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Research Output

2020

DiSCount: computer vision for automated quantification of Striga seed germination

Masteling, R., Voorhoeve, L., Ijsselmuiden, J., Dini-Andreote, F., De Boer, W. & Raaijmakers, J. M., 01 May 2020, In : Plant Methods. 16, 60

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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20 Downloads (Pure)

Draft Genome Sequence of Lipopeptide-Producing Strain Pseudomonas fluorescens DSM 11579 and Comparative Genomics with Pseudomonas sp. Strain SH-C52, a Closely Related Lipopeptide-Producing Strain

Kirchner, N., Cano-Prieto, C., van der Voort, M., Raaijmakers, J. M. & Gross, H., 2020, In : MICROBIOLOGY RESOURCE ANNOUNCEMENTS. 9

Research output: Contribution to journal/periodicalArticleScientificpeer-review

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29 Downloads (Pure)

Fungal volatiles influence plant defence against aboveground and belowground herbivory

Moisan, K., Aragón, M., Gort, G., Dicke, M., Cordovez, V., Raaijmakers, J. M. & Lucas-Barbosa, D., 2020, In : Functional Ecology. in press

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Microbial and volatile profiling of soils suppressive to Fusarium culmorum of wheat

Ossowicki, A., Tracanna, V., Petrus, M. L. C., van Wezel, G., Raaijmakers, J. M., Medema, M. H. & Garbeva, P., 2020, In : Proceedings of the Royal Society B-Biological Sciences. 287, 1921, 20192527.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)

Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists

Rossmann, M., Pérez-Jaramillo, J. E., Kavamura, V. N., Chiaramonte, J. B., Dumack, K., Fiore-Donno, A. M., Mendes, L. W., Ferreira, M. M. C., Bonkowski, M., Raaijmakers, J. M., Mauchline, T. H. & Mendes, R., 2020, In : FEMS Microbiology Ecology. 96, 4, fiaa032.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

No evidence of modulation of indirect plant resistance of Brassica rapa plants by volatiles from soil-borne fungi

Moisan, K., Lucas-Barbosa, D., Villela, A., Greenberg, L. O., Cordovez, V., Raaijmakers, J. M. & Dicke, M., 2020, In : Ecological Entomology. in press

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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14 Downloads (Pure)

Plant functional group drives the community structure of saprophytic fungi in a grassland biodiversity experiment

Francioli, D., van Rijssel, S. Q., van Ruijven, J., Termorshuizen, A. J., Cotton, T. E. A., Dumbrell, A. J., Raaijmakers, J. M., Weigelt, A. & Mommer, L., 2020, In : Plant and Soil. Online

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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55 Downloads (Pure)

Production of glycine-derived ammonia as a low-cost and long-distance antibiotic strategy by Streptomyces

Avalos, M., Garbeva, P., Raaijmakers, J. M. & van Wezel, G. P., 2020, In : ISME Journal. 14, p. 568-583

Research output: Contribution to journal/periodicalArticleScientificpeer-review

File
46 Downloads (Pure)
2019

Biocontrol organism

Bosmans, L., Lievens, B., Rediers, H. & Raaijmakers, J. M., 28 Nov 2019, Patent No. US 2019/0357541 A1, 28 Nov 2019

Research output: Patent

Open Access
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5 Downloads (Pure)

Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia

Perez Jaramillo, J. E., De Hollander, M., Ramirez, C. A., Mendes, R., Raaijmakers, J. M. & Carrión, V. J., 2019, In : Microbiome. 7, 114.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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97 Downloads (Pure)

Ecology and Evolution of Plant Microbiomes

Cordovez, V., Dini-Andreote, F., Carrión, V. J. & Raaijmakers, J. M., 2019, In : Annual Review of Microbiology. Online

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)

Extracting the GEMs: Genotype, Environment and Microbiome interactions shaping host phenotypes

Oyserman, B. O., Cordovez, V., Sarango Flores, S. W., Nijveen, H., Medema, M. H. & Raaijmakers, J. M., 2019, In : bioRxiv. Preprint

Research output: Contribution to journal/periodicalArticleScientific

Open Access
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47 Downloads (Pure)

Harnessing the microbiome to control plant parasitic weeds

Masteling, R., Lombard, L., De Boer, W., Raaijmakers, J. M. & Dini-Andreote, F., 2019, In : Current Opinion in Microbiology. 49, June, p. 26-33

