Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

TY - JOUR

T1 - Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil

AU - Rice, Marlen C.

AU - Norton, Jeanette M.

AU - Valois, Frederica

AU - Bollmann, Annette

AU - Bottomley, Peter J.

AU - Klotz, Martin G.

AU - Laanbroek, Hendrikus J.

AU - Suwa, Yuichi

AU - Stein, Lisa Y.

AU - Sayavedra-Soto, Luis

AU - Woyke, Tanja

AU - Shapiro, Nicole

AU - Goodwin, Lynne A.

AU - Huntemann, Marcel

AU - Clum, Alicia

AU - Pillay, Manoj

AU - Kyrpides, Nikos

AU - Varghese, Neha

AU - Mikhailova, Natalia

AU - Markowitz, Victor

AU - Palaniappan, Krishna

AU - Ivanova, Natalia

AU - Stamatis, Dimitrios

AU - Reddy, T. B. K.

AU - Ngan, Chew Yee

AU - Daum, Chris

N1 - 6189, ME; Data Archiving: data archived at GOLD (Genomes Online Database) and belongs to Utah State University

PY - 2016

Y1 - 2016

N2 - Nitrosospira briensis C-128 is an ammonia-oxidizing bacterium isolated from an acid agricultural soil. N. briensis C-128 was sequenced with PacBio RS technologies at the DOE-Joint Genome Institute through their Community Science Program (2010). The high-quality finished genome contains one chromosome of 3.21 Mb and no plasmids. We identified 3073 gene models, 3018 of which are protein coding. The two-way average nucleotide identity between the chromosomes of Nitrosospira multiformis ATCC 25196 and Nitrosospira briensis C-128 was found to be 77.2 %. Multiple copies of modules encoding chemolithotrophic metabolism were identified in their genomic context. The gene inventory supports chemolithotrophic metabolism with implications for function in soil environments.

AB - Nitrosospira briensis C-128 is an ammonia-oxidizing bacterium isolated from an acid agricultural soil. N. briensis C-128 was sequenced with PacBio RS technologies at the DOE-Joint Genome Institute through their Community Science Program (2010). The high-quality finished genome contains one chromosome of 3.21 Mb and no plasmids. We identified 3073 gene models, 3018 of which are protein coding. The two-way average nucleotide identity between the chromosomes of Nitrosospira multiformis ATCC 25196 and Nitrosospira briensis C-128 was found to be 77.2 %. Multiple copies of modules encoding chemolithotrophic metabolism were identified in their genomic context. The gene inventory supports chemolithotrophic metabolism with implications for function in soil environments.

KW - international

UR - https://gold.jgi.doe.gov/index

U2 - 10.1186/s40793-016-0168-4

DO - 10.1186/s40793-016-0168-4

M3 - Article

SN - 1944-3277

VL - 11

SP - 46

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 1

ER -