NWO-VIDI: Causes and consequences of heritable epigenetic variation in asexual plants

Research output

Research output per year 2011 2016 2018

• 23 Article

Research output per year

Research output per year

Search results

• 2018

  Costs and benefits of admixture between foreign genotypes and local populations in the field

  Shi, J., Joshi, J., Tielbörger, K., Verhoeven, K. J. F. & Macel, M., 05 Mar 2018, In: Ecology and Evolution. 8, 7

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  14 Citations (Scopus)

  235 Downloads (Pure)
• 2017

  Small RNAs reflect grandparental environments in apomictic dandelion: Letter

  Morgado, L., Preite, V., Oplaat, C., Anava, S., Ferreira de Carvalho, J. L., Rechavi, O., Johannes, F. & Verhoeven, K. J. F., 2017, In: Molecular Biology and Evolution. msx150.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Taraxacum 100%
  • RNA 60%
  • epigenetics 58%
  • Epigenomics 51%
  • gene 44%
  23 Citations (Scopus)

  280 Downloads (Pure)
• 2016

  Effects of multi-generational stress exposure and offspring environment on the expression and persistence of transgenerational effects in Arabidopsis thaliana

  Groot, M., Kooke, R., Knoben, N., Vergeer, P., Keurentjes, J., Ouborg, J. & Verhoeven, K. J. F., 2016, In: PLoS One. 11, 3, e0151566.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  49 Citations (Scopus)

  327 Downloads (Pure)

• epiGBS: reference-free reduced representation bisulfite sequencing: brief communication

  van Gurp, T. P., Wagemaker, N. CAM., Wouters, B., Vergeer, P., Ouborg, J. NJ. & Verhoeven, K. JF., 2016, In: Nature Methods. 13, 4, p. 322-324

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • hydrogen sulfite 100%
  • Communication 71%
  • Methylation 71%
  • Sequencing Method 39%
  • DNA Methylation 38%
  94 Citations (Scopus)

  17 Downloads (Pure)

• Epigenetics in ecology and evolution: what we know and what we need to know

  Verhoeven, K. J. F., vonHoldt, B. & Sork, V., 2016, In: Molecular Ecology. 25, 8, p. 1631-1638

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  194 Citations (Scopus)

  8 Downloads (Pure)

• Evidence from Pyrosequencing Indicates that Natural Variation in Animal Personality is Associated with DRD4 DNA Methylation

  Verhulst, E., Mateman, A. C., Zwier, M. V., Caro, S. P., Verhoeven, K. J. F. & van Oers, K., 2016, In: Molecular Ecology. 25, 8, p. 1801-1811

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Dopamine D4 Receptors 100%
  • dopamine receptors 88%
  • methylation 79%
  • personality 72%
  • DNA methylation 70%
  58 Citations (Scopus)

  357 Downloads (Pure)

• Evolutionary signals of selection on cognition from the great tit genome and methylome

  Laine, V., Gossmann, T. I., Schachtschneider, K. M., Garroway, C. J., Madsen, O., Verhoeven, K. J. F., de Jager, V. C. L., Megens, H-J., Warren, W. C., Minx, P., Crooijmans, R. P. M. A., Corcoran, P., Sheldon, B. C., Slate, J., Zeng, K., van Oers, K., Visser, M. E. & Groenen, M. A. M., 2016, In: Nature Communications. 7, 10474.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • cognition 100%
  • genome 89%
  • Epigenome 85%
  • learning 74%
  • methylation 72%
  152 Citations (Scopus)

  268 Downloads (Pure)

• Gene and transposable element methylation in great tit (Parus major) brain and blood

  Derks, M., Schachtschneider, K. M., Madsen, O., Schijlen, E. GWM., Verhoeven, K. J. F. & van Oers, K., 2016, In: BMC Genomics. 17, 332.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • DNA Transposable Elements 100%
  • Methylation 70%
  • CpG Islands 47%
  • Brain 38%
  • Genes 31%
  47 Citations (Scopus)

  295 Downloads (Pure)

• Genetic and epigenetic differences associated with environmental gradients in replicate populations of two salt marsh perennials

  Foust, C. M., Preite, V., Schrey, A. W., Alvarez, M., Robertson, M. H., Verhoeven, K. J. F. & Richards, C. L., 2016, In: Molecular Ecology. 25, 8, p. 1639-1652

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Wetlands 100%
  • salt marshes 81%
  • environmental gradient 80%
  • saltmarsh 75%
  • epigenetics 69%
  117 Citations (Scopus)

  321 Downloads (Pure)

• Heritable gene expression differences between apomictic clone members in Taraxacum officinale: : Insights into early stages of evolutionary divergence in asexual plants

  Ferreira de Carvalho, J. L., Oplaat, C., Pappas, N., Derks, M., de Ridder, D. & Verhoeven, K. J. F., 2016, In: BMC Genomics. 17, 1, p. 1-13

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  17 Citations (Scopus)

  203 Downloads (Pure)

• Identification of oligoclonal agamospermous microspecies: taxonomic specialists versus microsatellites.