Research output: Contribution to journal/periodicalArticleScientificpeer-review

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55 Downloads (Pure)

Impacts of long-term plant residue management on soil organic matter quality, Pseudomonas community structure and disease suppressiveness

Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A. & Wakelin, S. A., 2019, In : Soil Biology & Biochemistry. online, p. 396-406

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Linking ecology and plant pathology to unravel the importance of soil-borne fungal pathogens in species-rich grasslands

Ampt, E. A., van Ruijven, J., Raaijmakers, J. M., Termorshuizen, A. J. & Mommer, L., 2019, In : European Journal of Plant Pathology. 154, 1, p. 141-156

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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75 Downloads (Pure)

Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome

Carrión, V. J., Perez Jaramillo, J. E., Cordovez, V., Tracanna, V., De Hollander, M., Ruiz Buck, D., Mendes, L. W., van IJcken, W. F. J., Gómez Expósito, R., Elsayed, S. S., Mohanraju, P., Arifah, A., van der Oost, J., Paulson, J. N., Mendes, R., van Wezel, G., Medema, M. H. & Raaijmakers, J. M., 2019, In : Science. 366, 6465, p. 606-612

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Resistance breeding of common bean shapes the physiology of the rhizosphere microbiome

Mendes, L. W., Gonçalves De Chaves, M., da Fonseca, M. D. C., Mendes, R., Raaijmakers, J. M. & Tsai, S. M., 2019, In : Frontiers in Microbiology. 10, 2019.02252.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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55 Downloads (Pure)

Volatiles of pathogenic and non-pathogenic soil-borne fungi affect plant development and resistance to insects

Moisan, K., Cordovez, V., van de Zande, E. M., Raaijmakers, J. M., Dicke, M. & Lucas-Barbosa, D., 15 Jun 2019, In : Oecologia. 190, 3, p. 589-604

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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90 Downloads (Pure)
2018

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean

Mendes, L. W., Mendes, R., Raaijmakers, J. M. & Tsai, S. M., 2018, In : ISME Journal. 12, p. 3038-3042

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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175 Downloads (Pure)

Comparative microbiome analysis of a Fusarium wilt suppressive soil and a Fusarium wilt conducive soil from the Châteaurenard region

Siegel-Hertz, K., Edel-Hermann, V., Chapelle, E., Terrat, S., Raaijmakers, J. M. & Steinberg, C., 2018, In : Frontiers in Microbiology. 9, p. 568 1 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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107 Downloads (Pure)

Embracing community ecology in plant microbiome research

Dini-Andreote, F. & Raaijmakers, J. M., 2018, In : Trends in Plant Science. 23, 6, p. 467-469

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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120 Downloads (Pure)

Exploring fish microbial communities to mitigate emerging diseases in aquaculture

de Bruijn, I., Liu, Y., Wiegertjes, G. F. & Raaijmakers, J. M., 2018, In : FEMS Microbiology Ecology. 94, 1, fix161.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

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86 Downloads (Pure)

Healthy scents: microbial volatiles as new frontier in antibiotic research?

Avalos Garcia, M., van Wezel, G. P., Raaijmakers, J. M. & Garbeva, P. V., 2018, In : Current Opinion in Microbiology. 45, October, p. 84-91

Research output: Contribution to journal/periodicalArticleScientificpeer-review

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152 Downloads (Pure)

Impact of Pseudomonas H6 surfactant on all external life cycle stages of the fish parasitic ciliate Ichthyophthirius multifiliis

Al-Jubury, A., lu, C., Walter Kania, P., von Gersdorff Jørgensen, L., Liu, Y., De Bruijn, I., Raaijmakers, J. M. & Buchman, K., 2018, In : Journal of Fish Diseases. 41, 7, p. 1147-1152

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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203 Downloads (Pure)

Influence of resistance breeding in common bean on rhizosphere microbiome composition and function

Mendes, L. W., Raaijmakers, J. M., De Hollander, M., Mendes, R. & Tsai, S. M., 2018, In : ISME Journal. 2017, 12, p. 212-224

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)

Inter- and intracellular colonization of Arabidopsis roots by endophytic actinobacteria and the impact of plant hormones on their antimicrobial activity

Van der Meij, A., Willemse, J., Schneijderberg, M. A., Geurts, R., Raaijmakers, J. & van Wezel, G., 2018, In : Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology. 111, 5, p. 679-690

