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Research Output

2020

Agriculture erases climate constraints on soil nematode communities across large spatial scales

Li, X., Zhu, H., Geisen, S., Bellard, C., Hu, F., Li, H., Chen, X. & Liu, M., 2020, In : Global Change Biology. 26, 2, p. 919-930

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Community-level interactions between plants and soil biota during range expansion

Koorem, K., Snoek, B., Bloem, J., Geisen, S., Kostenko, O., Manrubia, M., Ramirez, K., Weser, C., Wilschut, R. & van der Putten, W. H., 2020, In : Journal of Ecology. Online

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Patterns of local, intercontinental and interseasonal variation of soil bacterial and eukaryotic microbial communities

De Gruyter, J., Weedon, J. T., Bazot, S., Dauwe, S., Fernandez-Garberí, P-R., Geisen, S., De La Motte, L. G., Heinesch, B., Janssens, I. A., Leblans, N., Manise, T., Ogaya, R., Löfvenius, M. O., Peñuelas, J., Sigurdsson, B. D., Vincent, G. & Verbruggen, E., 01 Mar 2020, In : FEMS Microbiology Ecology. 96, 3, fiaa018.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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15 Downloads (Pure)

Rhizosphere protists are key determinants of plant health

Xiong, W., Song, Y., Yang, K., Gu, Y., Wei, Z., Kowalchuk, G. A., Xu, Y., Jousset, A., Shen, Q. & Geisen, S., 2020, In : Microbiome. 8, 1

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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14 Downloads (Pure)

The effect of microbial inoculant origin on the rhizosphere bacterial community composition and plant growth-promotion

Gu, Y., Dong, K., Geisen, S., Yang, W., Yan, Y., Gu, D., Liu, N., Borisjuk, N., Luo, Y. & Friman, V-P., 2020, In : Plant and Soil.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2019

A low proportion of rare bacterial taxa responds to abiotic changes compared with dominant taxa

Kurm, V., Geisen, S. & Hol, W. H. G., Feb 2019, In : Environmental Microbiology. 21, 2, p. 750-758

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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119 Downloads (Pure)

A methodological framework to embrace soil biodiversity

Geisen, S., Briones, M. J. I., Gan, H., Behan-Pelletier, V. M., Friman, V-P., de Groot, G. A., Hannula, S. E., Lindo, Z., Philippot, L., Tiunov, A. V. & Wall, D. H., 2019, In : Soil Biology & Biochemistry. 136, 107536.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Challenges and Opportunities for Soil Biodiversity in the Anthropocene

Geisen, S., Wall, D. H. & van der Putten, W. H., 2019, In : Current Biology. 29, 19, p. R1036-R1044

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Competition and predation as possible causes of bacterial rarity

Kurm, V., van der Putten, W. H., Weidner, S., Geisen, S., Snoek, B. L., Bakx, T. & Hol, W. H. G., 2019, In : Environmental Microbiology. 21, 4, p. 1356-1368

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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154 Downloads (Pure)

Deciphering Underlying Drivers of Disease Suppressiveness Against Pathogenic Fusarium oxysporum

Ou, Y., Penton, C. R., Geisen, S., Shen, Z., Sun, Y., Lv, N., Wang, B., Ruan, Y., Xiong, W., Li, R. & Shen, Q., 12 Nov 2019, In : Frontiers in Microbiology. 10, 02535.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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38 Downloads (Pure)

Efficient reduction of antibiotic residues and associated resistance genes in tylosin antibiotic fermentation waste using hyperthermophilic composting

Liao, H., Zhao, Q., Cui, P., Chen, Z., Yu, Z., Geisen, S., Friman, V-P. & Zhou, S., 2019, In : Environment International. 133, 105203.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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35 Downloads (Pure)

Horizontal gene transfer and shifts in linked bacterial community composition are associated with maintenance of antibiotic resistance genes during food waste composting

Liao, H., Friman, V-P., Geisen, S., Zhao, Q., Cui, P., Lu, X., Chen, Z., Yu, Z. & Zhou, S., 10 Apr 2019, In : Science of the Total Environment. 660, p. 841-850

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

How do we show the importance of invisible soil organisms?