  Kirschner, J., Oplaat, C., Verhoeven, K. J. F., Zeisek, V., Uhlemann, I., Trávnícek, B., Räsänen, J., Wilschut, R. A. & Štěpánek, J., 2016, In: Preslia. 88, p. 1-17

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  17 Citations (Scopus)

  90 Downloads (Pure)

• Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage

  Wilschut, R. A., Oplaat, C., Snoek, B., Kirschner, J. & Verhoeven, K. J. F., 2016, In: Molecular Ecology. 25, 8, p. 1759-1768

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Taraxacum 100%
  • flowering 71%
  • flowering time 62%
  • epigenetics 58%
  • divergence 51%
  77 Citations (Scopus)

  485 Downloads (Pure)

• Recent and dynamic transposable elements contribute to genomic divergence under asexuality

  Ferreira de Carvalho, J. L., de Jager, V. C. L., Van Gurp, T. P., Wagenmaker, N. & Verhoeven, K. J. F., 2016, In: BMC Genomics. 17, 884.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • DNA Transposable Elements 100%
  • Genome 17%
  • Retroelements 17%
  • Taraxacum 11%
  • hydrogen sulfite 8%
  21 Citations (Scopus)

  136 Downloads (Pure)
• 2015

  Adaptive plasticity and epigenetic variation in response to warming in an Alpine plant

  Nicotra, A. B., Segal, D. L., Hoyle, G. L., Schrey, A. W., Verhoeven, K. J. F. & Richards, C. L., 2015, In: Ecology and Evolution. 5, 3, p. 634-647

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  89 Citations (Scopus)

  237 Downloads (Pure)

• Range expansion in asexual dandelions: selection for general-purpose genotypes?

  Oplaat, C. & Verhoeven, K., 2015, In: Journal of Ecology. 103, 1, p. 261-268

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Taraxacum 100%
  • range expansion 94%
  • Taraxacum officinale 87%
  • genotype 82%
  • phenotypic plasticity 69%
  15 Citations (Scopus)

  110 Downloads (Pure)

• The epigenetic footprint of poleward range-expanding plants in apomictic dandelions

  Preite, V., Snoek, L. B., Oplaat, C., Biere, A., Van der Putten, W. H. & Verhoeven, K. J. F., 2015, In: Molecular Ecology. 24, 17, p. 4406-4418

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Taraxacum 100%
  • methylation 70%
  • epigenetics 58%
  • footprint 57%
  • DNA methylation 54%
  42 Citations (Scopus)

  11 Downloads (Pure)
• 2014

  Epigenetic variation in asexually reproducing organisms

  Verhoeven, K. J. F. & Preite, V., 2014, In: Evolution. 68, 3, p. 644-655

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  • asexual reproduction 100%
  • epigenetics 89%
  • Epigenomics 78%
  • sexual reproduction 63%
  • organism 61%
  175 Citations (Scopus)

  4 Downloads (Pure)
• 2013

  Chytrid epidemics may increase genetic diversity of a diatom spring-bloom

  Gsell, A. S., De Senerpont Domis, L. N., Verhoeven, K. J. F., Van Donk, E. & Ibelings, B. W., 2013, In: ISME Journal. 7, 10, p. 2057-2059

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File
  49 Citations (Scopus)

  391 Downloads (Pure)

• Consistent errors in first strand cDNA due to random hexamer mispriming

  Van Gurp, T. P., McIntyre, L. M. & Verhoeven, K. J. F., 2013, In: PLoS One. 8, 12, e85583.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • RNA 100%
  • DNA 19%
  • distribution 8%
  30 Citations (Scopus)

  362 Downloads (Pure)

• Geographic parthenogenesis and plant-enemy interactions in the common dandelion

  Verhoeven, K. J. F. & Biere, A., 2013, In: BMC Evolutionary Biology. 13, p. 23

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • parthenogenesis 100%
  • Taraxacum officinale 82%
  • pest 54%
  • pathogen 44%
  • Taraxacum 34%
  34 Citations (Scopus)

  220 Downloads (Pure)

• Plants Know Where It Hurts: Root and Shoot Jasmonic Acid Induction Elicit Differential Responses in Brassica oleracea

  Tytgat, T., Verhoeven, K. J. F., Jansen, J. J., Raaijmakers, C. E., Bakx-Schotman, J. M. T., McIntyre, L. M., Van der Putten, W. H., Biere, A. & Van Dam, N. M., 2013, In: PLoS One. 8, 6, e65502.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Brassica oleracea 100%
  • jasmonic acid 92%
  • shoots 56%
  • herbivores 43%
  • metabolism 14%
  64 Citations (Scopus)

  354 Downloads (Pure)
• 2012

  Transgenerational effects of stress exposure on offspring phenotypes in apomictic dandelion

  Verhoeven, K. J. F. & Van Gurp, T. P., 2012, In: PLoS One. 7, 6, e38605.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Taraxacum 100%
  • DNA methylation 60%
  • phenotype 49%
  • nutrients 45%
  • epigenetics 37%
  101 Citations (Scopus)

  315 Downloads (Pure)
• 2011

  Population admixture, biological invasions and the balance between local adaptation and inbreeding depression

  Verhoeven, K. J. F., Macel, M., Wolfe, L. M. & Biere, A., 2011, In: Proceedings of the Royal Society B-Biological Sciences. 278, 1702, p. 2-8 7 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  226 Citations (Scopus)

  5 Downloads (Pure)