Documents

DOI

  • Carlos de Lannoy (Corresponding author)
  • Judith Risse
  • Dick de Ridder
Nanopore sequencing is a novel development in nucleic acid analysis. As such, nanopore-sequencing hardware and software are updated frequently and extensively, which quickly renders peer-reviewed publications on analysis pipeline benchmarking efforts outdated. To provide the user community with a faster, more flexible alternative to peer-reviewed benchmark papers for de novo assembly tool performance we constructed poreTally, a comprehensive benchmarking tool. poreTally automatically assembles a given read set using several often-used assembly pipelines, analyzes the resulting assemblies for correctness and continuity, and finally generates a quality report, which can immediately be published on Github/Gitlab.poreTally is available on Github at https://github.com/ cvdelannoy/poreTally, under an MIT license.Supplementary data are available at Bioinformatics online.
Original languageEnglish
Pages (from-to)2663-2664
Number of pages2
JournalBioinformatics
Volume35
Issue number15
DOI
Publication statusPublished - 2019

    Research areas

  • national

ID: 12790469