Geisen, S., 26 Aug 2019, Global Soil Biodiversity Initiative.

Research output: Working paper/discussion paperWeb articlePopularizing

Latitudinal variation in soil nematode communities under climate warming-related range-expanding and native plants

Wilschut, R. A., Geisen, S., Martens, H. J., Kostenko, O., De Hollander, M., Ten Hooven, F. C., Weser, C., Snoek, B., Bloem, J., Caković, D., Čelik, T., Koorem, K., Krigas, N., Manrubia, M., Ramirez, K. S. R., Tsiafouli, M. A., Vreš, B. & van der Putten, W. H., 2019, In : Global Change Biology. 25, 8, p. 2714-2726

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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72 Downloads (Pure)

Microbial amendments alter protist communities within the soil microbiome

Xiong, W., Li, R., Guo, S., Karlsson, I., Jiao, Z., Xun, W., Kowalchuk, G. A., Shen, Q. & Geisen, S., 2019, In : Soil Biology & Biochemistry. 135, p. 379-382 4 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Microbial invasions in terrestrial ecosystems

Thakur, M. P., van der Putten, W. H., Cobben, M. M. P., Van Kleunen, M. & Geisen, S., 2019, In : Nature Reviews Microbiology. Online, p. 621-631

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

New insights in belowground drivers of plant performance

Wilschut, R. A. & Geisen, S., 05 Apr 2019, Global Soil Biodiversity Initiative.

Research output: Working paper/discussion paperWeb articleProfessional

Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils

Zhao, Z-B., He, J-Z., Geisen, S., Han, L-L., Wang, J-T., Shen, J-P., Wei, W-X., Fang, Y-T., Li, P-P. & Zhang, L-M., 2019, In : Microbiome. 7, 1

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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80 Downloads (Pure)

Protists: Puppet Masters of the Rhizosphere Microbiome

Gao, Z., Karlsson, I., Geisen, S., Kowalchuk, G. & Jousset, A., Feb 2019, In : Trends in Plant Science. 24, 2, p. 165-176

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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53 Downloads (Pure)

Range-expansion effects on the belowground plant microbiome

Ramirez, K. S., Snoek, L. B., Koorem, K., Geisen, S., Bloem, L. J., ten Hooven, F., Kostenko, O., Krigas, N., Manrubia, M., Caković, D., van Raaij, D., Tsiafouli, M. A., Vreš, B., Čelik, T., Weser, C., Wilschut, R. A. & van der Putten, W. H., 2019, In : Nature Ecology and Evolution.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
1 Downloads (Pure)

Root traits and belowground herbivores relate to plant-soil feedback variation among congeners

Wilschut, R. A., van der Putten, W. H., Garbeva, P. V., Harkes, P., Konings, W., Kulkarni, P., Martens, H. J. & Geisen, S., 2019, In : Nature Communications. 10, 1564(2019).

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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146 Downloads (Pure)

Soil functional responses to drought under range-expanding and native plant communities: Lay Summary

Manrubia, M., van der Putten, W. H., Weser, C., ten Hooven, F., Martens, H. J., Brinkman, E. P., Geisen, S., Ramirez, K. & Veen, G. F., 2019, 12 ed., (Functional Ecology).

Research output: Working paper/discussion paperWeb articlePopularizing

Open Access
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3 Downloads (Pure)

Soil functional responses to drought under range-expanding and native plant communities

Manrubia, M., van der Putten, W. H., Weser, C., ten Hooven, F., Martens, H. J., Brinkman, E. P., Geisen, S., Ramirez, K. & Veen, G. F., 2019, In : Functional Ecology. 33, 12, p. 2402-2416

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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66 Downloads (Pure)

