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• Article

  Model complexity and performance: how far can we simplify?

  Raick, C., Soetaert, K. E. R. & Grégoire, M., 2006, In: Progress in Oceanography. 70, 1, p. 27-57

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  1 Downloads (Pure)

• Modeled changes of cerebellar activity in mutant mice are predictive of their learning impairments.

  Badura, A., Clopath, C., Schonewille, M. & De Zeeuw, C. I., 02 Nov 2016, In: Scientific Reports. 6, 36131.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  149 Downloads (Pure)

• Modeling 210Pb-derived mixing activity in ocean margin sediments: Diffusive versus nonlocal mixing

  Soetaert, K. E. R., Herman, P. M. J., Middelburg, J. J., Heip, C. H. R., De Stigter, H., Van Weering, T. C. E., Epping, E. & Helder, W., 1996, In: Journal of Marine Research. 54, 6, p. 1207-1227

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling approaches to the indirect estimation of migration flows: from entropy to EM

  Willekens, F. J., 1999, In: Mathematical Population Studies. 7, p. 239-278

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling biogeochemical processes in sediments from the Rhône River prodelta area (NW Mediterranean Sea)

  Pastor, L., Cathalot, C., Deflandre, B., Viollier, E., Soetaert, K., Meysman, F. J. R., Ulses, C., Metzger, E. & Rabouille, C., 2011, In: Biogeosciences. 8, 5, p. 1351-1366

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  286 Downloads (Pure)

• Modeling bio-geomorphological influences for offshore sandwaves

  Borsje, B. W., De Vries, M. B., Bouma, T. J., Besio, G., Hulscher, S. J. M. H. & Herman, P. M. J., 2009, In: Continental Shelf Research. 29, 9, p. 1289-1301

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling biomass and oxygen dynamics of Prochlorothrix hollandica in laboratory-scale enclosures

  Auer, M. T. & Rijkeboer, M., 1991, In: Verhandlungen Internationale Vereinigung für Theoretische und Angewandte Limnologie. 24, p. 738-741

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling breast cancer using CRISPR/Cas9-mediated engineering of human breast organoids

  Dekkers, J. F., Whittle, J. R., Vaillant, F., Chen, H-R., Dawson, C., Liu, K., Geurts, M., Herold, M. J., Clevers, H., Lindeman, G. J. & Visvader, J. E., 07 Oct 2019, (E-pub ahead of print) In: Journal of the National Cancer Institute.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling Conflict: Representations of Social Groups in Present-Day Dutch Literature

  Smeets, R., De Pourcq, M. & van den Bosch, A., 10 Jun 2021, In: Journal of Cultural Analytics. 6, p. 1-31

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Modeling Daphnia population dynamics and demography under natural conditions

  Mooij, W. M., Hülsmann, S., Vijverberg, J., Veen, A. & Lammens, E. H. R. R., 2003, In: Hydrobiologia. 491, 1-3, p. 19-34

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  3 Downloads (Pure)

• Modeling Development and Disease with Organoids

  Clevers, H., 16 Jun 2016, In: Cell. 165, 7, p. 1586-97 12 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Modeling early Parkinson's disease pathology with chronic low dose MPTP treatment.

  Korecka, J. A., Eggers, R., Swaab, D. F., Bossers, K. & Verhaagen, J., 2013, In: Restorative Neurology and Neuroscience. 31, p. 155-167

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling eutrophication and oligotrophication of shallow-water marine systems: the importance of sediments under stratified and well-mixed conditions

  Soetaert, K. E. R. & Middelburg, J. J., 2009, In: Hydrobiologia. 629, 1, p. 239-254

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  327 Downloads (Pure)

• Modeling food web interactions in benthic deep-sea ecosystems. A practical guide

  Soetaert, K. E. R. & Van Oevelen, D. J., 2009, In: Oceanography. 22, 1, p. 128-143

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  367 Downloads (Pure)

• Modeling growth, carbon allocation and nutrient budgets of Phragmites australis in Lake Burullus, Egypt

