The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.: Standards in Genomic Sciences

Robert Czajkowski; Zofia Ozymko; Joanna Siwinska; Adam Ossowicki; Victor de Jager; Magdalena Narajczyk; Ewa Łojkowska

doi:10.1186/s40793-015-0068-z

The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences

Robert Czajkowski
, Zofia Ozymko
, Joanna Siwinska
, Adam Ossowicki
, Victor de Jager
, Magdalena Narajczyk
, Ewa Łojkowska

NIOO - Microbial Ecology (ME)

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

8 Citations (Scopus)

221 Downloads (Pure)

Abstract

Flavobacterium seoulense strain EM1321T is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gliding. Here, we describe the features of Flavobacterium seoulense EM1321T, together with its genome sequence and annotation. The genome comprised 3,792,640 bp, with 3,230 protein-coding genes and 52 RNA genes.

Original language	English
Article number	68
Journal	Standards in Genomic Sciences
Volume	10
DOIs	https://doi.org/10.1186/s40793-015-0068-z
Publication status	Published - 2015

Keywords

international

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10.1186/s40793-015-0068-z

5943_Czajkowski
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Czajkowski, R., Ozymko, Z., Siwinska, J., Ossowicki, A., de Jager, V., Narajczyk, M., & Łojkowska, E. (2015). The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences. Standards in Genomic Sciences, 10, Article 68. https://doi.org/10.1186/s40793-015-0068-z

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abstract = "Flavobacterium seoulense strain EM1321T is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gliding. Here, we describe the features of Flavobacterium seoulense EM1321T, together with its genome sequence and annotation. The genome comprised 3,792,640 bp, with 3,230 protein-coding genes and 52 RNA genes.",

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Czajkowski, R, Ozymko, Z, Siwinska, J, Ossowicki, A, de Jager, V, Narajczyk, M & Łojkowska, E 2015, 'The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences', Standards in Genomic Sciences, vol. 10, 68. https://doi.org/10.1186/s40793-015-0068-z

The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences. / Czajkowski, Robert; Ozymko, Zofia; Siwinska, Joanna et al.
In: Standards in Genomic Sciences, Vol. 10, 68, 2015.

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

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T1 - The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp.

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AU - Czajkowski, Robert

AU - Ozymko, Zofia

AU - Siwinska, Joanna

AU - Ossowicki, Adam

AU - de Jager, Victor

AU - Narajczyk, Magdalena

AU - Łojkowska, Ewa

N1 - 5948, (omgenummerd) ME; Data archiving: data archived in ENA (not NIOO data)

PY - 2015

Y1 - 2015

N2 - Flavobacterium seoulense strain EM1321T is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gliding. Here, we describe the features of Flavobacterium seoulense EM1321T, together with its genome sequence and annotation. The genome comprised 3,792,640 bp, with 3,230 protein-coding genes and 52 RNA genes.

AB - Flavobacterium seoulense strain EM1321T is the type strain of Flavobacterium seoulense sp. nov., a proposed novel species within the genus Flavobacterium. This strain is a Gram-reaction-negative, aerobic, rod-shaped bacterium isolated from stream water in Bukhansan National Park, Seoul. This organism is motile by gliding. Here, we describe the features of Flavobacterium seoulense EM1321T, together with its genome sequence and annotation. The genome comprised 3,792,640 bp, with 3,230 protein-coding genes and 52 RNA genes.

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DO - 10.1186/s40793-015-0068-z

M3 - Article

SN - 1944-3277

VL - 10

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

M1 - 68

ER -

The complete genome, structural proteome, comparative genomics and phylogenetic analysis of a broad host lytic bacteriophage ϕD3 infecting pectinolytic Dickeya spp. Standards in Genomic Sciences

Abstract

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