1992 …2019

Research output per year

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Research Output

2019

Database establishment for the secondary fungal DNA barcode translational elongation factor 1 alpha (TEF1 alpha)

Meyer, W., Irinyi, L., Minh Thuy Vi Hoang, Robert, V., Garcia-Hermoso, D., Desnos-Ollivier, M., Yurayart, C., Tsang, C-C., Lee, C-Y., Woo, P. C. Y., Pchelin, I. M., Uhrlass, S., Nenoff, P., Chindamporn, A., Chen, S., Hebert, P. D. N., Sorrell, T. C., Halliday, C., Arthur, I., Moretti, M. L. & 27 others, de Almeida Soares, C. M., Muniz, M. D. M., Zancope-Oliveira, R. M., Cruz, F. O., Melo, A. S. D. A., Colombo, A. L., Nishikaku, A. S., Hendrickx, M., Stubbe, D., Normand, A-C., Piarroux, R., Ranque, S., Dromer, F., Arabatzis, M., Velegraki, A., Cardinali, G., Castanon, L. R., Taylor, M. L., Toriello, C., de Hoog, S., Pais, C., de Beer, W., Gryzenhout, M., Guarro, J., Cano-Lira, J. F., Robbertse, B. & Schoch, C., Mar 2019, In : Genome. 62, 3, p. 160-169

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Fungal biological resources to support international development: challenges and opportunities

Ryan, M., McCluskey, K., Verkley, G. J. M., Robert, V. & Smith, D., Sep 2019, In : World Journal of Microbiology and Biotechnology. 35, p. 139 13 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
Open Access

On the Emergence of Candida auris: Climate Change, Azoles, Swamps, and Birds

Casadevall, A., Kontoyiannis, D. P. & Robert, V., Jul 2019, In : mBio. 10, 4

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Phyllosticta citricarpa and sister species of global importance to Citrus

Guarnaccia, V., Gehrmann, T., Silva-Junior, G. J., Fourie, P. H., Haridas, S., Vu, D., Spatafora, J., Martin, F. M., Robert, V., Grigoriev, I. V., Groenewald, J. Z. & Crous, P. W., 01 Dec 2019, In : Molecular Plant Pathology. 20, 12, p. 1619-1635 17 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
2018

(F-007) PROPOSAL TO RECOMMEND THE USE OF AN IDENTIFIER AS AN ALTERNATIVE TO THE CITATION OF THE AUTHORS OF FUNGAL NAMES

Rambold, G., Bensch, K., Kirk, P. M., Yao, Y-J., Robert, V. & Triebel, D., Jun 2018, In : IMA Fungus. 9, 1, p. VI-VII

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Database establishment for the secondary fungal DNA barcode -Translational Elongation Factor 1α (TEF1α)

Meyer, W., Irinyi, L., Hoang, M. T. V., Robert, V., Garcia-Hermoso, D., Desnos-Ollivier, M., Yurayart, C., Tsang, C-C., Lee, C-Y., Woo, P. C. Y., Pchelin, I. M., Uhrlas, S., Nenoff, P., Chindamporn, A., Chen, S., Hebert, P. D. N. & Sorrell, T. C., 22 Nov 2018, In : Genome.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Early Ongoing Speciation of Ogataea uvarum Sp. Nov. Within the Grape Ecosystem Revealed by the Internal Variability Among the rDNA Operon Repeats

Roscini, L., Tristezza, M., Corte, L., Colabella, C., Perrotta, C., Rampino, P., Robert, V. A. R. G., Vu, D., Cardinali, G. & Grieco, F., 03 Aug 2018, In : Frontiers in Microbiology. p. 1687

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Fungal Stress Database (FSD)-a repository of fungal stress physiological data

Orosz, E., van de wiele, N., Emri, T., Zhou, M., Robert, V., de Vries, R. P. & Pocsi, I., 12 Feb 2018, In : DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Impact of Yeast Pigmentation on Heat Capture and Latitudinal Distribution

Cordero, R. J. B., Robert, V., Cardinali, G., Arinze, E. S., Thon, S. M. & Casadevall, A., 20 Aug 2018, In : Current Biology. 28, 16, p. 2657-2664.e3

Research output: Contribution to journal/periodicalArticleScientificpeer-review

NGS barcode sequencing in taxonomy and diagnostics, an application in "Candida" pathogenic yeasts with a metagenomic perspective

Colabella, C., Corte, L., Roscini, L., Bassetti, M., Mellor, J. C., Meyer, W., Robert, V. A. R. G., Vu, D. & Cardinali, G., 09 Jun 2018, In : IMA Fungus. p. 91-105 15 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