Research output: Contribution to journal/periodicalArticleScientificpeer-review

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119 Downloads (Pure)

Involvement of Burkholderiaceae and sulfurous volatiles in disease suppressive soils

Carrion, V. J., Cordovez, V., Tyc, O., Etalo, D. W., De Bruijn, I., de Jager, V. C. L., Medema, M. H., Eberl, L. & Raaijmakers, J. M., 2018, In : ISME Journal. 12, p. 2307-2321

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
1 Downloads (Pure)

Isolation, characterization and comparative analysis of plant-associated bacteria for suppression of soil-borne diseases of field-grown groundnut in Vietnam

Le, C. N., Hoang, T. K., Thai, T. H., Tran, T. L., Phan, T. P. N. & Raaijmakers, J. M., 2018, In : Biological Control. in press, p. 256-262

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Lost in diversity: the interactions between soil-borne fungi, biodiversity and plant productivity

Mommer, L., Cotton, T., Raaijmakers, J. M., Termorshuizen, A. J., van Ruijven, J., Hendriks, M., van Rijssel, S. Q., van de Mortel, J. E., van der Paauw, J. W., Schijlen, E. G. W. M., Smit-Tiekstra, A. E., Berendse, F., de Kroon, H. & Dumbrell, A. J., 2018, In : New Phytologist. 218, 2, p. 542-553

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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267 Downloads (Pure)

Microbial extracellular polymeric substances – ecological functions and impact on soil aggregation

Costa, O. Y. A., Raaijmakers, J. M. & Kuramae, E. E., 2018, In : Frontiers in Microbiology. 9, 1636.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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158 Downloads (Pure)

Modulation of plant chemistry by beneficial root microbiota

Etalo, D., Jeon, J-S. & Raaijmakers, J. M., 2018, In : Natural Product Reports. 35, 5, p. 398-409

Research output: Contribution to journal/periodicalArticleScientificpeer-review

7 Downloads (Pure)

Priming of plant growth promotion by volatile compounds of root-associated Microbacterium

Cordovez, V., Schop, S., Hordijk, C. A., Dupré de Boulois, H., Coppens, F., Hanssen, I., Raaijmakers, J. M. & Carrion, V. J., 2018, In : Applied and Environmental Microbiology. 84, 22, e01865-18. .

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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202 Downloads (Pure)

Road MAPs to engineer host microbiomes

Oyserman, B. O., Medema, M. H. & Raaijmakers, J. M., 2018, In : Current Opinion in Microbiology. 43, June , p. 46-54

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
3 Downloads (Pure)

Saving Seed Microbiomes

Berg, G. & Raaijmakers, J. M., 2018, In : ISME Journal. 12, p. 1167-1170

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
5 Downloads (Pure)

Secondary metabolism and interspecific competition affect accumulation of spontaneous mutants in the gacS/gacA regulatory system in Pseudomonas protegens

Yan, Q., Lopes, L. D., Schaffer, B. T., Kidarsa, T., Vining, O., Philmus, B., Song, C., Stockwell, V. O., Raaijmakers, J. M., McPhail, K. L., Andreote, F. D., Chang, J. H. & Loper, J. E., 2018, In : mBio. 9, 1, e01845-17.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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113 Downloads (Pure)

The rhizosphere microbiome as an auxiliary breeding component in common bean against Fusarium oxysporum

Mendes, L. W., Raaijmakers, J. M. & Mendes, R., 2018, In : Annual Report of the Bean Improvement Cooperative. LXI, 61, p. 117-118

Research output: Contribution to journal/periodicalArticleScientific

Open Access
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17 Downloads (Pure)

The wild side of plant microbiomes

Perez Jaramillo, J. E., Carrion, V. J., De Hollander, M. & Raaijmakers, J. M., 16 Aug 2018, In : Microbiome. 6, 143

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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122 Downloads (Pure)
2017

Antagonism between two root-associated beneficial Pseudomonas strains does not affect plant growth promotion and induced resistance against a leaf-chewing herbivore

Pangesti, N., Vandenbrande, S., Pineda, A., Dicke, M., Raaijmakers, J. M. & Van Loon, J. J. A., 2017, In : FEMS Microbiology Ecology. 93, 4, fix038.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Current insights into the role of rhizosphere bacteria in disease suppressive soils

