Koen Verhoeven

Zoekresultaten

• AFLP and MS-AFLP data for Spartina alterniflora and Borrichia frutescens collected from three habitats (i.e. low, medium, and high salt) within five sites, respectively, on Sapelo Island, GA in May 2011

  Foust, C. M. (Maker), Preite, V. (Maker), Schrey, A. W. (Maker), Alvarez, M. (Maker), Robertson, M. H. (Maker), Verhoeven, K. (Maker) & Richards, C. L. (Maker), GCE-LTER, 2016

  DOI: 10.6073/pasta/60f8792eb27cd2bd2debaf7e93a6c4f9

  Dataset

• Data from: epiGBS pool blood Parus major

  Sepers, B. (Maker), Shuhua Chen, R. (Maker), Memelink, M. (Maker), Verhoeven, K. (Maker), van Oers, K. (Maker) & Gawehns, F. (Maker), NCBI, 05 apr. 2023

  https://www.ncbi.nlm.nih.gov/sra/?term=SRX18523280+or+SRX18523281+or+SRX18523282+or+SRX18523283+or+SRX18523284+or+SRX18523285+or+SRX18523286+or+SRX18523287

  Dataset

• data from: Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage

  Ibañez, V. N. (Maker), Van Antro, M. (Maker), Peňa, C. (Maker), Milanovic-Ivanovic, S. (Maker), Wagemaker, N. C. A. M. (Maker), Gawehns, F. (Maker) & Verhoeven, K. (Maker), European Nucleotide Archive (ENA), 08 dec. 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB56325

  Dataset

• Taraxacum officinale cultivar:A34 Genome sequencing

  Verhoeven, K. (Maker) & Preite, V. (Maker), NCBI, 07 nov. 2015

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA301484/

  Dataset

• SRX10989860: RRBS individual Parus major

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Milanovic-Ivanovic, S. (Maker), Grosse, I. (Maker), van Oers, K. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10989860[accn]

  Dataset

• Hylemonella gracilis strain NS1 chromosome

  Tyc, O. (Maker), Kulkarni, P. (Maker), Ossowicki, A. (Maker), Tracanna, V. (Maker), Medema, M. H. (Maker), van Baarlen, P. (Maker), van IJcken, W. F. J. (Maker), Verhoeven, K. (Maker) & Garbeva, P. (Maker), NCBI, 2018

  https://www.ncbi.nlm.nih.gov/nuccore/CP031395

  Dataset

• SRX10994460: epiGBS individual blood Parus major

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Milanovic-Ivanovic, S. (Maker), Grosse, I. (Maker), van Oers, K. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), NCBI, 2021

  https://www.ncbi.nlm.nih.gov/sra/SRX10994460[accn]

  Dataset

• SRX10989862: RRBS individual Parus major

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Milanovic-Ivanovic, S. (Maker), Grosse, I. (Maker), van Oers, K. (Maker) & Verhoeven, K. (Maker), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10989862[accn]

  Dataset

• Taraxacum officinale isolate:A68

  Verhoeven, K. (Maker), Van Gurp, T. P. (Bijdrager), Oplaat, C. (Bijdrager) & Ferreira de Carvalho, J. L. (Bijdrager), NCBI, 30 mrt. 2016

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA316842

  Dataset

• Parus major Genome sequencing and assembly

  Laine, V. (Maker), Gossmann, T. I. (Maker), Schachtschneider, K. M. (Maker), Garroway, C. J. (Maker), Madsen, O. (Maker), Verhoeven, K. (Maker), de Jager, V. C. L. (Maker), Megens, H. (Maker), Warren, W. C. (Maker), Minx, P. (Maker), Crooijmans, R. P. M. A. (Maker), Corcoran, P. (Maker), Sheldon, B. C. (Maker), Slate, J. (Maker), Zeng, K. (Maker), van Oers, K. (Maker), Visser, M. E. (Maker) & Groenen, M. A. M. (Maker), NCBI, 2016

  https://www.ncbi.nlm.nih.gov/bioproject/PRJNA208335

  Dataset

• Hylemonella gracilis strain:NS1 | isolate:NS1 Genome sequencing

  Tyc, O. (Maker), Kulkarni, P. (Maker), Ossowicki, A. (Maker), Tracanna, V. (Maker), Medema, M. H. (Maker), van Baarlen, P. (Maker), van IJcken, W. F. J. (Maker), Verhoeven, K. (Maker) & Garbeva, P. (Maker), NCBI, 06 mei 2019

  https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA483535

  Dataset

• SRX10994457: epiGBS individual blood Parus major

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Milanovic-Ivanovic, S. (Maker), Grosse, I. (Maker), van Oers, K. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10994457[accn]

  Dataset

• Data from: Heritable gene expression differences between apomictic clone members in Taraxacum officinale: insights into early stages of evolutionary divergence in asexual plants

  Ferreira de Carvalho, J. L. (Maker), Oplaat, C. (Maker), Pappas, N. (Maker), Derks, M. (Maker), de Ridder, D. (Maker) & Verhoeven, K. J. F. (Maker), Dryad, 16 mrt. 2016

