PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases

Onderzoeksoutput: Bijdrage aan wetenschappelijk tijdschrift/periodieke uitgaveArtikelWetenschappelijkpeer review

1 Citaat (Scopus)
32 Downloads (Pure)

Samenvatting

The increase in sequencing capacity has amplified the number of taxonomically unclassified sequences in most databases. The classification of such sequences demands phylogenetic tree construction and comparison to currently classified sequences, a process that demands the processing of large amounts of data and use of several different software. Here, we present PhyloFunDB, a pipeline for extracting, processing, and inferring phylogenetic trees from specific functional genes. The goal of our work is to decrease processing time and facilitate the grouping of sequences that can be used for improved taxonomic classification of functional gene datasets.

Originele taal-2Engels
Artikelnummer1093
TijdschriftMicroorganisms
Volume10
Nummer van het tijdschrift6
DOI's
StatusGepubliceerd - 2022

Vingerafdruk

Duik in de onderzoeksthema's van 'PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases'. Samen vormen ze een unieke vingerafdruk.

Citeer dit