Gómez Expósito, R., De Bruijn, I., Postma, J. & Raaijmakers, J. M., 2017, In : Frontiers in Microbiology. 2529.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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216 Downloads (Pure)

Genome-wide analysis of bacterial determinants of plant growth promotion and induced systemic resistance by Pseudomonas fluorescens

Cheng, X., Etalo, D. W., van de Mortel, J. E., Dekkers, E., Nguyen, L., Medema, M. H. & Raaijmakers, J. M., 2017, In : Environmental Microbiology. 19, 11, p. 4638-4656

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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177 Downloads (Pure)

Linking rhizosphere microbiome composition of wild and domesticated Phaseolus vulgaris to genotypic and root phenotypic traits

Perez Jaramillo, J. E., Carrion, V. J., Bosse, M., Ferrão, L. F. V., De Hollander, M., Garcia, A. A. F., Ramirez, C. A., Mendez, R. & Raaijmakers, J. M., 2017, In : ISME Journal. 11, p. 2244-2257

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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265 Downloads (Pure)

Membrane Interactions of Natural Cyclic Lipodepsipeptides of the Viscosin Group

Geudens, N., Nasir, M. N., Crowet, J-M., Raaijmakers, J. M., Fehér, K., Coenye, T., Martins, J. C., Lins, L., Sinnaeve, D. & Deleu, M., 2017, In : Biochimica et Biophysica Acta (BBA) - Biomembranes. 1859, 3, p. 331-339 9 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Plant phenotypic and transcriptional changes induced by volatiles from the fungal root pathogen Rhizoctonia solani

Cordovez, V., Mommer, L., Moisan, K., Lucas-Barbosa, D., Pierik, R., Mumm, R., Carrion, V. J. & Raaijmakers, J. M., 2017, In : Frontiers in Plant Science. 8, 01262.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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120 Downloads (Pure)

Potential for biocontrol of hairy root disease by a Paenibacillus clade

Bosmans, L., de Bruijn, I., Gerards, S., Moerkens, R., Van Looveren, L., Wittemans, L., Van Calenberge, B., Paeleman, A., Van Kerckhove, S., Rozenski, J., de Mot, R., Rediers, H., Raaijmakers, J. M. & Lievens, B., 2017, In : Frontiers in Microbiology. 8, 447.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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304 Downloads (Pure)

Smelly fumes: volatile-mediated communication between bacteria and other organisms: Research Topic

Weisskopf, L. (Guest ed.), Garbeva, P. V. (Guest ed.), Ryu, C-M. (Guest ed.) & Raaijmakers, J. M., Aug 2017, In : Frontiers in Microbiology.

Research output: Contribution to journal/periodicalSpecial issue (editorship)Scientific

Open Access
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544 Downloads (Pure)
2016

Challenges and opportunities in harnessing soil disease suppressiveness for sustainable pasture production

Dignam, B. E. A., O'Callaghan, M., Condron, L. M., Raaijmakers, J. M., Kowalchuk, G. A. & Wakelin, S. A., 2016, In : Soil Biology & Biochemistry. 95, April, p. 100-111

Research output: Contribution to journal/periodicalArticleScientificpeer-review

28 Downloads (Pure)

Elucidating the diversity of aquatic Microdochium and Trichoderma species and their activity against the fish pathogen Saprolegnia diclina

Liu, Y., Zachow, C., Raaijmakers, J. M. & De Bruijn, I., 2016, In : International Journal of Molecular Sciences. 17, 140.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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153 Downloads (Pure)

Fungal invasion of the rhizosphere microbiome

Chapelle, E., Mendes, R., Bakker, P. A. H. M. & Raaijmakers, J., 2016, In : ISME Journal. 10, p. 265-268

Research output: Contribution to journal/periodicalArticleScientificpeer-review

7 Downloads (Pure)

Impact of plant domestication on rhizosphere microbiome assembly and functions

Perez Jaramillo, J. E., Mendes, R. & Raaijmakers, J., 2016, In : Plant Molecular Biology. 90, 6, p. 635-644

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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269 Downloads (Pure)

Impact of soil heat on reassembly of bacterial communities in the rhizosphere microbiome and plant disease suppression

van der Voort, M., Kempenaar, M., van Driel, M., Raaijmakers, J. M. & Mendes, R., 2016, In : Ecology Letters. 19, 4, p. 375-382

Research output: Contribution to journal/periodicalArticleScientificpeer-review

15 Downloads (Pure)