Research output per year
Research output per year
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Dive into the research topics where Jos M. Raaijmakers is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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baseLess: lightweight detection of sequences in raw MinION data
Noordijk, B., Nijland, R., Carrion, V. J., Raaijmakers, J. M., de Ridder, D. & de Lannoy, C., 15 Feb 2023, (E-pub ahead of print) In: Bioinformatics Advances. 7 p., vbad017.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open AccessFile15 Downloads (Pure) -
Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum
Braga, L. P. P., Tanentzap, A. J., Lee, B., Tsai, S. M., Raaijmakers, J. M., Mendes, R. & Mendes, L. W., 01 Oct 2023, In: Applied Soil Ecology. 190, 105018.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access -
Impact of the fungal pathogen Fusarium oxysporum on the taxonomic and functional diversity of the common bean root microbiome
Mendes, L. W., Raaijmakers, J. M., de Hollander, M., Sepo, E., Gómez Expósito, R., Chiorato, A. F., Mendes, R., Tsai, S. M. & Carrión, V. J., 03 Aug 2023, In: Environmental Microbiome. 18, 1, 68.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
Open Access1 Citation (Scopus) -
Importance of Bacteroidetes in host–microbe interactions and ecosystem functioning
Pan, X., Raaijmakers, J. M. & Carrión, V. J., 01 May 2023, In: Trends in Microbiology.Research output: Contribution to journal/periodical › Article › Scientific › peer-review
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Samenstelling, Functioneren en Toepassing van Plantmicrobiomen in de Landbouw: Een deskstudie naar de huidige wetenschappelijke inzichten over samenstelling en functioneren van microbiomen bij de teelt van gewassen en de mogelijkheden voor toepassingen om weerbaarheid van gewassen te verhogen
Abreu, L., de Boer, W. & Raaijmakers, J. M., Feb 2023, NIOO-KNAW. 52 p.Research output: Book/Report › Report › Professional
Open AccessFile200 Downloads (Pure)
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PRoMISE II: Gates Foundation: Promoting Root Microbes for Integrated Striga Eradication II
Raaijmakers, J. M., de Boer, W. & Kuramae, E.
01/08/2023 → 31/07/2028
Project: Research
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Endosphere microbiome: NWO - Unwiring beneficial functions and regulatory networks in the plant endosphere
01/02/2020 → 01/02/2026
Project: Research
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Ministerie OCenW - Harnessing the second genome of plants. Microbial imprinting for crop resilience (MiCRop)
01/01/2020 → 31/12/2023
Project: Research
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University of Copenhagen - Microbiome Assisted Triticum Resilience In X-dimensions
01/01/2020 → 31/12/2025
Project: Research
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NWO Zwaartekracht - Impact of plant domestication on microbiome assembly and functioning
Raaijmakers, J. M., Cornadó Carbó, D., Garbeva, P., Ramirez, D. X., Rizaludin, M. S. & Sarango Flores, S. W.
01/01/2020 → 31/12/2030
Project: Research
Prizes
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Global Highly Cited Researchers 2019
Raaijmakers, Jos M. (Recipient), 19 Nov 2019
Prize: National/international honour › Academic
Activities
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Ph.D thesis defense: Raul Masteling, Breaking the witches’ spell. Towards steering the soil microbiome for volatile-mediated control of the root parasitic weed Striga
Wietse de Boer (Supervisor) & Jos M. Raaijmakers (Supervisor)
12 Apr 2023Activity: Teaching/Examination/Supervision › PhD candidate reviewing/examination
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Keynote lecture VIB Conference Leuven: Back to the Roots
Jos M. Raaijmakers (Keynote speaker)
07 Dec 2022 → 08 Dec 2022Activity: Talk or presentation › Academic
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Committee member PhD defense Hoang Ha
Jos M. Raaijmakers (Examiner)
30 Nov 2022Activity: Teaching/Examination/Supervision › PhD candidate reviewing/examination
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Rewilding plant microbiomes
Jos M. Raaijmakers (Keynote speaker)
18 Nov 2022Activity: Talk or presentation › Societal
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Novo Nordisk Foundation conference "Plant-microbe interactions"
Jos M. Raaijmakers (Organiser)
13 Nov 2022 → 17 Nov 2022Activity: Participating in or organising an event › Conference › Academic
Press/Media
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Microbieel ecoloog Jos Raaijmakers gaat back to his roots
07/07/2023
1 Media contribution
Press/Media: Research
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Argusvlinder, Galapagos, stikstofmeten en alle overige onderwerpen
04/06/2023
1 item of Media coverage
Press/Media: Research
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Datasets
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Streptomyces recombinase A (recA) gene, partial cds.
Cordovez da Cunha, V. (Creator), Carrion, V. J. (Creator), Etalo, D. N. (Creator), Mumm, R. (Creator), Zhu, H. (Creator), van Wezel, G. (Creator) & Raaijmakers, J. M. (Creator), NCBI, 04 Nov 2015
https://www.ncbi.nlm.nih.gov/popset/944203303
Dataset
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Transcriptome sequencing of Arabidopsis exposed to volatiles from Microbacterium sp. strain EC8
Cordovez da Cunha, V. (Creator), Schop, S. (Creator), Hordijk, C. A. (Creator), Dupré de Boulois, H. (Creator), Coppens, F. (Creator), Hanssen, I. (Creator), Raaijmakers, J. M. (Creator) & Carrión, V. J. (Creator), NCBI, 24 Sept 2018
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA492842
Dataset
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Fungi internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence.
Liu, Y. (Creator), Zachow, C. (Creator), Raaijmakers, J. M. (Creator) & De Bruijn, I. (Creator), NCBI, 03 Feb 2016
https://www.ncbi.nlm.nih.gov/popset/984291244
Dataset
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Disentangling the genetic basis of rhizosphere microbiome assembly in tomato
Oyserman, B. (Creator), Sarango Flores, S. W. (Creator), Griffioen, T. (Creator), Pan, X. (Creator), van der Wijk, E. (Creator), Pronk, L. (Creator), Lokhorst, W. (Creator), Nurfikari, A. (Creator), Paulson, J. N. (Creator), Movassagh, M. (Creator), Stopnisek, N. (Creator), Kupczok, A. (Creator), Cordovez da Cunha, V. (Creator), Carrion Bravo, V. (Creator), Ligterink, W. (Creator), Snoek, B. (Creator), Medema, M. H. (Creator) & Raaijmakers, J. M. (Creator), European Nucleotide Archive (ENA), 2022
https://www.ebi.ac.uk/ena/browser/view/PRJNA787039
Dataset
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Transcriptome sequencing of Arabidopsis exposed to fungal volatiles
Cordovez da Cunha, V. (Creator), Moisan, K. (Creator), Carrion, V. J. (Creator) & Raaijmakers, J. M. (Creator), NCBI, 03 Jul 2017
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA392864
Dataset