Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

A. Bollmann; C.J. Sedlacek; J. Norton; H.J. Laanbroek; Y. Suwa; L.Y. Stein; M.G. Klotz; D. Arp; L. Sayavedra-Soto; M. Lu; D. Bruce; C. Detter; R. Tapia; J. Han; T. Woyke; S. Lucas; S. Pitluck; L. Pennacchio; M. Nolan; M.L. Land; M. Huntemann; S. Deshpande; C. Han; A. Chen; N. Kyrpides; K. Mavromatis; V. Markowitz; E. Szeto; N. Ivanova; N. Mikhailova; I. Pagani; A. Pati; L. Peters; G. Ovchinnikova; L. Goodwin

doi:10.4056/sigs.3517166

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

A. Bollmann, C.J. Sedlacek, J. Norton, H.J. Laanbroek, Y. Suwa, L.Y. Stein, M.G. Klotz, D. Arp, L. Sayavedra-Soto, M. Lu, D. Bruce, C. Detter, R. Tapia, J. Han, T. Woyke, S. Lucas, S. Pitluck, L. Pennacchio, M. Nolan, M.L. LandM. Huntemann, S. Deshpande, C. Han, A. Chen, N. Kyrpides, K. Mavromatis, V. Markowitz, E. Szeto, N. Ivanova, N. Mikhailova, I. Pagani, A. Pati, L. Peters, G. Ovchinnikova, L. Goodwin

NIOO - Microbial Ecology (ME)

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

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Abstract

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]

Original language	English
Pages (from-to)	469-482
Journal	Standards in Genomic Sciences
Volume	7
Issue number	3
DOIs	https://doi.org/10.4056/sigs.3517166
Publication status	Published - 2013

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Bollmann, A., Sedlacek, C. J., Norton, J., Laanbroek, H. J., Suwa, Y., Stein, L. Y., Klotz, M. G., Arp, D., Sayavedra-Soto, L., Lu, M., Bruce, D., Detter, C., Tapia, R., Han, J., Woyke, T., Lucas, S., Pitluck, S., Pennacchio, L., Nolan, M., ... Goodwin, L. (2013). Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. Standards in Genomic Sciences, 7(3), 469-482. https://doi.org/10.4056/sigs.3517166

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title = "Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations",

abstract = "Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]",

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author = "A. Bollmann and C.J. Sedlacek and J. Norton and H.J. Laanbroek and Y. Suwa and L.Y. Stein and M.G. Klotz and D. Arp and L. Sayavedra-Soto and M. Lu and D. Bruce and C. Detter and R. Tapia and J. Han and T. Woyke and S. Lucas and S. Pitluck and L. Pennacchio and M. Nolan and M.L. Land and M. Huntemann and S. Deshpande and C. Han and A. Chen and N. Kyrpides and K. Mavromatis and V. Markowitz and E. Szeto and N. Ivanova and N. Mikhailova and I. Pagani and A. Pati and L. Peters and G. Ovchinnikova and L. Goodwin",

note = "Reporting year: 2013 Metis note: z.nr; ME",

year = "2013",

doi = "10.4056/sigs.3517166",

language = "English",

volume = "7",

pages = "469--482",

journal = "Standards in Genomic Sciences",

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Bollmann, A, Sedlacek, CJ, Norton, J, Laanbroek, HJ, Suwa, Y, Stein, LY, Klotz, MG, Arp, D, Sayavedra-Soto, L, Lu, M, Bruce, D, Detter, C, Tapia, R, Han, J, Woyke, T, Lucas, S, Pitluck, S, Pennacchio, L, Nolan, M, Land, ML, Huntemann, M, Deshpande, S, Han, C, Chen, A, Kyrpides, N, Mavromatis, K, Markowitz, V, Szeto, E, Ivanova, N, Mikhailova, N, Pagani, I, Pati, A, Peters, L, Ovchinnikova, G & Goodwin, L 2013, 'Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations', Standards in Genomic Sciences, vol. 7, no. 3, pp. 469-482. https://doi.org/10.4056/sigs.3517166

TY - JOUR

T1 - Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

AU - Bollmann, A.

AU - Sedlacek, C.J.

AU - Norton, J.

AU - Laanbroek, H.J.

AU - Suwa, Y.

AU - Stein, L.Y.

AU - Klotz, M.G.

AU - Arp, D.

AU - Sayavedra-Soto, L.

AU - Lu, M.

AU - Bruce, D.

AU - Detter, C.

AU - Tapia, R.

AU - Han, J.

AU - Woyke, T.

AU - Lucas, S.

AU - Pitluck, S.

AU - Pennacchio, L.

AU - Nolan, M.

AU - Land, M.L.

AU - Huntemann, M.

AU - Deshpande, S.

AU - Han, C.

AU - Chen, A.

AU - Kyrpides, N.

AU - Mavromatis, K.

AU - Markowitz, V.

AU - Szeto, E.

AU - Ivanova, N.

AU - Mikhailova, N.

AU - Pagani, I.

AU - Pati, A.

AU - Peters, L.

AU - Ovchinnikova, G.

AU - Goodwin, L.

N1 - Reporting year: 2013 Metis note: z.nr; ME

PY - 2013

Y1 - 2013

N2 - Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]

AB - Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006. [KEYWORDS: Nitrosomonas Ammonia-oxidizing bacteria Ammonia oxidation nitrification nitrogen cycle freshwater oligotrophic DIFFERENT SENSITIVITIES KDP-ATPASE RNA GENES NOV-SP EUROPAEA NICHE MODEL PROTEOBACTERIA MULTIFORMIS EXPRESSION]

KW - international

U2 - 10.4056/sigs.3517166

DO - 10.4056/sigs.3517166

M3 - Article

SN - 1944-3277

VL - 7

SP - 469

EP - 482

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

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