  Eid, E. M., Shaltout, K. H., Al-Sodany, Y. M., Soetaert, K. E. R. & Jensen, K., 2010, In: Wetlands. 30, 2, p. 240-251

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling growth and carbon allocation in two reed beds (Phragmites australis) in the Scheldt estuary

  Soetaert, K. E. R., Hofmann, M., Meire, P., Starink, M., Van Oevelen, D., Van Regenmortel, S. & Cox, T. J. S., 2004, In: Aquatic Botany. 79, 3, p. 211-234

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  2 Downloads (Pure)

• Modeling historical evidence in digital maps: A preliminary sketch

  van den Heuvel, C., 2006, In: e-Perimetron. 1, 2, p. 113-126

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling Human Digestive Diseases With CRISPR-Cas9-Modified Organoids

  Fujii, M., Clevers, H. & Sato, T., 23 Nov 2018, (E-pub ahead of print) In: Gastroenterology.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling interregional migration flows: continuity and change

  Rogers, A., Willekens, F. J. & Raymer, J., 2001, In: Mathematical Population Studies. 9, p. 231-263

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  1 Downloads (Pure)

• Modeling invariant object processing based on tight integration of simulated and empirical data in a common brain space.

  Peters, J. C., Reithler, J. & Goebel, R., 2012, In: Frontiers in Computational Neuroscience. 6, p. 12

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Modeling lakes and reservoirs in the climate system

  MacKay, M. D., Neale, P. J., Arp, C. D., De Senerpont Domis, L. N., Fang, X., Gal, G., Jöhnk, K. D., Kirillin, G., Lenters, J. D., Litchman, E., MacIntyre, S., Marsh, P., Melack, J., Mooij, W. M., Peeters, F., Quesada, A., Schladow, S. G., Schmid, M., Spence, C. & Stokes, S. L., 2009, In: Limnology and Oceanography. 54, 6, p. 2315-2329

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  3 Downloads (Pure)

• Modeling motor neuron disease: the matter of time

  Arbab, M., Baars, S. & Geijsen, N., Nov 2014, In: Trends in Neurosciences. 37, 11, p. 642-52 11 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling multipartite virus evolution: the genome formula facilitates rapid adaptation to heterogeneous environments

  Zwart, M. & Elena, S. F., 08 May 2020, In: Virus Evolution. 6, 1

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  49 Downloads (Pure)

• Modeling of the responses to nitrogen availability of two Plantago species grown at a range of exponential nutrient addition rates

  Hirose, T., Freijsen, A. H. J. & Lambers, H., 1988, In: Plant Cell and Environment. 11, 9, p. 827-834

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling pancreatic cancer with organoids

  Baker, L. A., Tiriac, H., Clevers, H. & Tuveson, D. A., Apr 2016, In: Trends in Cancer. 2, 4, p. 176-190 15 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling reactive transport in sediments subject to bioturbation and compaction

  Meysman, F. J. R., Boudreau, B. P. & Middelburg, J. J., 2005, In: Geochimica et Cosmochimica Acta. 69, 14, p. 3601-3617

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling Science: Studying the Structure and Dynamics of Science, Editorial of a special issue

  Börner, K., Glänzel, W. & Scharnhorst, A., 2011, In: Scientometrics. 89, S1, p. 347-348 2 p.

  Research output: Contribution to journal/periodical › Article › Scientific

• Modeling the auxiliary phrase asymmetry in code-switched Spanish–English

  Tsoukala, C., Frank, S., van den Bosch, A., Valdés Kroff, J. & Broersma, M., 24 Aug 2020, In: Bilingualism: Language and Cognition. p. 1-10

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Modeling the dynamic regulation of nitrogen fixation in the cyanobacterium Trichodesmium sp.