Wu, L., McCluskey, K., Desmeth, P., Liu, S., Hideaki, S., Yin, Y., Moriya, O., Itoh, T., Kim, C. Y., Lee, J-S., Zhou, Y., Kawasaki, H., Hazbón, M. H., Robert, V., Boekhout, T., Lima, N., Evtushenko, L., Boundy-Mills, K., Bunk, B., Moore, E. R. B. & 13 others, Eurwilaichitr, L., Ingsriswang, S., Shah, H., Yao, S., Jin, T., Huang, J., Shi, W., Sun, Q., Fan, G., Li, W., Li, X., Kurtböke, I. & Ma, J., 01 May 2018, In : GigaScience. 7, 5

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

The Yeasts, a new online and updatable platform for yeast diversity

Boekhout, T., Daniel, H. -M., Groenewald, M., Yurkov, A., Bai, F. -Y. & Robert, V., Jun 2018, Abstracts ISHAM 2018 - Supplement. Issue suppl_2 ed. Vol. 56. p. S153-S153 (Medical Mycology).

Research output: Chapter in book/volumeContribution to conference proceedingsScientificpeer-review

Open Access

Yeast Biofilm as a Bridge Between Medical and Environmental Microbiology Across Different Detection Techniques

Roscini, L., Vassiliou, A., Corte, L., Casagrande Pierantoni, D., Robert, V., Tascini, C., Mattana, S., Alunni Cardinali, M., Orfanos, S. E., Fioretto, D. & Cardinali, G., Mar 2018, In : Infectious Diseases and Therapy. 7, Suppl 1, p. 27-34 8 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
2017

Citation of a taxon name identifier issued by the ICN-recognized registration repositories instead of taxon name author citation

Rambold, G., Bensch, K., Kirk, P. M., Yao, Y-J., Robert, V., Sanz, V. & Triebel, D., Oct 2017, In : Taxon. 66, 5, p. 1200-1203

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus

de Vries, R. P., Riley, R., Wiebenga, A., Aguilar-Osorio, G., Amillis, S., Uchima, C. A., Anderluh, G., Asadollahi, M., Askin, M., Barry, K. W., Battaglia, E., Bayram, O., Benocci, T., Braus-Stromeyer, S. A., Caldana, C., Canovas, D., Cerqueira, G. C., Chen, F., Chen, W., Choi, C. & 97 others, Clum, A., Correa dos Santos, R. A., de Lima Damasio, A. R., Diallinas, G., Emri, T., Fekete, E., Flipphi, M., Freyberg, S., Gallo, A., Gournas, C., Habgood, R., Hainaut, M., Laura Harispe, M., Henrissat, B., Hilden, K. S., Hope, R., Hossain, A., Karabika, E., Karaffa, L., Karanyi, Z., Krasevec, N., Kuo, A., Kusch, H., LaButti, K. M., Lagendijk, E. L., Lapidus, A., Levasseur, A., Lindquist, E. A., Lipzen, A. M., Logrieco, A. F., Maccabe, A., Makela, M. R., Malavazi, I., Melin, P., Meyer, V., Mielnichuk, N., Miskei, M., Molnar, A. P., Mule, G., Ngan, C. Y., Orejas, M., Orosz, E., Ouedraogo, J. P., Overkamp, K. M., Park, H-S., Perrone, G., Piumi, F., Punt, P. J., Ram, A. F. J., Ramon, A., Rauscher, S., Record, E., Riano-Pachon, D. M., Robert, V., Roehrig, J., Ruller, R., Salamov, A., Salih, N. S., Samson, R. A., Sandor, E., Sanguinetti, M., Schutze, T., Sepcic, K., Shelest, E., Sherlock, G., Sophianopoulou, V., Squina, F., Sun, H., Susca, A., Todd, R. B., Tsang, A., Unkles, S. E., van de Wiele, N., van Rossen-Uffink, D., de Castro Oliveira, J. V., Vesth, T. C., Visser, J., Yu, J-H., Zhou, M., Andersen, M. R., Archer, D. B., Baker, S. E., Benoit, I., Brakhage, A. A., Braus, G. H., Fischer, R., Frisvad, J. C., Goldman, G. H., Houbraken, J., Oakley, B. R., Pocsi, I., Scazzocchio, C., Seiboth, B., vanKuyk, P. A., Wortman, J. R., Dyer, P. S. & Grigoriev, I. V., 14 Feb 2017, In : Genome Biology. 18

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

fMLC: Fast Multi-Level Clustering and Visualization of Large Molecular Datasets

Vu, D., Georgievska, S., Szoke, S., Kuzniar, A. & Robert, V., 15 Dec 2017, In : Bioinformatics.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Next Generation Sequencing: problems and opportunities for next generation studies of microbial communities in food and food industry

Oct 2017, In : Current Opinion in Food Science. p. 62 67 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Online Databases for Taxonomy and Identification of Pathogenic Fungi and Proposal for a Cloud-Based Dynamic Data Network Platform

