. G. L. & Van Veen, J. A., 2015, In : Applied and Environmental Microbiology. 81, 13, p. 4246-4252

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
483 Downloads (Pure)

Soil-borne microbiome: linking diversity to function

Mendes, L. M., Tsai, S. M., Navarrete, A. A., De Hollander, M., Van Veen, J. A. & Kuramae, E. E., 2015, In : Microbial Ecology. 70, 1, p. 255-265

Research output: Contribution to journal/periodicalArticleScientificpeer-review

8 Downloads (Pure)

Soil conditions and land use intensification effects on soil microbial communities across a range of European field sites

Thomson, B. C., Tisserant, E., Plassart, P., Uroz, S., Griffiths, R. I., Hannula, S. E., Buée, M., Mougel, C., Ranjard, L., Van Veen, J. A., Martin, F., Bailey, M. J. & Lemanceau, P., 2015, In : Soil Biology & Biochemistry. 88, September

Research output: Contribution to journal/periodicalArticleScientificpeer-review

6 Downloads (Pure)

Soil microbiome responses to the short-term effects of Amazonian deforestation

Navarrete, A. A., Tsai, S. M., Mendes, L. W., Faust, K., De Hollander, M., Cassman, N., Raes, J., Van Veen, J. A. & Kuramae, E. E., 2015, In : Molecular Ecology. 24, 10, p. 2433-2448

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)

The dual role of microbes in corrosion

Kip, D. J. & Van Veen, J. A., 2015, In : ISME Journal. 9, p. 542-551

Research output: Contribution to journal/periodicalArticleScientificpeer-review

6 Downloads (Pure)

Verrucomicrobial community structure and size as indicators for changes in chemical factors linked to soil fertility

Navarrete, A. A., Soares, T., Rosetto, R., Van Veen, J. A., Tsai, S. M. & Kuramae, E. E., 2015, In : Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 108, 3, p. 741-752

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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292 Downloads (Pure)
2014

Biosynthetic genes and activity spectrum of antifungal polyynes from Collimonas fungivorans Ter331

Fritsche, K., Van den Berg, M., De Boer, W., Van Beek, T. A., Raaijmakers, J. M., Van Veen, J. A. & Leveau, J. H. J., 2014, In : Environmental Microbiology. 16, 5, p. 1334-1345

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
287 Downloads (Pure)

Do genetic modifications in crops affect soil fungi? a review

Hannula, S. E., De Boer, W. & Van Veen, J. A., 2014, In : Biology and Fertility of Soils. 50, 3, p. 433-446

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
575 Downloads (Pure)

Impact of interspecific interactions on antimicrobial activity among soil bacteria

Tyc, O., Van den Berg, M., Gerards, S., Van Veen, J. A., Raaijmakers, J., De Boer, W. & Garbeva, P., 2014, In : Frontiers in Microbiology. 5, 567.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
494 Downloads (Pure)

Impact of long term N, P, K and NPK fertilization on the composition and potential functions of bacterial community in grassland soil

Pan, Y., Cassman, N., De Hollander, M., Mendes, L. W., Korevaar, H., Geerts, R. H. E. M., Van Veen, J. A. & Kuramae, E. E., 2014, In : FEMS Microbiology Ecology. 90, 1, p. 195-205

Research output: Contribution to journal/periodicalArticleScientificpeer-review

5 Downloads (Pure)

Soil-borne microbial functional structure across different land uses

Kuramae, E. E., Zhou, J., Kowalchuk, G. A. & Van Veen, J. A., 2014, In : The Scientific World Journal. 2014, p. 216071

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
298 Downloads (Pure)

Taxonomical and functional microbial community selection in soybean rhizosphere

Mendes, L. W., Kuramae, E. E., Navarrete, A. A., Van Veen, J. A. & Tsai, S. M., 2014, In : ISME Journal. 8, p. 1577-1587

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2013

Acidobacterial community responses to agricultural management of soybean in Amazon forest soils

Navarrete, A. A., Kuramae, E. E., De Hollander, M., Pijl, A. S., Van Veen, J. A. & Tsai, S. M., 2013, In : FEMS Microbiology Ecology. 83, 3, p. 607-621

