IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Cobus M. Visagie; Donato Magistà; Massimo Ferrara; Felipe Balocchi; Tuan A. Duong; Ales Eichmeier; David Gramaje; Janneke Aylward; Scott E. Baker; Irene Barnes; Sara Calhoun; Maria De Angelis; Jens C. Frisvad; Eliska Hakalova; Richard D. Hayes; Jos Houbraken; Igor V. Grigoriev; Kurt LaButti; Catarina Leal; Anna Lipzen; Vivian Ng; Jasmyn Pangilinan; Jakub Pecenka; Giancarlo Perrone; Anja Piso; Emily Savage; Milan Spetik; Michael J. Wingfield; Yu Zhang; Brenda D. Wingfield

doi:10.1186/s43008-023-00121-w

IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

Cobus M. Visagie, Donato Magistà, Massimo Ferrara, Felipe Balocchi, Tuan A. Duong, Ales Eichmeier, David Gramaje, Janneke Aylward, Scott E. Baker, Irene Barnes, Sara Calhoun, Maria De Angelis, Jens C. Frisvad, Eliska Hakalova, Richard D. Hayes, Jos Houbraken, Igor V. Grigoriev, Kurt LaButti, Catarina Leal, Anna LipzenVivian Ng, Jasmyn Pangilinan, Jakub Pecenka, Giancarlo Perrone, Anja Piso, Emily Savage, Milan Spetik, Michael J. Wingfield, Yu Zhang, Brenda D. Wingfield^*

^*Corresponding author for this work

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

2 Citations (Scopus)

Original language	English
Article number	21
Journal	IMA Fungus
Volume	14
Issue number	1
DOIs	https://doi.org/10.1186/s43008-023-00121-w
Publication status	Published - Dec 2023

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10.1186/s43008-023-00121-w

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Visagie, C. M., Magistà, D., Ferrara, M., Balocchi, F., Duong, T. A., Eichmeier, A., Gramaje, D., Aylward, J., Baker, S. E., Barnes, I., Calhoun, S., De Angelis, M., Frisvad, J. C., Hakalova, E., Hayes, R. D., Houbraken, J., Grigoriev, I. V., LaButti, K., Leal, C., ... Wingfield, B. D. (2023). IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1. IMA Fungus, 14(1), Article 21. https://doi.org/10.1186/s43008-023-00121-w

Visagie, Cobus M. ; Magistà, Donato ; Ferrara, Massimo et al. / IMA genome-F18 : The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1. In: IMA Fungus. 2023 ; Vol. 14, No. 1.

@article{eb29ce19f0244d36a12dee3365519a82,

title = "IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1",

author = "Visagie, {Cobus M.} and Donato Magist{\`a} and Massimo Ferrara and Felipe Balocchi and Duong, {Tuan A.} and Ales Eichmeier and David Gramaje and Janneke Aylward and Baker, {Scott E.} and Irene Barnes and Sara Calhoun and {De Angelis}, Maria and Frisvad, {Jens C.} and Eliska Hakalova and Hayes, {Richard D.} and Jos Houbraken and Grigoriev, {Igor V.} and Kurt LaButti and Catarina Leal and Anna Lipzen and Vivian Ng and Jasmyn Pangilinan and Jakub Pecenka and Giancarlo Perrone and Anja Piso and Emily Savage and Milan Spetik and Wingfield, {Michael J.} and Yu Zhang and Wingfield, {Brenda D.}",

note = "Funding Information: Trichoderma atroviride SC1 genome sequencing was carried out at the Mendel University in Brno, Czech Republic, and was funded by the Ministerstvo {\v S}kolstv{\'i}, Ml{\'a}de{\v z}e a T{\v e}lov{\'y}chovy (CZ.02.1.01/0.0/0.0/16_025/0007314) and by the Internal Grant of Mendel University in Brno, No. IGA-ZF/2021-SI2005. The work on Penicillium species from dry cured meat (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ) proposal: 10.46936/10.25585/60001195; DOE BER Bioenergy Research Center, are supported by the Office of Science of the US Department of Energy operated under Contract No. DE-AC02-05CH11231. Funding for the project on the T. carnegiei and the Pewenomyces species genomes was provided by Department of Science and Innovation (DSI)-National Research Foundation (NRF) Centre of Excellence in Plant Health Biotechnology (CPHB), South Africa and the DST-NRF SARChI chair in Fungal Genomics. Funding Information: The work on Penicillium species from dry cured meat (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and the DOE Joint BioEnergy Institute ( https://ror.org/03ww55028 ), a DOE BER Bioenergy Research Center, are supported by the Office of Science of the US Department of Energy operated under Contract No. DE-AC02-05CH11231. The work (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and the DOE Joint BioEnergy Institute ( https://ror.org/03ww55028 ), a DOE BER Bioenergy Research Center, are supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. For the T. carnegiei and the Pewenomyces species genomes we acknowledge funding received from the Department of Science and Technology (DST)-National Research Foundation (NRF) Centre of Excellence in Plant Health Biotechnology (CPHB), South Africa and the DST-NRF SARChI chair in Fungal Genomics. ",