  Rabouille, S. A. M., Staal, M. J., Stal, L. J. & Soetaert, K. E. R., 2006, In: Applied and Environmental Microbiology. 72, 5, p. 3217-3227

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling the influence of environmental heterogeneity on heavy metal exposure concentrations for terrestrial vertebrates in river floodplains

  Schipper, A. M., Loos, M., Ragas, A. M. J., Lopes, J. P. C., Nolte, B. T., Wijnhoven, S. & Leuven, R. S. E. W., 2008, In: Environmental Toxicology and Chemistry. 27, 4, p. 919-932

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  1 Downloads (Pure)

• Modeling the nitrogen cycling and plankton productivity in the Black Sea using a three-dimensional interdisciplinary model

  Grégoire, M., Soetaert, K. E. R., Nezlin, N. & Kostianoy, A., 2004, In: Journal of Geophysical Research. 109, C5, C05007.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  334 Downloads (Pure)

• Modeling the nitrogen fluxes in the Black Sea using a 3D coupled hydrodynamical-biogeochemical model: transport versus biogeochemical processes, exchanges across the shelf break and comparison of the shelf and deep sea ecodynamics

  Grégoire, M. & Beckers, J. M., 2004, In: Biogeosciences. 1, 1, p. 33-61

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modeling water quality in the Anthropocene: Directions for the next-generation aquatic ecosystem models

  Mooij, W. M., van Wijk, D., Beusen, A. HW., Brederveld, R. J., Chang, M., Cobben, M. M. P., DeAngelis, D. L., Downing, A. S., Green, P., Gsell, A. S., Huttunen, I., Janse, J. H., Janssen, A. B. G., Hengeveld, G. M., Kong, X., Kramer, L., Kuiper, J. J., Langan, S. J., Nolet, B. A., Nuijten, R. J. M., & 4 othersStrokal, M., Troost, T. A., Dam, A. M. V. & Teurlincx, S., 2019, In: Current Opinion in Environmental Sustainability. 36, February, p. 85-95

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  162 Downloads (Pure)

• Modeling winter moth Operophtera brumata egg phenology: nonlinear effects of temperature and developmental stage on developmental rate

  Salis, L., Lof, M., Van Asch, M. & Visser, M. E., Dec 2016, In: Oikos. 125, 12, p. 1772-1781

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  261 Downloads (Pure)

• Modelling and projecting the response of local assemblage composition to land use change across Colombia

  Echeverria-Londono, S., Newbold, T., Hudson, L. N., Contu, S., Hill, S. L. L., Lysenko, I., Arbelaez-Cortes, E., Armbrecht, I., Boekhout, T., Cabra-Garcia, J., Dominguez-Haydar, Y., Nates-Parra, G., Gutierrez-Lamus, D. L., Higuera, D., Johanna Isaacs-Cubides, P., Lopez-Quintero, C. A., Martinez, E., Rafael Miranda-Esquivel, D., Eduardo Navarro-Iriarte, L., Ari Noriega, J., & 9 othersEduardo Otavo, S., Parra-H, A., Poveda, K., Ramirez-Pinilla, M. P., Carlos Rey-Velasco, J., Rosselli, L., Smith-Pardo, A. H., Nicolas Urbina-Cardona, J. & Purvis, A., Nov 2016, In: Diversity and Distributions. 22, 11, p. 1099-1111

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling and simulating decision processes of linked lives: An approach based on concurrent processes and stochastic race

  Warnke, T., Reinhardt, O., Klabunde, A., Willekens, F. J. & Uhrmacher, A., 2017, In: Population Studies: a journal of demography. 71, S1, p. S69-S83

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  558 Downloads (Pure)

• Modelling behavioural and fitness consequences of disturbance for geese along their spring flyway

  Klaassen, M. R. J., Bauer, S., Madsen, J. & Tombre, I., 2006, In: Journal of Applied Ecology. 43, 1, p. 92-100

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  1 Downloads (Pure)

• Modelling C and N mineralisation in soil food webs during secondary succession on ex-arable land

  Holtkamp, R., Van der Wal, A., Kardol, P., Van der Putten, W. H., de Ruiter, P. C. & Dekker, S. C., 2011, In: Soil Biology & Biochemistry. 43, 2, p. 251-260