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
615 Downloads (Pure)

Different Selective Effects on Rhizosphere Bacteria Exerted by Genetically Modified versus Conventional Potato Lines

Franco Dias, A. C., Dini-Andreote, F., Hannula, S. E., de Cassia Pereira e Silva, M., Salles, J., De Boer, W., Van Veen, J. A. & Van Elsas, J. D., 2013, In : PLoS One. 8, 7, e67948.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
File
385 Downloads (Pure)

Effect of genetic modification of potato starch on decomposition of leaves and tubers and on fungal decomposer communities

Hannula, S. E., De Boer, W., Baldrian, P. & Van Veen, J. A., 2013, In : Soil Biology & Biochemistry. 58, p. 88-98

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Impacts of 3 years of elevated atmospheric CO2 on rhizosphere carbon flow and microbial community dynamics

Drigo, B., Kowalchuk, G. A., Knapp, B. A., Pijl, A. S., Boschker, H. T. S. & Van Veen, J. A., 2013, In : Global Change Biology. 19, 2, p. 621-636

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Soil and Freshwater and Marine Sediment Food Webs: Their Structure and Function

Krumins, J. A., Van Oevelen, D., Bezemer, T. M., De Deyn, G. B., Hol, W. H. G., Van Donk, E., De Boer, W., De Ruiter, P. C., Middelburg, J. J., Monroy, F., Soetaert, K. E. R., Thebault, E., Van de Koppel, J., Van Veen, J. A., Viketoft, M. & Van der Putten, W. H., 2013, In : BioScience. 63, 1, p. 35-42

Research output: Contribution to journal/periodicalArticleScientificpeer-review

14 Downloads (Pure)

Soil microbial diversity patterns of a lowland spring environment

Vasileiadis, S., Puglisi, E., Arena, M., Cappa, F., Van Veen, J. A., Cocconcelli, P. S. & Trevisan, M., 2013, In : FEMS Microbiology Ecology. 86, 2, p. 172-184

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2012
Open Access
2 Downloads (Pure)
Open Access
File
297 Downloads (Pure)

Characterization of bacterial isolates from rotting potato tuber tissue showing antagonism to Dickeya sp. biovar 3 in vitro and in planta

Czajkowski, R. L., De Boer, W. J., Van Veen, J. A. & Van der Wolf, J. M., 2012, In : Plant Pathology. 61, 1, p. 169-182

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
4 Downloads (Pure)

Comparative genomics of bacteria from the genus Collimonas: linking (dis)similarities in gene content to phenotypic variation and conservation

Mela, F., Fritsche, K., De Boer, W., Van den Berg, M., Van Veen, J. A., Maharaj, N. N. & Leveau, J. H. J., 2012, In : Environmental Microbiology Reports. 4, 4, p. 424-432

Research output: Contribution to journal/periodicalArticleScientificpeer-review

General Surveillance of the soil ecosystem: An approach to monitoring unexpected adverse effects of GMO's

Smit, E., Bakker, P. A. H. M., Bergmans, H., Bloem, J., Griffiths, B. S., Rutgers, M., Sanvido, O., Singh, B. K., Van Veen, J. A., Wilhelm, R. & Glandorf, D. C. M., 2012, In : Ecological Indicators. 14, 1, p. 107-113

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Soil characteristics more strongly influence soil bacterial communities than land-use type

Kuramae, E. E., Yergeau, E., Wong, L., Pijl, A. S., Van Veen, J. A. & Kowalchuk, G. A., 2012, In : FEMS Microbiology Ecology. 79, 1, p. 12-24

Research output: Contribution to journal/periodicalArticleScientificpeer-review

5 Downloads (Pure)

Studies on the interaction between the biocontrol agent, Serratia plymuthica A30, and blackleg-causing Dickeya sp (biovar 3) in potato (Solanum tuberosum)

Czajkowski, R. L., De Boer, W. J., Van Veen, J. A. & Van der Wolf, J. M., 2012, In : Plant Pathology. 61, 4, p. 677-688

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access