Prakash, P. Y., Irinyi, L., Halliday, C., Chen, S., Robert, V. & Meyer, W., Apr 2017, In : Journal of Clinical Microbiology. 55, 4, p. 1011-1024

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

The Oleaginous Yeast Meyerozyma guilliermondii B1281A as a New Potential Biodiesel Feedstock: Selection and Lipid Production Optimization

Ramirez-Castrillon, M., Jaramillo-Garcia, V. P., Rosa, P. D., Landell, M. F., Duong Vu, N. V., Fabricio, M. F., Ayub, M. A. Z., Robert, V., Henriques, J. A. P. & Valente, P., 22 Sep 2017, In : Frontiers in Microbiology. 8

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
2016
Open Access

An Information System for European culture collections: the way forward

2016, In : SpringerPlus. 5, p. 1-11 11 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

BioloMICS Desktop Version 11

20 Dec 2016

Research output: Non-textual formSoftwareScientific

BioloMICS Help Manual Version 11

20 Dec 2016, BioAware. 1210 p.

Research output: Book/ReportBookScientific

BioloMICS Web Version 11

20 Dec 2016

Research output: Non-textual formSoftwareScientific

Current Opportunities and Challenges of Next Generation Sequencing (NGS) of DNA; Determining Health and Diseases

2016, In : British Medical Journal. 13, 4, p. 1-17 17 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

DNA barcoding analysis of more than 9 000 yeast isolates contributes to quantitative thresholds for yeast species and genera delimitation

Vu, D., Groenewald, M., Szöke, S., Cardinali, G., Eberhardt, U., Stielow, B., de Vries, M., Verkleij, G. J. M., Crous, P. W., Boekhout, T. & Robert, V., Sep 2016, In : Studies in Mycology. 85, p. 91-105 15 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Multiple Level Clustering Software

Szoke, S., Vu, D. & Robert, V. A. R. G., 2016

Research output: Non-textual formSoftwareScientific

Q‐collect: results of a European Union project to improve the status of reference collections important for plant health

2016, In : EPPO Bulletin. 46, 2, p. 348-358

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Sequence-based classification and identification of Fungi

2016, In : Mycologia. 108, 5, p. 16-130

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Veterinary Fusarioses within the United States

2016, In : Journal of Clinical Microbiology.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide

2016, In : Nucleic Acids Research. 44, 22

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access
2015

Advances in yeast systematics and phylogeny and their use as predictors of biotechnologically important metabolic pathways

Kurtzman, C. P., Mateo, R. Q., Kolecka, A., Theelen, B., Robert, V. & Boekhout, T., Sep 2015, In : FEMS Yeast Research. 15, 6

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Alternative barcodes for the identification of human and animal pathogenic fungi

2015, p. 231-231.

Research output: Contribution to conferenceAbstractScientific

Biodiversity bioinformatics, challenges and opportunities

Vu, D., 2015, Microbial Diversity 2015: The challenge of complexity. p. 145-149

Research output: Chapter in book/volumeChapterScientificpeer-review

BioloMICS Desktop Version 10

2015

Research output: Non-textual formSoftwareScientific

BioloMICS Version 10 Manual

2015, BioAware. 998 p.

Research output: Book/ReportBookProfessional

BioloMICS Web Version 10

2015

Research output: Non-textual formSoftwareScientific

bringing the its barcode in the ngs framework

2015, Microbial Diversity 2015: The challenge of complexity. p. 57-58

Research output: Chapter in book/volumeChapterScientificpeer-review

Distribution and impact of yeast thermal tolerance permissive for mammalian infection

26 Feb 2015, In : BMC Biology. 13, 1, 18 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

DNA sequence-based identification of Fusarium: Current status and future directions

Crous, P. W., 2015, In : Phytoparasitica. 43, 5, p. 583-595

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Fungal DNA Barcoding

2015, Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi. p. 37-56

Research output: Chapter in book/volumeChapterScientificpeer-review

ISHAM-ITS reference DNA barcoding database - the quality controlled standard tool for routine identification of human and animal pathogenic fungi

2015, In : Medical Mycology. 53, 4, p. 313-337

Research output: Contribution to journal/periodicalArticleScientificpeer-review

One fungus , which genes ? Development and assessment of universal primers for potential secondary fungal DNA barcodes