year = "2023",

month = dec,

doi = "10.1186/s43008-023-00121-w",

language = "English",

volume = "14",

journal = "IMA Fungus",

issn = "2210-6340",

publisher = "International Mycological Association",

number = "1",

}

Visagie, CM, Magistà, D, Ferrara, M, Balocchi, F, Duong, TA, Eichmeier, A, Gramaje, D, Aylward, J, Baker, SE, Barnes, I, Calhoun, S, De Angelis, M, Frisvad, JC, Hakalova, E, Hayes, RD, Houbraken, J, Grigoriev, IV, LaButti, K, Leal, C, Lipzen, A, Ng, V, Pangilinan, J, Pecenka, J, Perrone, G, Piso, A, Savage, E, Spetik, M, Wingfield, MJ, Zhang, Y & Wingfield, BD 2023, 'IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1', IMA Fungus, vol. 14, no. 1, 21. https://doi.org/10.1186/s43008-023-00121-w

IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1. / Visagie, Cobus M.; Magistà, Donato; Ferrara, Massimo et al.
In: IMA Fungus, Vol. 14, No. 1, 21, 12.2023.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

TY - JOUR

T1 - IMA genome-F18

T2 - The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1

AU - Visagie, Cobus M.

AU - Magistà, Donato

AU - Ferrara, Massimo

AU - Balocchi, Felipe

AU - Duong, Tuan A.

AU - Eichmeier, Ales

AU - Gramaje, David

AU - Aylward, Janneke

AU - Baker, Scott E.

AU - Barnes, Irene

AU - Calhoun, Sara

AU - De Angelis, Maria

AU - Frisvad, Jens C.

AU - Hakalova, Eliska

AU - Hayes, Richard D.

AU - Houbraken, Jos

AU - Grigoriev, Igor V.

AU - LaButti, Kurt

AU - Leal, Catarina

AU - Lipzen, Anna

AU - Ng, Vivian

AU - Pangilinan, Jasmyn

AU - Pecenka, Jakub

AU - Perrone, Giancarlo

AU - Piso, Anja

AU - Savage, Emily

AU - Spetik, Milan

AU - Wingfield, Michael J.

AU - Zhang, Yu

AU - Wingfield, Brenda D.

N1 - Funding Information: Trichoderma atroviride SC1 genome sequencing was carried out at the Mendel University in Brno, Czech Republic, and was funded by the Ministerstvo Školství, Mládeže a Tělovýchovy (CZ.02.1.01/0.0/0.0/16_025/0007314) and by the Internal Grant of Mendel University in Brno, No. IGA-ZF/2021-SI2005. The work on Penicillium species from dry cured meat (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ) proposal: 10.46936/10.25585/60001195; DOE BER Bioenergy Research Center, are supported by the Office of Science of the US Department of Energy operated under Contract No. DE-AC02-05CH11231. Funding for the project on the T. carnegiei and the Pewenomyces species genomes was provided by Department of Science and Innovation (DSI)-National Research Foundation (NRF) Centre of Excellence in Plant Health Biotechnology (CPHB), South Africa and the DST-NRF SARChI chair in Fungal Genomics. Funding Information: The work on Penicillium species from dry cured meat (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and the DOE Joint BioEnergy Institute ( https://ror.org/03ww55028 ), a DOE BER Bioenergy Research Center, are supported by the Office of Science of the US Department of Energy operated under Contract No. DE-AC02-05CH11231. The work (proposal: 10.46936/10.25585/60001195) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, and the DOE Joint BioEnergy Institute ( https://ror.org/03ww55028 ), a DOE BER Bioenergy Research Center, are supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231. For the T. carnegiei and the Pewenomyces species genomes we acknowledge funding received from the Department of Science and Technology (DST)-National Research Foundation (NRF) Centre of Excellence in Plant Health Biotechnology (CPHB), South Africa and the DST-NRF SARChI chair in Fungal Genomics.

PY - 2023/12

Y1 - 2023/12

UR - http://www.scopus.com/inward/record.url?scp=85173698663&partnerID=8YFLogxK

U2 - 10.1186/s43008-023-00121-w

DO - 10.1186/s43008-023-00121-w

M3 - Article

AN - SCOPUS:85173698663

SN - 2210-6340

VL - 14

JO - IMA Fungus

JF - IMA Fungus

IS - 1

M1 - 21

ER -

Visagie CM, Magistà D, Ferrara M, Balocchi F, Duong TA, Eichmeier A et al. IMA genome-F18: The re-identification of Penicillium genomes available in NCBI and draft genomes for Penicillium species from dry cured meat, Penicillium biforme, P. brevicompactum, P. solitum, and P. cvjetkovicii, Pewenomyces kutranfy, Pew. lalenivora, Pew. tapulicola, Pew. kalosus, Teratosphaeria carnegiei, and Trichoderma atroviride SC1. IMA Fungus. 2023 Dec;14(1):21. doi: 10.1186/s43008-023-00121-w

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