Soil nematode abundance and functional group composition at a global scale

van den Hoogen, J., Geisen, S., Routh, D., Ferris, H., Traunspurger, W., Wardle, D. A., de Goede, R. G. M., Adams, B. J., Ahmad, W., Andriuzzi, W. S., Bardgett, R. D., Bonkowski, M., Campos-Herrera, R., Cares, J. E., Caruso, T., de Brito Caixeta, L., Chen, X., Costa, S. R., Creamer, R., Mauro da Cunha Castro, J. & 50 others, Dam, M., Djigal, D., Escuer, M., Griffiths, B. S., Gutiérrez, C., Hohberg, K., Kalinkina, D., Kardol, P., Kergunteuil, A., Korthals, G., Krashevska, V., Kudrin, A. A., Li, Q., Liang, W., Magilton, M., Marais, M., Martín, J. A. R., Matveeva, E., Mayad, E. H., Mulder, C., Mullin, P., Neilson, R., Nguyen, T. A. D., Nielsen, U. N., Okada, H., Rius, J. E. P., Pan, K., Peneva, V., Pellissier, L., Carlos Pereira da Silva, J., Pitteloud, C., Powers, T. O., Powers, K., Quist, C. W., Rasmann, S., Moreno, S. S., Scheu, S., Setälä, H., Sushchuk, A., Tiunov, A. V., Trap, J., van der Putten, W., Vestergård, M., Villenave, C., Waeyenberge, L., Wall, D. H., Wilschut, R., Wright, D. G., Yang, J-I. & Crowther, T. W., Aug 2019, In : Nature. 572, 7768, p. 194-198 5 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

The soil microbiome as a driver of plant communities and vegetation

Geisen, S., Mar 2019, In : Gewasbescherming. 50, 2, p. 53

Research output: Contribution to journal/periodicalArticlePopularizing

Open Access
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6 Downloads (Pure)

Trophic regulations of the soil microbiome

Thakur, M. P. & Geisen, S., 2019, In : Trends in Microbiology. 27, 9

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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11 Downloads (Pure)
2018

Humusica 2, article 17: techno humus systems and global change − three crucial questions: HUMUSICA 2 - Natural terrestrial humus systems

Zanella, A., Geisen, S., Ponge, J-F., Jagers, G., Benbrook, C., Dilli, T., Vacca, A., Kwiatkowska-Malina, J., Aubert, M., Fusaro, S., Nobili, M. D., Lomolino, G. & Gomiero, T., 2018, In : Applied Soil Ecology. 122, p. 237-253 17 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

18 Downloads (Pure)

Hyperthermophilic Composting Accelerates the Removal of Antibiotic Resistance Genes and Mobile Genetic Elements in Sewage Sludge

Liao, H., Lu, X., Rensing, C., Friman, V. P., Geisen, S., Chen, Z., Yu, Z., Wei, Z., Zhou, S. & Zhu, Y., 2018, In : Environmental Science and Technology. 52, 1, p. 266-276 11 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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146 Downloads (Pure)

Integrating quantitative morphological and qualitative molecular methods to analyse soil nematode community responses to plant range expansion

Geisen, S., Snoek, B., Ten Hooven, F. C., Duyts, H., Kostenko, O., Bloem, J., Martens, H. J., Quist, C. W., Helder, J. & van der Putten, W. H., 2018, In : Methods in Ecology and Evolution. in press, p. 1366-1378

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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234 Downloads (Pure)

Methodological advances to study the diversity of soil protists and their functioning in soil food webs

Geisen, S. & Bonkowski, M., 2018, In : Applied Soil Ecology. 123, February, p. -

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)

Network Analyses Can Advance Above-Belowground Ecology

Ramirez, K. S., Geisen, S., Morriën, E., Snoek, B. L. & van der Putten, W. H., 2018, In : Trends in Plant Science. 23, 9, p. 759-768 10 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado

Ferreira de Araujo, A. S., Mendes, L. W., Lemos, L. N., Lopes Antunes, J. E., Aguiar Beserra Jr, J. E., Catanho Pereira de Lyra, M. D. C., Barreto Figueiredo, M. D. V., de Almeida Lopes, A. C., Ferreira Gomes, R. L., Bezerra, W. M., Maciel Melo, V. M., de Araujo, F. F. & Geisen, S., 2018, In : Communications Biology. 1, 135.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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28 Downloads (Pure)

Soil protist communities form a dynamic hub in the soil microbiome

Xiong, W., Jousset, A., Guo, S., Karlsson, I., Zhao, Q., Wu, H., Kowalchuk, G. A., Shen, Q., Li, R. & Geisen, S., 2018, In : ISME Journal. 12, p. 634-638

Research output: Contribution to journal/periodicalArticleScientificpeer-review

4 Downloads (Pure)

Soil protists: a fertile frontier in biology research

Lara, E. & Geisen, S., 29 Apr 2018, (OUPblog).