Stielow, J. B., Lévesque, C. A., Seifert, K. A., Meyer, W., Irinyi, L., Smits, D., Renfurm, R., Verkley, G. J. M., Groenewald, M., Chaduli, D., Lomascolo, A., Welti, S., Lesage-Meessen, L., Favel, A., Al-Hatmi, A. M. S., Damm, U., Yilmaz, N., Houbraken, J., Lombard, L., Quaedvlieg, W. & 43 others, Binder, M., Vaas, L. A. I., Vu, D., Yurkov, A., Begerow, D., Roehl, O., Guerreiro, M., Fonseca, A., Samerpitak, K., Diepeningen, A. D. V., Dolatabadi, S., Moreno, L. F., Casaregola, S., Mallet, S., Jacques, N., Roscini, L., Egidi, E., Bizet, C., Garcia-Hermoso, D., Martín, M. P., Deng, S., Groenewald, J. Z., Boekhout, T., Beer, Z. W. D., Barnes, I., Duong, T. A., Wingfield, M. J., Hoog, G. S. D., Crous, P. W., Lewis, C. T., Hambleton, S., Moussa, T. A. A., Al-Zahrani, H. S., Almaghrabi, O. A., Louis-Seize, G., Assabgui, R., McCormick, W., Omer, G., Dukik, K., Cardinali, G., Eberhardt, U., Vries, M. D. & Robert, V., 2015, In : Persoonia. 35, p. 242-263 22 p.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Simeon Vanev (1937-2015)

Robert, V., Dec 2015, In : IMA Fungus. 6, 2, p. 55-55

Research output: Contribution to journal/periodicalArticleScientificpeer-review

The use of FT-IR spectroscopy and ITS sequencing as useful tools for strain dereplication in medical environment

2015, Microbial Diversity 2015: The challenge of complexity. p. 103-104

Research output: Chapter in book/volumeChapterScientificpeer-review

2014

Exploring Sequence Alignment Algorithms on FPGA-based Heterogeneous Architectures

Chang, X., Escobar, F. A., Valderrama, C. & Robert, V., 2014, Proceedings IWBBIO 2014: International Work-Conference on Bioinformatics and Biomedical Engineering. Ortuno, F. & Rojas, I. (eds.). Granada, Vol. 1&2. p. 330-341 12 p.

Research output: Chapter in book/volumeContribution to conference proceedingsScientificpeer-review

Exploring Sequence Alignment Algorithms on FPGA-based Heterogeneous Architectures

Chang, X., Escobar, F. A., Valderrama, C. & Robert, V., 2014

Research output: Other contributionScientific

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Schoch, C. L., Robbertse, B., Robert, V., Duong Vu, N. V., Cardinali, G., Irinyi, L., Meyer, W., Nilsson, R. H., Hughes, K., Miller, A. N., Kirk, P. M., Abarenkov, K., Aime, M. C., Ariyawansa, H. A., Bidartondo, M., Boekhout, T., Buyck, B., Cai, Q., Chen, J., Crespo, A. & 81 others, Crous, P. W., Damm, U., De Beer, Z. W., Dentinger, B. T. M., Divakar, P. K., Duenas, M., Feau, N., Fliegerova, K., Garcia, M. A., Ge, Z-W., Griffith, G., Groenewald, J. Z., Groenewald, M., Grube, M., Gryzenhout, M., Gueidan, C., Guo, L., Hambleton, S., Hamelin, R., Hansen, K., Hofstetter, V., Hong, S-B., Houbraken, J., Hyde, K. D., Inderbitzin, P., Johnston, P. R., Karunarathna, S. C., Koljalg, U., Kovacs, G. M., Kraichak, E., Krizsan, K., Kurtzman, C. P., Larsson, K-H., Leavitt, S., Letcher, P. M., Liimatainen, K., Liu, J-K., Lodge, D. J., Luangsa-ard, J. J., Lumbsch, H. T., Maharachchikumbura, S. S. N., Manamgoda, D., Martin, M. P., Minnis, A. M., Moncalvo, J-M., Mule, G., Nakasone, K. K., Niskanen, T., Olariaga, I., Papp, T., Petkovits, T., Pino-Bodas, R., Powell, M. J., Raja, H. A., Redecker, D., Sarmiento-Ramirez, J. M., Seifert, K. A., Shrestha, B., Stenroos, S., Stielow, B., Suh, S-O., Tanaka, K., Tedersoo, L., Teresa Telleria, M., Udayanga, D., Untereiner, W. A., Dieguez Uribeondo, J., Subbarao, K. V., Vagvoelgyi, C., Visagie, C., Voigt, K., Walker, D. M., Weir, B. S., Weiss, M., Wijayawardene, N. N., Wingfield, M. J., Xu, J. P., Yang, Z. L., Zhang, N., Zhuang, W-Y. & Federhen, S., 30 Jun 2014, In : DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION.

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access

Massive fungal biodiversity data re-annotation with multi-level clustering

Duong Vu, Szoke, S., Wiwie, C., Baumbach, J., Cardinali, G., Rottger, R. & Robert, V., 30 Oct 2014, In : Scientific Reports. 4

Research output: Contribution to journal/periodicalArticleScientificpeer-review

Open Access