  DOI: 10.5061/dryad.6p2n6

  Dataset

• Data from: Natural epigenetic variation contributes to heritable flowering divergence in a widespread asexual dandelion lineage

  Wilschut, R. A. (Maker), Oplaat, C. (Maker), Snoek, L. B. (Maker), Kirschner, J. (Maker) & Verhoeven, K. J. F. (Maker), Dryad, 26 nov. 2015

  DOI: 10.5061/dryad.hs26b

  Dataset

• Data from: Inter- and intraspecific plant-soil feedbacks of grass species

  Rallo, P. (Maker), Hannula, E. (Maker), ten Hooven, F. (Maker), Verhoeven, K. (Maker), Kammenga, J. E. (Maker) & van der Putten, W. H. (Maker), Zenodo, 26 jan. 2023

  DOI: 10.5281/zenodo.7575226

  Dataset

• Data from: Gene and transposable element methylation in great tit (Parus major) brain and blood

  Derks, M. (Maker), Schachtschneider, K. M. (Maker), Madsen, O. (Maker), Schijlen, E. G. (Maker), Verhoeven, K. (Maker) & van Oers, K. (Maker), NCBI, 20 jan. 2016

  http://www.ncbi.nlm.nih.gov/bioproject/PRJNA208335

  Dataset

• data from: Early developmental carry‐over effects on exploratory behaviour and DNA methylation in wild great tits (<i>Parus major</i>)

  Sepers, B. (Maker), Verhoeven, K. (Maker) & van Oers, K. (Maker), European Nucleotide Archive (ENA), 01 jan. 2024

  https://www.ebi.ac.uk/ena/browser/view/SRX21758800

  Dataset

• Data from: Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage

  Ibañez, V. N. (Maker), Van Antro, M. (Maker), Peňa, C. (Maker), Milanovic-Ivanovic, S. (Maker), Wagemaker, N. C. A. M. (Maker), Gawehns, F. (Maker) & Verhoeven, K. (Maker), Zenodo, 08 dec. 2022

  DOI: 10.5281/zenodo.7566483

  Dataset

• DNA methylation in clonal Duckweed lineages (Lemna minor L.) reflects current and historical environmental exposures

  Van Antro, M. (Maker), Prelovsek, S. (Maker), Milanovic-Ivanovic, S. (Maker), Gawehns, F. (Maker), Wagemaker, N. C. A. M. (Maker), Mysara, M. (Maker), Horemans, N. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), NCBI, 23 sep. 2022

  https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA883550

  Dataset

• Data from: Experimental evidence of rapid heritable adaptation in the absence of initial standing genetic variation

  Lemmen, K. (Maker), Verhoeven, K. (Maker) & Declerck, S. A. J. (Maker), Dryad, 20 okt. 2021

  DOI: 10.5061/dryad.qrfj6q5h5

  Dataset

• data and code from: High-resolution methylome analysis uncovers stress-responsive genomic hotspots and drought-sensitive transposable element superfamilies in the clonal Lombardy poplar

  Peňa, C. (Maker), Diez-Rodriguez, B. (Maker), Perez-Bello, P. (Maker), Becker, C. (Maker), McIntyre, L. M. (Maker), van der Putten, W. H. (Maker), De Paoli, E. (Maker), Heer, K. (Maker), Opgenoorth, L. (Maker) & Verhoeven, K. (Maker), Zenodo, 10 okt. 2024

  DOI: 10.5281/zenodo.8428770

  Dataset

• Data from: Increased transgenerational epigenetic variation, but not predictable epigenetic variants, after environmental exposure in two apomictic dandelion lineages

  Preite, V. (Maker), Oplaat, C. (Maker), Biere, A. (Maker), Kirschner, J. (Maker), van der Putten, W. H. (Maker) & Verhoeven, K. (Maker), Dryad, 19 feb. 2018

  DOI: 10.5061/dryad.tf536

  Dataset

• epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Milanovic-Ivanovic, S. (Maker), Grosse, I. (Maker), van Oers, K. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), Zenodo, 31 dec. 2021

  DOI: 10.5281/zenodo.5519370

  Dataset

• SRX10989863: RRBS individual Parus major

  Gawehns, F. (Maker), Postuma, M. (Maker), Van Antro, M. (Maker), Nunn, A. (Maker), Sepers, B. (Maker), Fatma, S. (Maker), Van Gurp, T. (Maker), Wagemaker, N. C. A. M. (Maker), Mateman, A. C. (Maker), Grosse, I. (Maker), van Oers, K. (Maker), Vergeer, P. (Maker) & Verhoeven, K. (Maker), NCBI, 2022

  https://www.ncbi.nlm.nih.gov/sra/SRX10989863[accn]

  Dataset

• raw_data from: Environmental and genealogical effects on DNA methylation in a widespread apomictic dandelion lineage

  Ibañez, V. N. (Maker), Van Antro, M. (Maker), Peňa, C. (Maker), Milanovic-Ivanovic, S. (Maker), Wagemaker, N. C. A. M. (Maker), Gawehns, F. (Maker) & Verhoeven, K. (Maker), European Nucleotide Archive (ENA), 08 dec. 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB56325

  Dataset