code from: Reconciling contrasting effects of nitrogen on host immunity and pathogen transmission using stoichiometric models

D.B. van de Waal (Developer), Lauren A. White (Developer), Rebecca A. Everett (Developer), Lale Asik (Developer), Elizabeth T. Borer (Developer), Thijs Frenken (Developer), Angélica L. González (Developer), Rachel Paseka (Developer), Eric W. Seabloom (Developer), Alexander T. Strauss (Developer), Angela Peace (Developer)

Research output: Non-textual formSoftwareScientific

Abstract

Hosts rely on the availability of nutrients for growth, and for defense against pathogens. At the same time, changes in host nutrition can alter the dynamics of pathogens that rely on their host for reproduction. For primary producer hosts, enhanced nutrient loads may increase host biomass or pathogen reproduction, promoting faster density-dependent pathogen transmission. However, the effect of elevated nutrients may be reduced if hosts allocate a growth-limiting nutrient to pathogen defense. In canonical disease models, transmission is not a function of nutrient availability. Yet, including nutrient availability is necessary to mechanistically understand the response of infection to changes in the environment. Here, we explore the implications of nutrient-mediated pathogen infectivity and host immunity on infection outcomes. We developed a stoichiometric disease model that explicitly integrates the contrasting dependencies of pathogen infectivity and host immunity on nitrogen (N) and parameterized it for an algal-host system. Our findings reveal dynamic shifts in host biomass build-up, pathogen prevalence, and the force of infection along N supply gradients with N-mediated host infectivity and immunity, compared with a model in which the transmission rate was fixed. We show contrasting responses in pathogen performance with increasing N supply between N-mediated infectivity and N-mediated immunity, revealing an optimum for pathogen transmission at intermediate N supply. This was caused by N limitation of the pathogen at a low N supply and by pathogen suppression via enhanced host immunity at a high N supply. By integrating both nutrient-mediated pathogen infectivity and host immunity into a stoichiometric model, we provide a theoretical framework that is a first step in reconciling the contrasting role nutrients can have on host–pathogen dynamics.

Original languageEnglish
PublisherZenodo
DOIs
Publication statusPublished - 11 Sept 2023

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