Research output: Working paper/discussion paperWeb articlePopularizing

Soil protists: a fertile frontier in soil biology research

Geisen, S., Mitchell, E. A. D., Adl, S., Bonkowski, M., Dunthorn, M., Ekelund, F., Fernández, L. D., Jousset, A., Krashevska, V., Singer, D., Spiegel, F. W., Walochnik, J. & Lara, E., 01 May 2018, In : FEMS Microbiology Reviews. 42, 3, p. 293-323 31 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

The need for standardisation: Exemplified by a description of the diversity, community structure and ecological indices of soil nematodes

Griffiths, B. S., de Groot, G. A., Laros, I., Stone, D. & Geisen, S., 2018, In : Ecological Indicators. 87, p. 43 - 46

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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90 Downloads (Pure)
2017

Phylogeny and Systematics of Leptomyxid Amoebae (Amoebozoa, Tubulinea, Leptomyxida)

Smirnov, A., Nassonova, E., Geisen, S., Bonkowski, M., Kudryavtsev, A., Berney, C., Glotova, A., Bondarenko, N., Dyková, I., Mrva, M., Fahrni, J. & Pawlowski, J., 2017, In : Protist. 168, 2, p. 220-252 33 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

1 Downloads (Pure)

Seed and root endophytic fungi in a range expanding and a related plant species

Geisen, S., Kostenko, O., Cnossen, M. C., ten Hooven, F. C., Vreš, B. & van Der Putten, W. H., 2017, In : Frontiers in Microbiology. 8, 01645.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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112 Downloads (Pure)

Soil networks become more connected and take up more carbon as nature restoration progresses

Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M., Lujan Soto, R., Bouffaud, M. L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., Schmidt, O. & 12 others, Thomson, B. C., Tisserant, E., Uroz, S., Winding, A., Bailey, M. J., Bonkowski, M., Faber, J. H., Martin, F., Lemanceau, P., De Boer, W., van Veen, H. & van der Putten, W. H., 2017, In : Nature Communications. 8, 14349.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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215 Downloads (Pure)

Soil protistology rebooted: 30 fundamental questions to start with

Geisen, S., Mitchell, E. A. D., Wilkinson, D. M., Adl, S., Bonkowski, M., Brown, M. W., Fiore-donno, A. M., Heger, T. J., Jassey, V. E. J., Krashevska, V., Lahr, D. J. G., Marcisz, K., Mulot, M., Payne, R., Singer, D., Anderson, O. R., Charman, D. J., Ekelund, F., Griffiths, B. S., Rønn, R. & 27 others, Smirnov, A., Bass, D., Belbahri, L., Berney, C., Blandenier, Q., Chatzinotas, A., Clarholm, M., Dunthorn, M., Feest, A., Fernández, L. D., Foissner, W., Fournier, B., Gentekaki, E., Hájek, M., Helder, J., Jousset, A., Koller, R., Kumar, S., La Terza, A., Lamentowicz, M., Mazei, Y., Santos, S. S., Seppey, C. V. W., Spiegel, F. W., Walochnik, J., Winding, A. & Lara, E., 2017, In : Soil Biology & Biochemistry. 111, p. 94-103

Research output: Contribution to journal/periodicalArticleScientificpeer-review

3 Downloads (Pure)

The prey’s scent – volatile organic compound mediated interactions between soil bacteria and their protist predators

Schulz-Bohm, K., Geisen, S., Wubs, E. R. J., Song, C., De Boer, W. & Garbeva, P. V., 2017, In : ISME Journal. 11, p. 817-820

Research output: Contribution to journal/periodicalArticleScientificpeer-review

31 Downloads (Pure)

UniEuk: Time to Speak a Common Language in Protistology!

