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• 2019

  Environmental filtering: A case of bacterial community assembly in soil

  Yan, Y., Klinkhamer, P. G. L., van Veen, J. A. & Kuramae, E. E., 2019, In: Soil Biology & Biochemistry. 136, 107531.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Soil
  • bacterial communities
  • soil
  • Suspensions
  • abiotic factor
  1 Downloads (Pure)

• High-level abundance of Methanobacteriales and Syntrophobacterales may help to prevent corrosion of metal sheet piles

  in 't Zandt, M. H., Kip, N., Frank, J., Jansen, S., van Veen, J. A., Jetten, M. S. M. & Welte, C. U., 2019, In: Applied and Environmental Microbiology. 85, 20, AEM.01369-19.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Methanobacteriales
  • Syntrophobacterales
  • Corrosion
  • corrosion
  • pile

• Moisture is more important than Temperature for Assembly of Both Potentially Active and Whole Prokaryotic Communities in Subtropical Grassland

  Lupatini, M., Suleiman, A. K. A., Jacques, R. J. S., Pylro, V. S., van Veen, J. A., Kuramae, E. E. & Roesch, L. F. W., 2019, In: Microbial Ecology. 77, 2, p. 460-470

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • grasslands
  • grassland
  • moisture
  • microbial communities
  • niches

• Nitrification inhibitors effectively target N2O-producing Nitrosospira spp. in tropical soil

  Cassman, N., Soares, J. R., Pijl, A. S., Lourenço, K. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2019, In: Environmental Microbiology. 21, 4, p. 1241-1254

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Nitrification
  • Nitrosospira
  • nitrification inhibitors
  • tropical soils
  • tropical soil
  386 Downloads (Pure)
• 2018

  Co-variation of bacterial and fungal communities in different sorghum cultivars and growth stages is soil dependent

  Schlemper, T. R., van Veen, J. A. & Kuramae, E. E., 2018, In: Microbial Ecology. 76, 1, p. 205-214

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • sorghum
  • cultivar
  • fungal communities
  • bacterial communities
  • community composition
  300 Downloads (Pure)

• Dominance of bacterial ammonium oxidizers and fungal denitrifiers in the complex nitrogen cycle pathways related to nitrous oxide emission

  Lourenço, K. S., Dimitrov, M., Pijl, A. S., Soares, J. R., do Carmo, J. B., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In: GCB Bioenergy. 10, 9, p. 645-660

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • nitrous oxide production
  • nitrogen cycle
  • Nitrification
  • Bacteria
  • Denitrification
  506 Downloads (Pure)

• Effect of Burkholderia tropica and Herbaspirillum frisingense strains on sorghum growth is plant genotype dependent

  Schlemper, T. R., Dimitrov, M., Silva Gutierrez, F., van Veen, J. A., Silveira, A. P. D. & Kuramae, E. E., 2018, In: PeerJ. 6, e5346.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Herbaspirillum frisingense
  • Herbaspirillum
  • Sorghum
  • Burkholderia
  • Genotype
  265 Downloads (Pure)

• Nitrosospira sp. govern nitrous oxide emissions in a tropical soil amended with residues of bioenergy crop

  Lourenço, K. S., Cassman, N., Pijl, A. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In: Frontiers in Microbiology. 9, 674.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Fertilizers
  • Nitrous Oxide
  • Soil
  • Ammonia
  • Bacteria
  217 Downloads (Pure)

• Resilience of the resident soil microbiome to organic and inorganic amendment disturbances and to temporary bacterial invasion

  Lourenço, K. S., Suleiman, A. K. A., Pijl, A. S., van Veen, J. A., Cantarella, H. & Kuramae, E. E., 2018, In: Microbiome. 6, 142.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Soil
  • Microbiota
  • Saccharum
  • Fertilizers
  • Acetobacteraceae
  222 Downloads (Pure)
• 2017

  Characterization of novel Acidobacteria exopolysaccharides with potential industrial and ecological applications

  Kielak, A. M., Castellane, T. C. L., Campanharo, J. C., Colnago, L. A., Costa, O. Y. A., Corradi da Silva, M. L., van Veen, J. A., Lemos, E. G. & Kuramae, E. E., 2017, In: Scientific Reports. 7, 41193.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Industrial applications
  • Soils
  • xanthan gum
  • Sunflower Oil
  • Extracellular Polymeric Substance Matrix
  226 Downloads (Pure)

• Functional traits dominate the diversity-related selection of bacterial communities in the rhizosphere

  Yan, Y., Kuramae, E. E., De Hollander, M., Klinkhamer, P. G. L. & van Veen, J. A., 2017, In: ISME Journal. 11, p. 56-66

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Rhizosphere
  • bacterial communities
  • rhizosphere
  • Soil
  • soil
  31 Downloads (Pure)

• Methanogens predominate in natural corrosion protective layers on metal sheet piles.