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling Cryptosporidium infection in human small intestinal and lung organoids

  Heo, I., Dutta, D., Schaefer, D. A., Iakobachvili, N., Artegiani, B., Sachs, N., Boonekamp, K. E., Bowden, G., Hendrickx, A. P. A., Willems, R. J. L., Peters, P. J., Riggs, M. W., O'Connor, R. & Clevers, H., Jul 2018, In: Nature Microbiology. 3, 7, p. 814-823 10 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling Folksong Melodies

  Wiering, F., Veltkamp, R. C., Garbers, J., Volk, A., van Kranenburg, P. & Grijp, L. P., 2009, In: Interdisciplinary Science Reviews. 34, 2-3, p. 154-171

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  415 Downloads (Pure)

• Modelling induced bank filtration effects on freshwater ecosystems to ensure sustainable drinking water production

  Gillefalk, M., Mooij, W. M., Teurlincx, S., Janssen, A. B. G., Janse, J. H., Chang, M., Köhler, J. & Hilt, S., 2019, In: Water Research. 157, p. 19-29 11 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  3 Downloads (Pure)

• Modelling nutrient cycles in relation to food web structure in a biomanipulated shallow lake

  Janse, J. H., Van Donk, E. & Gulati, R. D., 1995, In: Netherlands Journal of Aquatic Ecology. 29, p. 67-79

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  2 Downloads (Pure)

• Modelling of primary ciliary dyskinesia using patient-derived airway organoids

  van der Vaart, J., Böttinger, L., Geurts, M. H., van de Wetering, W. J., Knoops, K., Sachs, N., Begthel, H., Korving, J., Lopez-Iglesias, C., Peters, P. J., Eitan, K., Gileles-Hillel, A. & Clevers, H., 06 Dec 2021, In: EMBO Reports. 22, 12, p. e52058

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

• Modelling phenotypic flexibility: an optimality analysis of gizzard size in Red Knots (Calidris canutus)

  Van Gils, J. A., Piersma, T., Dekinga, A. & Battley, P. F., 2006, In: Ardea. 94, 3, p. 409-420

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling photosynthesis-irradiance curves: effects of temperature, dissolved silica depletion and changing community assemblage on community photosynthesis

  Cox, T. J. S., Soetaert, K. E. R., Vanderborght, J. P., Kromkamp, J. C. & Meire, P., 2010, In: Limnology and Oceanography Methods. 8, p. 424-440

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review
  1 Downloads (Pure)

• Modelling sugar diffusion across plant leaf cuticles: the effect of free water on substrate availability to phyllosphere bacteria

  Van der Wal, A. & Leveau, J. H. J., 2011, In: Environmental Microbiology. 13, 3, p. 792-797

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling the effects of chlorophyll fluorescence from subsurface layers on photosynthetic efficiency measurements in microphytobenthic algae

  Forster, R. M. & Kromkamp, J. C., 2004, In: Marine Ecology Progress Series. 284, p. 9-22

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  276 Downloads (Pure)

• Modelling the Mechanical Parameters of Glaucoma

  Vroemen, P. A. M. M., Gorgels, T. G. M. F., Webers, C. A. B. & de Boer, J., 01 Apr 2019, In: Tissue Engineering - Part B: Reviews. 25, p. 412-428

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling the multidimensional niche by linking functional traits to competitive performance

  Maynard, D. S., Leonard, K. E., Drake, J. M., Hall, D. W., Crowther, T. W. & Bradford, M. A., 2015, In: Proceedings of the Royal Society B-Biological Sciences. 282, 1811, p. 1-9 9 p.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

• Modelling the spatial dynamics of Maui dolphins using individual-based models

  de Jager, M., Hengeveld, G. M., Mooij, W. M. & Slooten, L., 24 Jun 2019, In: Ecological Modelling. 402, p. 59-65

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

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  146 Downloads (Pure)