Berney, C., Ciuprina, A., Bender, S., Brodie, J., Edgcomb, V., Kim, E., Rajan, J., Parfrey, L. W., Adl, S., Audic, S., Bass, D., Caron, D. A., Cochrane, G., Czech, L., Dunthorn, M., Geisen, S., Gloeckner, F. O., Mahe, F., Quast, C., Kaye, J. Z. & 5 others, Simpson, A. G. B., Stamatakis, A., del Campo, J., Yilmaz, P. & de Vargas, C., 2017, In : Journal of Eukaryotic Microbiology. 64, 3, p. 407-411

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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82 Downloads (Pure)
2016

Coprophilic amoebae and flagellates, including Guttulinopsis, Rosculus and Helkesimastix, characterise a divergent and diverse rhizarian radiation and contribute to a large diversity of faecal-associated protists

Bass, D., Silberman, J. D., Brown, M. W., Pearce, R. A., Tice, A. K., Jousset, A., Geisen, S. & Hartikainen, H., May 2016, In : Environmental Microbiology. 18, 5, p. 1604-1619

Research output: Contribution to journal/periodicalArticleScientificpeer-review

2 Downloads (Pure)

Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group

Tice, A. K., Shadwick, L. L., Fiore-Donno, A. M., Geisen, S., Kang, S., Schuler, G. A., Spiegel, F. W., Wilkinson, K. A., Bonkowski, M., Dumack, K., Lahr, D. J. G., Voelcker, E., Clauß, S., Zhang, J. & Brown, M. W., 28 Dec 2016, In : Biology Direct. 11, 1, 69.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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119 Downloads (Pure)

Interspecific differences in nematode control between range-expanding plant species and their congeneric natives

Wilschut, R. A., Geisen, S., Ten Hooven, F. C. & van der Putten, W. H., 2016, In : Soil Biology & Biochemistry. 100, p. 233-241

Research output: Contribution to journal/periodicalArticleScientificpeer-review

22 Downloads (Pure)

Organic matter composition and the protist and nematode communities around anecic earthworm burrows

Andriuzzi, W. S., Ngo, P-T., Geisen, S., Keith, A. M., Dumack, K., Bolger, T., Bonkowski, M., Brussaard, L., Faber, J. H., Chabbi, A., Rumpel, C. & Schmidt, O., 2016, In : Biology and Fertility of Soils. 52, 1, p. 91-100 10 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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116 Downloads (Pure)

Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function

Griffiths, B. S., Römbke, J., Schmelz, R. M., Scheffczyk, A., Faber, J. H., Bloem, J., Pérès, G., Cluzeau, D., Chabbi, A., Suhadolc, M., Sousa, J. P., Martins Da Silva, P., Carvalho, F., Mendes, S., Morais, P., Francisco, R., Pereira, C., Bonkowski, M., Geisen, S., Bardgett, R. D. & 19 others, De Vries, F. T., Bolger, T., Dirilgen, T., Schmidt, O., Winding, A., Hendriksen, N. B., Johansen, A., Philippot, L., Plassart, P., Bru, D., Thomson, B., Griffiths, R. I., Bailey, M. J., Keith, A., Rutgers, M., Mulder, C., Hannula, S. E., Creamer, R. & Stone, D., 01 Oct 2016, In : Ecological Indicators. 69, p. 213-223

Research output: Contribution to journal/periodicalArticleScientificpeer-review

4 Downloads (Pure)

The bacterial-fungal energy channel concept challenged by enormous functional versatility of soil protists

Geisen, S., 2016, In : Soil Biology & Biochemistry. 102, November, p. 22-25

Research output: Contribution to journal/periodicalArticleScientificpeer-review

10 Downloads (Pure)

The soil food web revisited: Diverse and widespread mycophagous soil protists

Geisen, S., Koller, R., Huenninghaus, M., Dumack, K., Urich, T. & Bonkowski, M., Mar 2016, In : Soil Biology & Biochemistry. 94, p. 10-18

Research output: Contribution to journal/periodicalArticleScientificpeer-review

17 Downloads (Pure)

Thorough high-throughput sequencing analyses unravels huge diversities of soil parasitic protists

Geisen, S., 2016, In : Environmental Microbiology. 18, 6, p. 1669-1672

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
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136 Downloads (Pure)