  Kip, N., Jansen, S., Leite, M. F. A., De Hollander, M., Afanasyev, M., Kuramae, E. E. & van Veen, J. A., 2017, In: Scientific Reports. 7, 11899.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • pile
  • corrosion
  • metal
  • mineral
  • soil
  235 Downloads (Pure)

• Rhizobacterial community structure differences among sorghum cultivars in different growth stages and soils

  Schlemper, T. R., Leite, M. F. A., Reis Lucheta, A., Shimels, M., Bouwmeester, H. J., van Veen, J. A. & Kuramae, E. E., 2017, In: FEMS Microbiology Ecology. 93, 8, fix096.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Sorghum
  • Rhizosphere
  • sorghum
  • cultivar
  • Soil
  3 Downloads (Pure)

• Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

  Hannula, S. E., Morriën, E., De Hollander, M., van der Putten, W. H., van Veen, J. A. & De Boer, W., 2017, In: ISME Journal. 11, p. 2294-2304

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Mycobiome
  • Rhizosphere
  • secondary succession
  • fungal communities
  • Agriculture
  281 Downloads (Pure)

• Soil networks become more connected and take up more carbon as nature restoration progresses

  Morriën, E., Hannula, S. E., Snoek, B., Helmsing, N. R., Zweers, H., De Hollander, M., Lujan Soto, R., Bouffaud, M. L., Buée, M., Dimmers, W., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jørgensen, H-B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., Schmidt, O. & 12 others, Thomson, B. C., Tisserant, E., Uroz, S., Winding, A., Bailey, M. J., Bonkowski, M., Faber, J. H., Martin, F., Lemanceau, P., De Boer, W., van Veen, H. & van der Putten, W. H., 2017, In: Nature Communications. 8, 14349.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Soil
  • restoration
  • soils
  • Carbon
  • Restoration
  263 Downloads (Pure)

• Successive DNA extractions improve characterization of soil microbial communities

  Dimitrov, M. R., Veraart, A. J., De Hollander, M., Smidt, H., van Veen, J. A. & Kuramae, E. E., 2017, In: PeerJ. 5, e2915.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Soil
  • Microbiota
  • microbial communities
  • Soils
  • DNA
  483 Downloads (Pure)
• 2016

  Bacterial community succession in pine-wood decomposition

  Kielak, A., Scheublin, T., Mendes, L. W., Van Veen, J. A. & Kuramae, E. E., 2016, In: Frontiers in Microbiology. 7, 00231.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Mycobiome
  • Stochastic Processes
  • Bacteria
  • Fungi
  228 Downloads (Pure)

• Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

  Bai, Y., Eijsink, V. G. H., Kielak, A. M., Van Veen, J. A. & De Boer, W., 2016, In: Environmental Microbiology. 18, 1, p. 38-49

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  • Chitinases
  • aquatic bacteria
  • chitinase
  • genomics
  • chitin
  12 Downloads (Pure)

• Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland.

  Cassman, N., Leite, M. F. A., Pan, Y., De Hollander, M., van Veen, J. A. & Kuramae, E. E., 2016, In: Scientific Reports. 6, 23680.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • fungal communities
  • soil bacteria
  • plant communities
  • liming
  • grasslands
  245 Downloads (Pure)

• Primer Sets Developed for Functional Genes Reveal Shifts in Functionality of Fungal Community in Soils

  Hannula, S. E. & van Veen, J. A., 2016, In: Frontiers in Microbiology. 7, fmicb.2016.01897.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Mycobiome
  • Soil
  • Agriculture
  • Genes
  • Carbon
  142 Downloads (Pure)

• The ecology of Acidobacteria: moving beyond genes and genomes

  Kielak, A. M., Barreto, C. C., Kowalchuk, G. A., van Veen, J. A. & Kuramae, E. E., 2016, In: Frontiers in Microbiology. 744.

  Research output: Contribution to journal/periodical › Article › Scientific › peer-review

  Open Access

  File

  • Acidobacteria
  • Ecology
  • Soil
  • Genome
  • Metagenomics
  427 Downloads (Pure)