The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

Linhuan Wu; Kevin McCluskey; Philippe Desmeth; Shuangjiang Liu; Sugawara Hideaki; Ye Yin; Ohkuma Moriya; Takashi Itoh; Cha Young Kim; Jung-Sook Lee; Yuguang Zhou; Hiroko Kawasaki; Manzour Hernando Hazbón; Vincent Robert; Teun Boekhout; Nelson Lima; Lyudmila Evtushenko; Kyria Boundy-Mills; Boyke Bunk; Edward R B Moore; Lily Eurwilaichitr; Supawadee Ingsriswang; Heena Shah; Su Yao; Tao Jin; Jinqun Huang; Wenyu Shi; Qinglan Sun; Guomei Fan; Wei Li; Xian Li; Ipek Kurtböke; Juncai Ma

doi:10.1093/gigascience/giy026

The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

Linhuan Wu, Kevin McCluskey, Philippe Desmeth, Shuangjiang Liu, Sugawara Hideaki, Ye Yin, Ohkuma Moriya, Takashi Itoh, Cha Young Kim, Jung-Sook Lee, Yuguang Zhou, Hiroko Kawasaki, Manzour Hernando Hazbón, Vincent Robert, Teun Boekhout, Nelson Lima, Lyudmila Evtushenko, Kyria Boundy-Mills, Boyke Bunk, Edward R B MooreLily Eurwilaichitr, Supawadee Ingsriswang, Heena Shah, Su Yao, Tao Jin, Jinqun Huang, Wenyu Shi, Qinglan Sun, Guomei Fan, Wei Li, Xian Li, Ipek Kurtböke, Juncai Ma

Research output: Contribution to journal/periodical › Article › Scientific › peer-review

40 Citations (Scopus)

Abstract

Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.

Original language	English
Journal	GigaScience
Volume	7
Issue number	5
DOIs	https://doi.org/10.1093/gigascience/giy026
Publication status	Published - 01 May 2018

Keywords

Bacteria/genetics
Fungi/genetics
Genomics/methods
Prokaryotic Cells/metabolism
Reproducibility of Results
Sequence Analysis, DNA/methods

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10.1093/gigascience/giy026

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Wu, L., McCluskey, K., Desmeth, P., Liu, S., Hideaki, S., Yin, Y., Moriya, O., Itoh, T., Kim, C. Y., Lee, J.-S., Zhou, Y., Kawasaki, H., Hazbón, M. H., Robert, V., Boekhout, T., Lima, N., Evtushenko, L., Boundy-Mills, K., Bunk, B., ... Ma, J. (2018). The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species. GigaScience, 7(5). https://doi.org/10.1093/gigascience/giy026

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title = "The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species",

abstract = "Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.",

keywords = "Bacteria/genetics, Fungi/genetics, Genomics/methods, Prokaryotic Cells/metabolism, Reproducibility of Results, Sequence Analysis, DNA/methods",

author = "Linhuan Wu and Kevin McCluskey and Philippe Desmeth and Shuangjiang Liu and Sugawara Hideaki and Ye Yin and Ohkuma Moriya and Takashi Itoh and Kim, {Cha Young} and Jung-Sook Lee and Yuguang Zhou and Hiroko Kawasaki and Hazb{\'o}n, {Manzour Hernando} and Vincent Robert and Teun Boekhout and Nelson Lima and Lyudmila Evtushenko and Kyria Boundy-Mills and Boyke Bunk and Moore, {Edward R B} and Lily Eurwilaichitr and Supawadee Ingsriswang and Heena Shah and Su Yao and Tao Jin and Jinqun Huang and Wenyu Shi and Qinglan Sun and Guomei Fan and Wei Li and Xian Li and Ipek Kurtb{\"o}ke and Juncai Ma",

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month = may,

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doi = "10.1093/gigascience/giy026",

language = "English",

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Wu, L, McCluskey, K, Desmeth, P, Liu, S, Hideaki, S, Yin, Y, Moriya, O, Itoh, T, Kim, CY, Lee, J-S, Zhou, Y, Kawasaki, H, Hazbón, MH, Robert, V, Boekhout, T, Lima, N, Evtushenko, L, Boundy-Mills, K, Bunk, B, Moore, ERB, Eurwilaichitr, L, Ingsriswang, S, Shah, H, Yao, S, Jin, T, Huang, J, Shi, W, Sun, Q, Fan, G, Li, W, Li, X, Kurtböke, I & Ma, J 2018, 'The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species', GigaScience, vol. 7, no. 5. https://doi.org/10.1093/gigascience/giy026

TY - JOUR

T1 - The global catalogue of microorganisms 10K type strain sequencing project

T2 - closing the genomic gaps for the validly published prokaryotic and fungi species

AU - Wu, Linhuan

AU - McCluskey, Kevin

AU - Desmeth, Philippe

AU - Liu, Shuangjiang

AU - Hideaki, Sugawara

AU - Yin, Ye

AU - Moriya, Ohkuma

AU - Itoh, Takashi

AU - Kim, Cha Young

AU - Lee, Jung-Sook

AU - Zhou, Yuguang

AU - Kawasaki, Hiroko

AU - Hazbón, Manzour Hernando

AU - Robert, Vincent

AU - Boekhout, Teun

AU - Lima, Nelson

AU - Evtushenko, Lyudmila

AU - Boundy-Mills, Kyria

AU - Bunk, Boyke

AU - Moore, Edward R B

AU - Eurwilaichitr, Lily

AU - Ingsriswang, Supawadee

AU - Shah, Heena

AU - Yao, Su

AU - Jin, Tao

AU - Huang, Jinqun

AU - Shi, Wenyu

AU - Sun, Qinglan

AU - Fan, Guomei

AU - Li, Wei

AU - Li, Xian

AU - Kurtböke, Ipek

AU - Ma, Juncai

PY - 2018/5/1

Y1 - 2018/5/1

N2 - Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.

AB - Genomic information is essential for taxonomic, phylogenetic, and functional studies to comprehensively decipher the characteristics of microorganisms, to explore microbiomes through metagenomics, and to answer fundamental questions of nature and human life. However, large gaps remain in the available genomic sequencing information published for bacterial and archaeal species, and the gaps are even larger for fungal type strains. The Global Catalogue of Microorganisms (GCM) leads an internationally coordinated effort to sequence type strains and close gaps in the genomic maps of microorganisms. Hence, the GCM aims to promote research by deep-mining genomic data.

KW - Bacteria/genetics

KW - Fungi/genetics

KW - Genomics/methods

KW - Prokaryotic Cells/metabolism

KW - Reproducibility of Results

KW - Sequence Analysis, DNA/methods

U2 - 10.1093/gigascience/giy026

DO - 10.1093/gigascience/giy026

M3 - Article

C2 - 29718202

SN - 2047-217X

VL - 7

JO - GigaScience

JF - GigaScience

IS - 5

ER -

The global catalogue of microorganisms 10K type strain sequencing project: closing the genomic gaps for the validly published prokaryotic and fungi species

Abstract

Keywords

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